Wall clock time and date at job start Tue Mar 31 2020 01:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47196 * 2 1 4 4 C 1.50701 * 109.46746 * 239.99830 * 2 1 3 5 5 H 1.08004 * 119.99742 * 239.99953 * 4 2 1 6 6 C 1.37871 * 119.99970 * 60.00469 * 4 2 1 7 7 N 1.31511 * 120.00327 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99723 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47411 * 59.99670 * 8 6 4 10 10 H 1.48500 * 109.46979 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46794 * 299.99357 * 8 6 4 12 12 C 1.53005 * 109.46832 * 119.99879 * 2 1 3 13 13 O 1.45197 * 109.46975 * 300.00096 * 12 2 1 14 14 C 1.34733 * 116.99351 * 180.02562 * 13 12 2 15 15 O 1.21488 * 120.00379 * 359.97438 * 14 13 12 16 16 C 1.47598 * 119.99637 * 179.97438 * 14 13 12 17 17 C 1.40988 * 125.98312 * 180.02562 * 16 14 13 18 18 C 1.36151 * 107.95431 * 180.28697 * 17 16 14 19 19 N 1.35814 * 107.32012 * 359.32853 * 18 17 16 20 20 N 1.31888 * 125.97907 * 359.97438 * 16 14 13 21 21 C 1.47768 * 108.14393 * 181.21051 * 19 18 17 22 22 C 1.54649 * 102.19756 * 14.97373 * 21 19 18 23 23 O 1.36119 * 140.87708 * 179.33510 * 18 17 16 24 24 H 1.09003 * 109.47139 * 300.00151 * 1 2 3 25 25 H 1.08999 * 109.47596 * 60.00058 * 1 2 3 26 26 H 1.08997 * 109.47865 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47226 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47330 * 299.99880 * 3 2 1 29 29 H 1.09003 * 109.47200 * 59.99887 * 3 2 1 30 30 H 0.96998 * 119.99792 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46865 * 179.97438 * 12 2 1 32 32 H 1.09001 * 109.47241 * 60.00055 * 12 2 1 33 33 H 1.08001 * 126.02402 * 0.28347 * 17 16 14 34 34 H 1.09004 * 110.78000 * 256.87048 * 21 19 18 35 35 H 1.08994 * 111.02309 * 133.19512 * 21 19 18 36 36 H 1.09002 * 110.85298 * 217.12214 * 22 21 19 37 37 H 1.09001 * 110.84909 * 93.69801 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8279 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0399 -0.7213 1.2493 13 8 1.5559 -0.0367 2.4348 14 6 1.9183 -0.5485 3.6273 15 8 2.6192 -1.5397 3.6753 16 6 1.4639 0.0952 4.8754 17 6 1.7664 -0.3308 6.1848 18 6 1.1565 0.5208 7.0546 19 7 0.5072 1.4571 6.3155 20 7 0.7045 1.1701 4.9608 21 6 -0.1379 2.4094 7.2431 22 6 0.5672 2.0901 8.5820 23 8 0.9938 0.7287 8.3900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.7082 1.1608 -3.4844 31 1 3.1299 -0.7217 1.2491 32 1 1.6766 -1.7489 1.2493 33 1 2.3746 -1.1826 6.4511 34 1 -1.2084 2.2161 7.3132 35 1 0.0521 3.4393 6.9410 36 1 -0.1312 2.1640 9.4156 37 1 1.4233 2.7469 8.7359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810675260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:47 Heat of formation + Delta-G solvation = -37.948149 kcal Electronic energy + Delta-G solvation = -21619.991402 eV Core-core repulsion = 18172.157021 eV Total energy + Delta-G solvation = -3447.834381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.42722 -41.43347 -39.62598 -38.27778 -36.65924 -34.35257 -33.27279 -31.24836 -30.07013 -27.84040 -27.58051 -27.21294 -25.56577 -23.87257 -22.58519 -21.52993 -20.73211 -19.09758 -18.35707 -17.80755 -17.74653 -17.41775 -17.26005 -16.77161 -16.39125 -16.10605 -15.34501 -14.99296 -14.77369 -14.67007 -14.33371 -14.03316 -13.68692 -13.35210 -13.17646 -13.11546 -12.82557 -12.64399 -12.34198 -12.28742 -12.16554 -12.13566 -11.98889 -11.75343 -11.29363 -11.24035 -10.74449 -10.39924 -10.38033 -9.75783 -8.02987 -6.21735 -0.10321 0.68268 0.80187 1.37585 1.47171 1.47493 1.55188 1.89747 2.11427 2.47101 3.00894 3.20394 3.35400 3.76454 3.84995 4.02716 4.20886 4.23817 4.26964 4.40634 4.45616 4.59663 4.61575 4.69940 4.82122 5.04514 5.08163 5.19417 5.22878 5.28569 5.47248 5.62885 5.64712 5.72614 6.05750 6.16131 6.20768 6.36840 6.62343 6.83036 7.46267 8.96870 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.043132 B = 0.003418 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.010251 B = 8189.256392 C = 8629.581515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.062 3.938 3 C -0.118 4.118 4 C -0.535 4.535 5 H 0.054 0.946 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.093 3.907 13 O -0.339 6.339 14 C 0.546 3.454 15 O -0.516 6.516 16 C 0.051 3.949 17 C -0.227 4.227 18 C 0.245 3.755 19 N -0.407 5.407 20 N -0.216 5.216 21 C 0.083 3.917 22 C 0.042 3.958 23 O -0.283 6.283 24 H 0.026 0.974 25 H 0.064 0.936 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.026 0.974 30 H 0.262 0.738 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.175 0.825 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.174 0.826 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.799 5.473 23.395 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 C -0.176 4.176 4 C -0.573 4.573 5 H 0.072 0.928 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.199 1.199 12 C 0.020 3.980 13 O -0.253 6.253 14 C 0.388 3.612 15 O -0.404 6.404 16 C -0.112 4.112 17 C -0.256 4.256 18 C 0.076 3.924 19 N -0.206 5.206 20 N -0.048 5.048 21 C -0.034 4.034 22 C -0.033 4.033 23 O -0.190 6.190 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.193 0.807 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.191 0.809 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.357 6.162 22.749 23.806 hybrid contribution 0.737 -1.058 -0.739 1.486 sum -2.620 5.103 22.010 22.745 Atomic orbital electron populations 1.21620 0.97259 0.98643 1.00080 1.18270 0.93539 0.93255 0.88759 1.21617 0.97856 0.98023 1.00084 1.21179 1.32500 1.12632 0.90944 0.92781 1.25542 0.94917 0.95544 1.01263 1.69946 1.36685 1.23373 1.23922 0.85660 0.78705 0.78715 0.78808 1.19893 1.20781 1.19880 1.23474 0.98160 0.95535 0.80869 1.86655 1.68778 1.55347 1.14542 1.19821 0.76875 0.81069 0.83412 1.90814 1.36114 1.25362 1.88063 1.20598 1.01958 0.96648 0.92006 1.20051 1.11663 1.07114 0.86805 1.20610 0.95258 0.93469 0.83038 1.51369 1.40765 1.25001 1.03485 1.77893 1.19188 1.16017 0.91740 1.24007 1.00222 0.94746 0.84453 1.24976 1.01834 0.78874 0.97595 1.87171 1.84426 1.32600 1.14825 0.95512 0.91707 0.95914 0.95879 0.91720 0.95489 0.92827 0.92291 0.92342 0.80743 0.85381 0.84509 0.80872 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.11 71.98 0.58 -5.39 16 2 C 0.06 3.17 0.58 -52.93 -0.03 3.14 16 3 C -0.12 -5.95 8.11 71.98 0.58 -5.37 16 4 C -0.53 -29.24 8.01 25.60 0.21 -29.03 16 5 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 6 C 0.03 1.48 5.15 84.65 0.44 1.91 16 7 N -0.90 -50.07 9.35 21.44 0.20 -49.87 16 8 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 C 0.09 4.31 4.27 71.98 0.31 4.62 16 13 O -0.34 -14.90 8.88 -56.43 -0.50 -15.40 16 14 C 0.55 22.00 7.97 70.29 0.56 22.56 16 15 O -0.52 -22.01 16.69 19.87 0.33 -21.68 16 16 C 0.05 1.76 7.11 42.28 0.30 2.06 16 17 C -0.23 -6.45 10.60 22.46 0.24 -6.21 16 18 C 0.25 5.69 8.32 83.59 0.70 6.39 16 19 N -0.41 -9.46 5.02 -452.59 -2.27 -11.73 16 20 N -0.22 -7.15 12.74 -48.55 -0.62 -7.77 16 21 C 0.08 0.74 8.13 86.70 0.70 1.44 16 22 C 0.04 0.18 8.07 72.54 0.59 0.77 16 23 O -0.28 -4.50 11.19 -94.90 -1.06 -5.56 16 24 H 0.03 1.25 7.68 -2.39 -0.02 1.24 16 25 H 0.06 3.52 6.07 -2.39 -0.01 3.50 16 26 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.06 3.51 6.07 -2.39 -0.01 3.49 16 29 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 30 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 34 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.17 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -70.73 315.88 4.36 -66.37 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.08 Total: 3.62 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.17 Total: -3.13 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -2.69 Total: -69.37 kcal Atomic # 8 Polarization: -41.41 SS G_CDS: -1.23 Total: -42.64 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -70.73 4.36 -66.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810675260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.426 kcal (2) G-P(sol) polarization free energy of solvation -70.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds