Wall clock time and date at job start Tue Mar 31 2020 01:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.75055 * 2 1 4 4 C 1.53814 * 109.69541 * 120.66834 * 2 1 3 5 5 N 1.46966 * 108.57797 * 169.28556 * 4 2 1 6 6 C 1.34779 * 120.59305 * 124.62256 * 5 4 2 7 7 O 1.21278 * 120.00250 * 180.02562 * 6 5 4 8 8 C 1.50697 * 120.00046 * 0.02747 * 6 5 4 9 9 F 1.39892 * 109.47259 * 179.97438 * 8 6 5 10 10 F 1.39904 * 109.46960 * 299.99964 * 8 6 5 11 11 F 1.39902 * 109.47049 * 59.99260 * 8 6 5 12 12 C 1.46970 * 118.81390 * 304.64678 * 5 4 2 13 13 C 1.53377 * 108.63028 * 55.22620 * 12 5 4 14 14 H 1.09003 * 109.60542 * 190.82588 * 13 12 5 15 15 C 1.53000 * 109.74953 * 70.40675 * 13 12 5 16 16 N 1.46958 * 108.63790 * 310.57448 * 13 12 5 17 17 C 1.36934 * 120.59505 * 235.20855 * 16 13 12 18 18 H 1.07995 * 119.99991 * 215.79632 * 17 16 13 19 19 C 1.38814 * 120.00125 * 35.79588 * 17 16 13 20 20 N 1.31620 * 119.99770 * 29.14499 * 19 17 16 21 21 Si 1.86800 * 120.00006 * 209.14562 * 19 17 16 22 22 H 1.48501 * 109.47065 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47192 * 119.99893 * 21 19 17 24 24 H 1.48500 * 109.47122 * 240.00176 * 21 19 17 25 25 H 1.08999 * 109.47253 * 174.62622 * 1 2 3 26 26 H 1.09000 * 109.47143 * 294.62161 * 1 2 3 27 27 H 1.08999 * 109.47213 * 54.62262 * 1 2 3 28 28 H 1.09001 * 109.74243 * 49.49981 * 4 2 1 29 29 H 1.08989 * 109.67753 * 289.03764 * 4 2 1 30 30 H 1.08996 * 109.60743 * 295.48273 * 12 5 4 31 31 H 1.08998 * 109.74687 * 175.05011 * 12 5 4 32 32 H 1.08997 * 109.47249 * 300.76028 * 15 13 12 33 33 H 1.09000 * 109.47466 * 60.76856 * 15 13 12 34 34 H 1.09003 * 109.47002 * 180.76746 * 15 13 12 35 35 H 0.96998 * 120.00044 * 5.26305 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0258 0.0000 4 6 2.0484 -0.7387 1.2456 5 7 3.4949 -0.9510 1.0959 6 6 4.3534 -0.5146 2.0388 7 8 5.5451 -0.6952 1.9041 8 6 3.8326 0.1976 3.2604 9 9 4.9047 0.5506 4.0869 10 9 3.1447 1.3515 2.8697 11 9 2.9647 -0.6486 3.9590 12 6 3.9885 -1.6472 -0.1006 13 6 3.4696 -0.9134 -1.3435 14 1 3.6610 -1.5167 -2.2310 15 6 4.1756 0.4373 -1.4789 16 7 2.0232 -0.7011 -1.1938 17 6 1.1510 -1.1436 -2.1523 18 1 0.2686 -0.5668 -2.3871 19 6 1.4008 -2.3335 -2.8220 20 7 2.0704 -3.2966 -2.2249 21 14 0.7869 -2.5679 -4.5706 22 1 0.0681 -1.3453 -5.0109 23 1 1.9414 -2.8142 -5.4717 24 1 -0.1361 -3.7301 -4.6195 25 1 -0.3634 -1.0231 -0.0962 26 1 -0.3633 0.4281 0.9342 27 1 -0.3633 0.5950 -0.8379 28 1 1.5451 -1.7010 1.3390 29 1 1.8569 -0.1380 2.1347 30 1 3.6234 -2.6741 -0.1030 31 1 5.0785 -1.6463 -0.1038 32 1 3.9878 1.0363 -0.5879 33 1 5.2480 0.2772 -1.5898 34 1 3.7937 0.9606 -2.3555 35 1 2.3228 -3.2060 -1.2927 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867597045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:43 Heat of formation + Delta-G solvation = -169.638031 kcal Electronic energy + Delta-G solvation = -24202.427106 eV Core-core repulsion = 20207.025483 eV Total energy + Delta-G solvation = -3995.401623 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.57320 -49.03922 -49.00704 -41.53541 -39.35431 -36.07615 -34.56119 -33.50342 -29.99768 -29.33621 -27.95690 -26.97072 -25.17811 -23.08614 -22.23092 -20.93343 -20.21680 -19.94935 -19.38181 -18.49761 -17.49637 -16.72271 -16.68664 -16.13685 -15.94784 -15.84769 -15.69187 -15.61139 -15.39677 -15.38540 -15.10515 -15.03588 -14.70310 -14.47718 -13.88210 -13.53854 -13.22186 -12.92641 -12.75790 -12.67776 -12.45502 -12.11971 -12.03865 -11.86806 -11.84914 -11.53966 -11.21897 -10.44546 -10.15782 -8.77325 -8.16626 -5.38959 0.54764 0.68956 1.64750 1.68497 1.76334 1.85634 2.28817 2.66634 2.77921 2.93126 3.18633 3.35880 3.83601 3.88739 4.03975 4.25463 4.27859 4.38168 4.49713 4.58346 4.62677 4.75146 4.83076 4.91405 5.04081 5.18293 5.21168 5.37945 5.50994 5.80200 6.06363 6.23968 6.50182 7.11443 7.79153 8.28283 9.05647 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.030068 B = 0.006150 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.002173 B = 4551.634981 C = 4870.395956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.151 3.849 3 H 0.044 0.956 4 C 0.081 3.919 5 N -0.562 5.562 6 C 0.473 3.527 7 O -0.521 6.521 8 C 0.465 3.535 9 F -0.155 7.155 10 F -0.159 7.159 11 F -0.160 7.160 12 C 0.108 3.892 13 C 0.157 3.843 14 H 0.067 0.933 15 C -0.144 4.144 16 N -0.598 5.598 17 C -0.348 4.348 18 H 0.051 0.949 19 C -0.057 4.057 20 N -0.931 5.931 21 Si 1.105 2.895 22 H -0.277 1.277 23 H -0.292 1.292 24 H -0.296 1.296 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 7.310 8.912 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.044 3.956 3 H 0.062 0.938 4 C -0.043 4.043 5 N -0.292 5.292 6 C 0.253 3.747 7 O -0.397 6.397 8 C 0.407 3.593 9 F -0.137 7.137 10 F -0.140 7.140 11 F -0.142 7.142 12 C -0.015 4.015 13 C 0.050 3.950 14 H 0.085 0.915 15 C -0.203 4.203 16 N -0.322 5.322 17 C -0.477 4.477 18 H 0.069 0.931 19 C -0.257 4.257 20 N -0.572 5.572 21 Si 0.931 3.069 22 H -0.202 1.202 23 H -0.219 1.219 24 H -0.223 1.223 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.814 6.197 7.540 9.794 hybrid contribution -0.059 0.818 1.453 1.668 sum 0.755 7.015 8.993 11.430 Atomic orbital electron populations 1.21620 0.93201 1.01696 1.01507 1.21206 0.95099 0.94162 0.85097 0.93803 1.22965 0.77830 1.02388 1.01118 1.48070 1.08194 1.53373 1.19589 1.20540 0.87327 0.82118 0.84684 1.90802 1.15179 1.56980 1.76784 1.19827 0.76266 0.78362 0.84837 1.93244 1.55428 1.91972 1.73015 1.93264 1.79541 1.50563 1.90645 1.93267 1.69862 1.70444 1.80597 1.22319 0.99898 0.95583 0.83709 1.20822 0.84270 0.94898 0.95014 0.91481 1.22029 0.99493 0.97870 1.00918 1.44399 1.00584 1.67138 1.20071 1.19905 1.07825 1.04083 1.15920 0.93108 1.26864 1.00135 0.90830 1.07836 1.70884 1.41747 1.31225 1.13300 0.82991 0.75596 0.75377 0.72889 1.20232 1.21931 1.22319 0.93577 0.90286 0.93024 0.90738 0.88095 0.91532 0.89070 0.93785 0.92230 0.92965 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.12 71.98 0.58 -3.40 16 2 C 0.15 5.38 3.25 45.18 0.15 5.53 16 3 H 0.04 1.55 7.38 -2.39 -0.02 1.53 16 4 C 0.08 2.57 5.32 86.56 0.46 3.03 16 5 N -0.56 -19.28 2.61 -817.15 -2.13 -21.41 16 6 C 0.47 15.56 7.27 87.66 0.64 16.20 16 7 O -0.52 -19.65 16.02 -3.02 -0.05 -19.70 16 8 C 0.47 12.65 2.79 71.23 0.20 12.85 16 9 F -0.16 -4.27 16.92 44.97 0.76 -3.51 16 10 F -0.16 -4.02 15.69 44.97 0.71 -3.31 16 11 F -0.16 -4.04 15.91 44.97 0.72 -3.32 16 12 C 0.11 4.17 5.80 86.42 0.50 4.67 16 13 C 0.16 6.57 2.33 45.03 0.10 6.67 16 14 H 0.07 3.24 6.48 -2.39 -0.02 3.23 16 15 C -0.14 -5.22 9.14 71.98 0.66 -4.56 16 16 N -0.60 -26.04 2.40 -649.89 -1.56 -27.60 16 17 C -0.35 -17.12 8.06 84.03 0.68 -16.45 16 18 H 0.05 2.55 6.75 -2.91 -0.02 2.53 16 19 C -0.06 -2.94 4.53 84.86 0.38 -2.55 16 20 N -0.93 -51.10 12.63 21.65 0.27 -50.82 16 21 Si 1.10 47.70 30.01 68.60 2.06 49.76 16 22 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.30 -12.80 7.11 99.48 0.71 -12.09 16 25 H 0.05 1.70 7.67 -2.39 -0.02 1.68 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.05 1.75 7.36 -2.39 -0.02 1.73 16 28 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 29 H 0.10 2.65 4.63 -2.39 -0.01 2.64 16 30 H 0.07 2.84 6.33 -2.39 -0.02 2.82 16 31 H 0.09 3.42 6.98 -2.39 -0.02 3.41 16 32 H 0.04 1.54 7.02 -2.39 -0.02 1.52 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.26 14.27 5.69 -92.71 -0.53 13.75 16 Total: -1.00 -55.85 288.95 6.49 -49.36 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.37 Total: 8.57 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 4.35 Total: 21.99 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -3.42 Total: -99.83 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.05 Total: -19.70 kcal Atomic # 9 Polarization: -12.33 SS G_CDS: 2.18 Total: -10.14 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.06 Total: 49.76 kcal Total: -55.85 6.49 -49.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867597045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.278 kcal (2) G-P(sol) polarization free energy of solvation -55.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds