Wall clock time and date at job start Tue Mar 31 2020 01:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47301 * 2 1 4 4 C 1.50698 * 109.47319 * 239.99615 * 2 1 3 5 5 H 1.08004 * 120.00127 * 245.38282 * 4 2 1 6 6 C 1.37879 * 119.99592 * 65.37748 * 4 2 1 7 7 N 1.31515 * 119.99616 * 184.88880 * 6 4 2 8 8 Si 1.86791 * 120.00348 * 5.16595 * 6 4 2 9 9 H 1.48500 * 109.47313 * 269.72497 * 8 6 4 10 10 H 1.48507 * 109.46966 * 29.72411 * 8 6 4 11 11 H 1.48502 * 109.47222 * 149.72043 * 8 6 4 12 12 C 1.50707 * 109.47104 * 119.99673 * 2 1 3 13 13 O 1.20822 * 119.99609 * 119.99984 * 12 2 1 14 14 O 1.34227 * 119.99743 * 300.00114 * 12 2 1 15 15 C 1.45204 * 116.99488 * 179.97438 * 14 12 2 16 16 C 1.50705 * 109.46672 * 179.97438 * 15 14 12 17 17 N 1.31129 * 126.54964 * 89.71678 * 16 15 14 18 18 C 1.34498 * 105.61545 * 179.91421 * 17 16 15 19 19 C 1.50695 * 126.29226 * 180.12201 * 18 17 16 20 20 C 1.53776 * 113.62074 * 219.37486 * 19 18 17 21 21 C 1.53954 * 87.02391 * 220.05017 * 20 19 18 22 22 C 1.53774 * 87.10913 * 25.35943 * 21 20 19 23 23 N 1.29951 * 107.42122 * 0.34648 * 18 17 16 24 24 O 1.21300 * 110.25166 * 359.77938 * 23 18 17 25 25 H 1.09000 * 109.47363 * 294.98770 * 1 2 3 26 26 H 1.09003 * 109.47063 * 54.98852 * 1 2 3 27 27 H 1.08997 * 109.47139 * 174.98602 * 1 2 3 28 28 H 0.97000 * 120.00189 * 355.27243 * 7 6 4 29 29 H 1.09001 * 109.47255 * 299.99203 * 15 14 12 30 30 H 1.08994 * 109.47520 * 59.99964 * 15 14 12 31 31 H 1.09002 * 112.84841 * 350.57687 * 19 18 17 32 32 H 1.09004 * 113.61124 * 334.57444 * 20 19 18 33 33 H 1.09004 * 113.61679 * 105.46423 * 20 19 18 34 34 H 1.08998 * 113.53155 * 270.81056 * 21 20 19 35 35 H 1.08999 * 113.74224 * 139.94000 * 21 20 19 36 36 H 1.08997 * 113.62039 * 220.09054 * 22 21 20 37 37 H 1.09001 * 113.61323 * 89.19044 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5797 -1.6365 -1.1336 6 6 1.7931 -0.1783 -2.4796 7 7 2.1463 -0.8449 -3.5569 8 14 0.9744 1.4927 -2.6419 9 1 -0.4985 1.3174 -2.7141 10 1 1.3162 2.3280 -1.4626 11 1 1.4545 2.1613 -3.8779 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6927 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2268 -0.9862 3.5897 16 6 1.7628 -0.3288 4.8640 17 7 0.6593 -0.5921 5.5216 18 6 0.6673 0.2300 6.5860 19 6 -0.3895 0.3127 7.6572 20 6 -0.6864 1.7486 8.1203 21 6 -0.7735 1.1840 9.5499 22 6 0.1471 0.0480 9.0738 23 7 1.7514 0.9434 6.5186 24 8 2.3947 0.6378 5.5366 25 1 -0.3634 0.4341 0.9315 26 1 -0.3633 0.5896 -0.8417 27 1 -0.3633 -1.0237 -0.0898 28 1 2.6361 -1.6779 -3.4730 29 1 1.8624 -2.0130 3.5567 30 1 3.3162 -0.9860 3.5570 31 1 -1.2837 -0.2616 7.4147 32 1 0.1465 2.4361 7.9723 33 1 -1.6320 2.1414 7.7464 34 1 -1.7736 0.8491 9.8253 35 1 -0.3197 1.8268 10.3041 36 1 -0.1265 -0.9304 9.4686 37 1 1.2083 0.2696 9.1871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869550484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:01 Heat of formation + Delta-G solvation = -0.838444 kcal Electronic energy + Delta-G solvation = -21220.673262 eV Core-core repulsion = 17774.448079 eV Total energy + Delta-G solvation = -3446.225183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.78017 -39.98121 -39.23820 -36.38941 -35.67680 -34.08053 -32.95960 -31.32537 -28.30041 -27.21712 -26.07193 -24.96200 -23.88152 -23.18511 -22.00044 -19.95703 -19.59445 -18.25654 -17.99390 -17.58357 -16.77538 -16.25873 -16.06710 -15.93933 -15.50014 -14.37941 -13.84269 -13.61250 -13.28857 -13.19548 -12.88593 -12.81983 -12.62561 -12.45238 -11.97579 -11.78569 -11.61441 -11.35465 -11.32764 -11.25676 -10.90740 -10.86557 -10.66159 -10.52381 -10.38420 -10.12514 -9.85606 -9.43848 -8.78490 -8.55933 -6.56277 -4.21616 0.80142 1.90075 2.44430 2.93662 3.20921 3.30687 3.35980 3.50002 3.52275 3.77171 4.19373 4.22912 4.38711 4.40295 4.44177 4.78305 4.98944 5.11391 5.19565 5.22249 5.32671 5.33997 5.46245 5.50016 5.53064 5.63602 5.66541 5.78094 6.01657 6.12169 6.29265 6.35960 6.64035 6.83926 7.07229 7.65088 7.95252 8.32866 8.49236 8.84340 9.49924 10.86445 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.003283 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.706340 B = 8526.360768 C = 8966.888165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.028 3.972 3 H 0.067 0.933 4 C -0.594 4.594 5 H 0.078 0.922 6 C 0.032 3.968 7 N -0.904 5.904 8 Si 1.051 2.949 9 H -0.280 1.280 10 H -0.277 1.277 11 H -0.286 1.286 12 C 0.479 3.521 13 O -0.499 6.499 14 O -0.362 6.362 15 C 0.156 3.844 16 C 0.190 3.810 17 N -0.460 5.460 18 C 0.180 3.820 19 C -0.027 4.027 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.127 4.127 23 N -0.377 5.377 24 O 0.088 5.912 25 H 0.042 0.958 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.271 0.729 29 H 0.115 0.885 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 4.128 23.576 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.084 0.916 4 C -0.632 4.632 5 H 0.096 0.904 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.880 3.120 9 H -0.207 1.207 10 H -0.203 1.203 11 H -0.213 1.213 12 C 0.323 3.677 13 O -0.383 6.383 14 O -0.279 6.279 15 C 0.080 3.920 16 C -0.031 4.031 17 N -0.195 5.195 18 C -0.093 4.093 19 C -0.047 4.047 20 C -0.167 4.167 21 C -0.175 4.175 22 C -0.165 4.165 23 N -0.083 5.083 24 O 0.028 5.972 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.492 5.281 23.082 24.307 hybrid contribution 0.801 -1.363 0.940 1.839 sum -4.691 3.918 24.021 24.787 Atomic orbital electron populations 1.22082 0.96126 1.02016 1.00114 1.19310 0.94305 0.97801 0.87728 0.91571 1.22051 1.40608 1.11206 0.89358 0.90404 1.25771 0.96423 1.03517 0.91589 1.70794 1.36022 1.16931 1.30012 0.83908 0.76518 0.75500 0.76034 1.20699 1.20322 1.21277 1.24926 0.76850 0.83330 0.82641 1.90560 1.35575 1.26068 1.86117 1.86674 1.70718 1.55665 1.14886 1.20868 1.00229 0.94254 0.76693 1.28219 0.88217 0.89395 0.97281 1.71930 1.17684 1.24455 1.05477 1.25700 0.95716 0.91603 0.96272 1.21095 0.94447 1.00082 0.89058 1.23036 1.02944 0.94689 0.96063 1.22822 1.00240 0.97810 0.96668 1.22984 1.00425 0.99835 0.93300 1.74552 1.07913 1.21413 1.04436 1.85324 1.42624 1.42436 1.26822 0.93916 0.92493 0.92417 0.91880 0.86683 0.87533 0.86039 0.89228 0.90454 0.89553 0.90703 0.90474 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.75 37.16 0.32 -2.68 16 2 C 0.03 0.66 2.32 -92.92 -0.22 0.44 16 3 H 0.07 1.48 6.64 -51.93 -0.34 1.14 16 4 C -0.59 -16.49 8.72 -34.44 -0.30 -16.79 16 5 H 0.08 2.41 7.00 -52.48 -0.37 2.04 16 6 C 0.03 0.90 5.43 -17.82 -0.10 0.81 16 7 N -0.90 -27.30 13.70 55.43 0.76 -26.55 16 8 Si 1.05 24.14 25.28 -169.99 -4.30 19.85 16 9 H -0.28 -6.06 6.82 56.52 0.39 -5.67 16 10 H -0.28 -5.79 6.35 56.52 0.36 -5.44 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.48 10.30 7.25 36.01 0.26 10.56 16 13 O -0.50 -11.81 15.22 -18.75 -0.29 -12.10 16 14 O -0.36 -6.48 10.01 -39.25 -0.39 -6.87 16 15 C 0.16 2.19 6.09 36.01 0.22 2.41 16 16 C 0.19 2.66 8.15 -13.06 -0.11 2.56 16 17 N -0.46 -6.69 11.55 -9.86 -0.11 -6.80 16 18 C 0.18 2.33 7.26 -156.37 -1.14 1.20 16 19 C -0.03 -0.25 4.28 -90.96 -0.39 -0.64 16 20 C -0.13 -1.04 7.63 -25.83 -0.20 -1.24 16 21 C -0.14 -0.86 8.09 -25.83 -0.21 -1.07 16 22 C -0.13 -0.97 7.63 -25.92 -0.20 -1.17 16 23 N -0.38 -5.18 11.80 30.90 0.36 -4.81 16 24 O 0.09 1.23 11.31 18.10 0.20 1.43 16 25 H 0.04 0.76 7.99 -51.93 -0.42 0.34 16 26 H 0.06 1.16 4.41 -51.93 -0.23 0.93 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.27 8.22 8.72 -40.82 -0.36 7.86 16 29 H 0.12 1.52 8.13 -51.93 -0.42 1.10 16 30 H 0.11 1.29 8.13 -51.93 -0.42 0.87 16 31 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.09 0.83 7.81 -51.93 -0.41 0.42 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 LS Contribution 316.54 15.07 4.77 4.77 Total: -1.00 -31.59 316.54 -5.81 -37.40 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.77 Total: -0.71 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.04 Total: -5.62 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 1.01 Total: -38.16 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.47 Total: -17.54 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -4.30 Total: 19.85 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.59 -5.81 -37.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869550484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.559 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds