Wall clock time and date at job start Tue Mar 31 2020 01:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47301 * 2 1 4 4 C 1.50698 * 109.47319 * 239.99615 * 2 1 3 5 5 H 1.08004 * 120.00127 * 245.38282 * 4 2 1 6 6 C 1.37879 * 119.99592 * 65.37748 * 4 2 1 7 7 N 1.31515 * 119.99616 * 184.88880 * 6 4 2 8 8 Si 1.86791 * 120.00348 * 5.16595 * 6 4 2 9 9 H 1.48500 * 109.47313 * 269.72497 * 8 6 4 10 10 H 1.48507 * 109.46966 * 29.72411 * 8 6 4 11 11 H 1.48502 * 109.47222 * 149.72043 * 8 6 4 12 12 C 1.50707 * 109.47104 * 119.99673 * 2 1 3 13 13 O 1.20822 * 119.99609 * 119.99984 * 12 2 1 14 14 O 1.34227 * 119.99743 * 300.00114 * 12 2 1 15 15 C 1.45204 * 116.99488 * 179.97438 * 14 12 2 16 16 C 1.50705 * 109.46672 * 179.97438 * 15 14 12 17 17 N 1.31129 * 126.54964 * 89.71678 * 16 15 14 18 18 C 1.34498 * 105.61545 * 179.91421 * 17 16 15 19 19 C 1.50695 * 126.29226 * 180.12201 * 18 17 16 20 20 C 1.53776 * 113.62074 * 219.37486 * 19 18 17 21 21 C 1.53954 * 87.02391 * 220.05017 * 20 19 18 22 22 C 1.53774 * 87.10913 * 25.35943 * 21 20 19 23 23 N 1.29951 * 107.42122 * 0.34648 * 18 17 16 24 24 O 1.21300 * 110.25166 * 359.77938 * 23 18 17 25 25 H 1.09000 * 109.47363 * 294.98770 * 1 2 3 26 26 H 1.09003 * 109.47063 * 54.98852 * 1 2 3 27 27 H 1.08997 * 109.47139 * 174.98602 * 1 2 3 28 28 H 0.97000 * 120.00189 * 355.27243 * 7 6 4 29 29 H 1.09001 * 109.47255 * 299.99203 * 15 14 12 30 30 H 1.08994 * 109.47520 * 59.99964 * 15 14 12 31 31 H 1.09002 * 112.84841 * 350.57687 * 19 18 17 32 32 H 1.09004 * 113.61124 * 334.57444 * 20 19 18 33 33 H 1.09004 * 113.61679 * 105.46423 * 20 19 18 34 34 H 1.08998 * 113.53155 * 270.81056 * 21 20 19 35 35 H 1.08999 * 113.74224 * 139.94000 * 21 20 19 36 36 H 1.08997 * 113.62039 * 220.09054 * 22 21 20 37 37 H 1.09001 * 113.61323 * 89.19044 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5797 -1.6365 -1.1336 6 6 1.7931 -0.1783 -2.4796 7 7 2.1463 -0.8449 -3.5569 8 14 0.9744 1.4927 -2.6419 9 1 -0.4985 1.3174 -2.7141 10 1 1.3162 2.3280 -1.4626 11 1 1.4545 2.1613 -3.8779 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6927 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2268 -0.9862 3.5897 16 6 1.7628 -0.3288 4.8640 17 7 0.6593 -0.5921 5.5216 18 6 0.6673 0.2300 6.5860 19 6 -0.3895 0.3127 7.6572 20 6 -0.6864 1.7486 8.1203 21 6 -0.7735 1.1840 9.5499 22 6 0.1471 0.0480 9.0738 23 7 1.7514 0.9434 6.5186 24 8 2.3947 0.6378 5.5366 25 1 -0.3634 0.4341 0.9315 26 1 -0.3633 0.5896 -0.8417 27 1 -0.3633 -1.0237 -0.0898 28 1 2.6361 -1.6779 -3.4730 29 1 1.8624 -2.0130 3.5567 30 1 3.3162 -0.9860 3.5570 31 1 -1.2837 -0.2616 7.4147 32 1 0.1465 2.4361 7.9723 33 1 -1.6320 2.1414 7.7464 34 1 -1.7736 0.8491 9.8253 35 1 -0.3197 1.8268 10.3041 36 1 -0.1265 -0.9304 9.4686 37 1 1.2083 0.2696 9.1871 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869550484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:01 Heat of formation + Delta-G solvation = -21.994754 kcal Electronic energy + Delta-G solvation = -21221.590669 eV Core-core repulsion = 17774.448079 eV Total energy + Delta-G solvation = -3447.142590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.84002 -41.60804 -39.88966 -37.93024 -36.77599 -36.02162 -34.10666 -33.28943 -29.51377 -27.98440 -26.86839 -26.66773 -25.28077 -24.56357 -22.96371 -21.67800 -20.29421 -19.62389 -19.39659 -19.01113 -18.43745 -17.64965 -17.52778 -16.72808 -16.34785 -15.81273 -15.41304 -15.13661 -14.52313 -14.25085 -14.06658 -14.00132 -13.86095 -13.50773 -13.45412 -13.41949 -13.05985 -12.65749 -12.43232 -12.37028 -12.13145 -12.01289 -11.91438 -11.64547 -11.57429 -11.44246 -11.24801 -10.98005 -10.86961 -10.65649 -8.80913 -6.46779 -0.31724 0.83952 1.23269 1.30313 1.49322 1.58978 1.73856 1.96414 2.42543 2.50174 2.81307 3.07218 3.53107 3.57212 3.62637 3.80572 3.84989 3.90104 4.03163 4.17231 4.37998 4.49181 4.57072 4.63890 4.66680 4.71221 4.76004 4.83430 4.95118 4.97938 5.04558 5.08323 5.17259 5.39604 5.44628 5.68538 6.02330 6.51975 6.81017 6.89465 7.35195 8.61376 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.034192 B = 0.003283 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.706340 B = 8526.360768 C = 8966.888165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.018 3.982 3 H 0.084 0.916 4 C -0.599 4.599 5 H 0.029 0.971 6 C -0.019 4.019 7 N -0.938 5.938 8 Si 1.089 2.911 9 H -0.255 1.255 10 H -0.239 1.239 11 H -0.292 1.292 12 C 0.488 3.512 13 O -0.530 6.530 14 O -0.355 6.355 15 C 0.155 3.845 16 C 0.189 3.811 17 N -0.475 5.475 18 C 0.181 3.819 19 C -0.038 4.038 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.125 4.125 23 N -0.387 5.387 24 O 0.083 5.917 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.252 0.748 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 5.932 25.925 27.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.001 4.001 3 H 0.102 0.898 4 C -0.636 4.636 5 H 0.047 0.953 6 C -0.216 4.216 7 N -0.574 5.574 8 Si 0.909 3.091 9 H -0.180 1.180 10 H -0.163 1.163 11 H -0.219 1.219 12 C 0.333 3.667 13 O -0.418 6.418 14 O -0.272 6.272 15 C 0.079 3.921 16 C -0.032 4.032 17 N -0.211 5.211 18 C -0.092 4.092 19 C -0.058 4.058 20 C -0.168 4.168 21 C -0.161 4.161 22 C -0.163 4.163 23 N -0.095 5.095 24 O 0.025 5.975 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.321 7.081 25.479 27.439 hybrid contribution 1.419 -2.003 0.342 2.478 sum -5.902 5.078 25.821 26.969 Atomic orbital electron populations 1.21984 0.93610 1.01980 1.02159 1.19253 0.96216 0.97959 0.86718 0.89806 1.22115 1.39744 1.09763 0.92023 0.95275 1.27375 0.96418 1.06738 0.91105 1.70940 1.38103 1.16944 1.31378 0.83525 0.77089 0.71208 0.77290 1.17965 1.16257 1.21913 1.24445 0.76185 0.82575 0.83531 1.90559 1.36971 1.27399 1.86831 1.86566 1.70371 1.55634 1.14649 1.21128 1.01503 0.94219 0.75210 1.28095 0.88318 0.89544 0.97194 1.71954 1.17914 1.25077 1.06177 1.26367 0.95964 0.90525 0.96309 1.21475 0.94041 1.01448 0.88836 1.23039 1.02772 0.93571 0.97451 1.22809 1.00893 0.96796 0.95611 1.22980 1.00040 1.01201 0.92112 1.74559 1.08421 1.21925 1.04561 1.85316 1.42802 1.42419 1.26996 0.90555 0.91912 0.93385 0.93928 0.85699 0.85504 0.84986 0.90731 0.89513 0.87669 0.89923 0.89206 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 8.75 71.98 0.63 -4.74 16 2 C 0.02 0.81 2.32 -12.28 -0.03 0.79 16 3 H 0.08 3.50 6.64 -2.39 -0.02 3.48 16 4 C -0.60 -33.79 8.72 25.60 0.22 -33.57 16 5 H 0.03 1.89 7.00 -2.91 -0.02 1.87 16 6 C -0.02 -1.08 5.43 84.66 0.46 -0.62 16 7 N -0.94 -58.45 13.70 21.45 0.29 -58.16 16 8 Si 1.09 46.71 25.28 68.60 1.73 48.44 16 9 H -0.25 -9.87 6.82 99.48 0.68 -9.19 16 10 H -0.24 -8.73 6.35 99.48 0.63 -8.09 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 C 0.49 20.51 7.25 71.24 0.52 21.02 16 13 O -0.53 -25.35 15.22 21.98 0.33 -25.01 16 14 O -0.36 -12.02 10.01 -51.39 -0.51 -12.54 16 15 C 0.15 4.11 6.09 71.24 0.43 4.55 16 16 C 0.19 5.03 8.15 88.38 0.72 5.75 16 17 N -0.48 -13.06 11.55 -303.18 -3.50 -16.56 16 18 C 0.18 4.43 7.26 138.46 1.01 5.43 16 19 C -0.04 -0.64 4.28 -11.02 -0.05 -0.69 16 20 C -0.13 -1.82 7.63 31.18 0.24 -1.58 16 21 C -0.12 -1.19 8.09 31.18 0.25 -0.93 16 22 C -0.12 -1.63 7.63 31.12 0.24 -1.39 16 23 N -0.39 -10.18 11.80 -60.30 -0.71 -10.90 16 24 O 0.08 2.21 11.31 74.85 0.85 3.05 16 25 H 0.08 2.41 7.99 -2.39 -0.02 2.39 16 26 H 0.06 2.33 4.41 -2.39 -0.01 2.32 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.25 16.14 8.72 -92.71 -0.81 15.33 16 29 H 0.13 3.13 8.13 -2.39 -0.02 3.11 16 30 H 0.13 2.88 8.13 -2.39 -0.02 2.87 16 31 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 1.28 7.81 -2.38 -0.02 1.26 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 Total: -1.00 -70.31 316.54 4.07 -66.23 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.95 Total: 11.42 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.64 Total: -5.99 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -3.92 Total: -85.62 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: 0.67 Total: -34.49 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.73 Total: 48.44 kcal Total: -70.31 4.07 -66.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869550484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.240 kcal (2) G-P(sol) polarization free energy of solvation -70.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds