Wall clock time and date at job start Tue Mar 31 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00242 * 2 1 4 4 C 1.53001 * 109.47358 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46797 * 304.99565 * 4 3 2 6 6 O 1.42896 * 109.47322 * 64.99593 * 4 3 2 7 7 C 1.50702 * 109.46993 * 184.99755 * 4 3 2 8 8 O 1.21275 * 119.99900 * 24.99600 * 7 4 3 9 9 N 1.34777 * 119.99948 * 204.99677 * 7 4 3 10 10 C 1.39267 * 119.99998 * 174.84594 * 9 7 4 11 11 C 1.39670 * 119.57123 * 185.36134 * 10 9 7 12 12 C 1.38664 * 119.49294 * 179.74301 * 11 10 9 13 13 C 1.38342 * 118.66736 * 0.52460 * 12 11 10 14 14 C 1.40581 * 119.13177 * 359.74099 * 13 12 11 15 15 C 1.41337 * 119.79171 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99790 * 359.97438 * 15 14 13 17 17 C 1.40024 * 120.00370 * 179.97438 * 15 14 13 18 18 N 1.30744 * 120.00048 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00237 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47461 * 89.99369 * 19 17 15 21 21 H 1.48499 * 109.47119 * 209.99574 * 19 17 15 22 22 H 1.48500 * 109.46956 * 329.99533 * 19 17 15 23 23 N 1.31900 * 119.57494 * 5.63463 * 10 9 7 24 24 H 1.09004 * 109.47173 * 60.00395 * 1 2 3 25 25 H 1.09004 * 109.47470 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47279 * 300.00176 * 1 2 3 27 27 H 1.09009 * 109.46697 * 299.99800 * 3 2 1 28 28 H 1.08994 * 109.47267 * 59.99487 * 3 2 1 29 29 H 1.09002 * 109.47235 * 60.00179 * 5 4 3 30 30 H 1.08998 * 109.47382 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.47486 * 300.00054 * 5 4 3 32 32 H 0.96698 * 113.99913 * 60.00044 * 6 4 3 33 33 H 0.97001 * 119.99392 * 354.84650 * 9 7 4 34 34 H 1.07994 * 120.25545 * 0.02562 * 11 10 9 35 35 H 1.07993 * 120.66378 * 180.26966 * 12 11 10 36 36 H 1.08004 * 120.43524 * 179.76766 * 13 12 11 37 37 H 0.96999 * 120.00111 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9789 0.3194 1.1807 6 8 3.9649 0.5795 -1.2219 7 6 4.1480 2.5559 0.1231 8 8 3.5219 3.4550 0.6431 9 7 5.3916 2.7831 -0.3441 10 6 5.9168 4.0729 -0.3276 11 6 7.1597 4.3185 -0.9155 12 6 7.6787 5.6043 -0.9029 13 6 6.9481 6.6090 -0.2940 14 6 5.7057 6.2968 0.2852 15 6 4.9474 7.3125 0.9105 16 1 5.3230 8.3246 0.9426 17 6 3.7092 7.0067 1.4883 18 7 3.2542 5.7816 1.4491 19 14 2.7066 8.3492 2.3141 20 1 1.8055 8.9790 1.3159 21 1 1.8963 7.7590 3.4096 22 1 3.6212 9.3769 2.8732 23 7 5.2366 5.0455 0.2477 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 1.6886 1.8464 0.8899 29 1 3.5358 -0.6725 1.0912 30 1 5.0655 0.2337 1.1806 31 1 3.6514 0.7809 2.1122 32 1 3.7176 1.0751 -2.0145 33 1 5.9208 2.0483 -0.6918 34 1 7.7103 3.5141 -1.3803 35 1 8.6359 5.8164 -1.3556 36 1 7.3269 7.6199 -0.2643 37 1 2.3962 5.5698 1.8490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922154310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:00 Heat of formation + Delta-G solvation = -70.252473 kcal Electronic energy + Delta-G solvation = -22467.461549 eV Core-core repulsion = 19018.226347 eV Total energy + Delta-G solvation = -3449.235201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.94400 -38.31642 -37.30041 -36.08888 -34.19826 -33.02937 -31.46578 -30.33591 -29.06093 -27.40935 -25.78498 -25.57693 -23.36479 -21.54659 -20.87280 -19.36088 -18.16709 -17.35682 -16.41721 -16.07703 -15.95540 -15.45673 -14.73904 -14.54718 -14.46298 -14.21081 -13.61810 -13.49484 -13.44926 -12.86264 -12.35257 -12.23515 -12.02056 -11.95817 -11.77737 -11.64242 -11.25268 -11.18733 -10.98474 -10.68067 -10.51278 -10.34349 -9.96473 -9.72790 -9.68571 -9.05951 -8.85391 -8.00529 -7.25690 -7.01019 -6.18908 -4.43699 2.68891 3.00786 3.13946 3.16449 3.23309 3.31065 3.59304 4.02587 4.14904 4.30792 4.84541 4.87373 5.03462 5.18801 5.30890 5.34103 5.58915 5.64603 5.72187 5.91593 5.97378 6.00124 6.09742 6.29557 6.47074 6.63776 6.80063 6.81896 7.09703 7.19100 7.46904 7.56025 7.62772 7.78296 8.02203 8.15692 8.42158 8.68738 9.00330 9.13761 10.19531 10.43532 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.006450 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.142128 B = 4340.044027 C = 5889.050383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.051 3.949 4 C 0.123 3.877 5 C -0.129 4.129 6 O -0.547 6.547 7 C 0.452 3.548 8 O -0.404 6.404 9 N -0.655 5.655 10 C 0.369 3.631 11 C -0.354 4.354 12 C -0.036 4.036 13 C -0.304 4.304 14 C 0.271 3.729 15 C -0.425 4.425 16 H 0.083 0.917 17 C 0.059 3.941 18 N -0.659 5.659 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.278 1.278 22 H -0.263 1.263 23 N -0.474 5.474 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.379 0.621 33 H 0.405 0.595 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 -9.520 -2.235 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.027 4.027 4 C 0.078 3.922 5 C -0.187 4.187 6 O -0.353 6.353 7 C 0.232 3.768 8 O -0.267 6.267 9 N -0.303 5.303 10 C 0.130 3.870 11 C -0.379 4.379 12 C -0.061 4.061 13 C -0.327 4.327 14 C 0.146 3.854 15 C -0.456 4.456 16 H 0.101 0.899 17 C -0.170 4.170 18 N -0.278 5.278 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.203 1.203 22 H -0.187 1.187 23 N -0.193 5.193 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.226 0.774 33 H 0.240 0.760 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.903 -9.785 -0.953 10.986 hybrid contribution 0.261 1.030 -0.683 1.263 sum -4.642 -8.755 -1.635 10.044 Atomic orbital electron populations 1.22728 0.81260 1.02401 1.00091 1.87859 1.19336 1.27420 1.95496 1.22925 0.92710 0.84618 1.02415 1.21507 0.91902 0.91335 0.87419 1.21601 1.01976 1.00210 0.94873 1.86530 1.80925 1.52774 1.15066 1.21185 0.83321 0.90150 0.82171 1.91172 1.58995 1.42045 1.34501 1.43319 1.16006 1.08400 1.62594 1.18648 0.89424 0.85675 0.93220 1.20518 1.00043 0.97640 1.19739 1.20575 0.96974 0.92622 0.95896 1.21635 1.00044 0.98344 1.12675 1.18387 0.88752 0.89284 0.89011 1.19584 1.01264 0.95190 1.29550 0.89929 1.26170 0.98365 0.96004 0.96460 1.70324 1.15038 1.16884 1.25571 0.86512 0.80190 0.81838 0.79400 1.19666 1.20320 1.18703 1.68686 1.31681 0.98805 1.20119 0.94215 0.89761 0.94035 0.92776 0.90689 0.90338 0.91717 0.90706 0.77384 0.76034 0.88962 0.88550 0.88521 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.32 9.79 -40.08 -0.39 -5.71 16 3 C 0.05 0.76 4.70 37.16 0.17 0.93 16 4 C 0.12 1.90 1.10 -91.77 -0.10 1.80 16 5 C -0.13 -1.84 8.63 37.15 0.32 -1.52 16 6 O -0.55 -7.59 12.32 -40.08 -0.49 -8.08 16 7 C 0.45 8.92 6.65 -10.98 -0.07 8.85 16 8 O -0.40 -9.74 11.77 5.56 0.07 -9.67 16 9 N -0.66 -12.94 5.26 -11.40 -0.06 -13.00 16 10 C 0.37 8.94 7.43 -154.98 -1.15 7.79 16 11 C -0.35 -7.93 9.96 -38.89 -0.39 -8.32 16 12 C -0.04 -0.83 10.15 -39.39 -0.40 -1.22 16 13 C -0.30 -7.61 9.83 -38.66 -0.38 -7.99 16 14 C 0.27 7.55 6.55 -85.00 -0.56 6.99 16 15 C -0.43 -11.59 9.14 -37.73 -0.34 -11.94 16 16 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 17 C 0.06 1.53 5.50 -17.35 -0.10 1.43 16 18 N -0.66 -17.90 9.00 55.55 0.50 -17.40 16 19 Si 0.90 19.01 29.56 -169.99 -5.02 13.99 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 23 N -0.47 -13.14 5.74 -10.26 -0.06 -13.19 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 28 H 0.07 1.20 7.68 -51.93 -0.40 0.80 16 29 H 0.08 1.05 7.56 -51.93 -0.39 0.66 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.38 4.30 9.04 45.56 0.41 4.71 16 33 H 0.40 6.60 8.22 -40.82 -0.34 6.27 16 34 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 37 H 0.27 6.87 8.29 -40.82 -0.34 6.53 16 LS Contribution 317.05 15.07 4.78 4.78 Total: -1.00 -32.19 317.05 -6.63 -38.83 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -4.07 Total: 11.23 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.88 Total: -1.76 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.38 Total: -43.60 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.82 Total: -23.46 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.19 -6.63 -38.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922154310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.426 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds