Wall clock time and date at job start Tue Mar 31 2020 01:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00242 * 2 1 4 4 C 1.53001 * 109.47358 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.46797 * 304.99565 * 4 3 2 6 6 O 1.42896 * 109.47322 * 64.99593 * 4 3 2 7 7 C 1.50702 * 109.46993 * 184.99755 * 4 3 2 8 8 O 1.21275 * 119.99900 * 24.99600 * 7 4 3 9 9 N 1.34777 * 119.99948 * 204.99677 * 7 4 3 10 10 C 1.39267 * 119.99998 * 174.84594 * 9 7 4 11 11 C 1.39670 * 119.57123 * 185.36134 * 10 9 7 12 12 C 1.38664 * 119.49294 * 179.74301 * 11 10 9 13 13 C 1.38342 * 118.66736 * 0.52460 * 12 11 10 14 14 C 1.40581 * 119.13177 * 359.74099 * 13 12 11 15 15 C 1.41337 * 119.79171 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99790 * 359.97438 * 15 14 13 17 17 C 1.40024 * 120.00370 * 179.97438 * 15 14 13 18 18 N 1.30744 * 120.00048 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00237 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47461 * 89.99369 * 19 17 15 21 21 H 1.48499 * 109.47119 * 209.99574 * 19 17 15 22 22 H 1.48500 * 109.46956 * 329.99533 * 19 17 15 23 23 N 1.31900 * 119.57494 * 5.63463 * 10 9 7 24 24 H 1.09004 * 109.47173 * 60.00395 * 1 2 3 25 25 H 1.09004 * 109.47470 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47279 * 300.00176 * 1 2 3 27 27 H 1.09009 * 109.46697 * 299.99800 * 3 2 1 28 28 H 1.08994 * 109.47267 * 59.99487 * 3 2 1 29 29 H 1.09002 * 109.47235 * 60.00179 * 5 4 3 30 30 H 1.08998 * 109.47382 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.47486 * 300.00054 * 5 4 3 32 32 H 0.96698 * 113.99913 * 60.00044 * 6 4 3 33 33 H 0.97001 * 119.99392 * 354.84650 * 9 7 4 34 34 H 1.07994 * 120.25545 * 0.02562 * 11 10 9 35 35 H 1.07993 * 120.66378 * 180.26966 * 12 11 10 36 36 H 1.08004 * 120.43524 * 179.76766 * 13 12 11 37 37 H 0.96999 * 120.00111 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9789 0.3194 1.1807 6 8 3.9649 0.5795 -1.2219 7 6 4.1480 2.5559 0.1231 8 8 3.5219 3.4550 0.6431 9 7 5.3916 2.7831 -0.3441 10 6 5.9168 4.0729 -0.3276 11 6 7.1597 4.3185 -0.9155 12 6 7.6787 5.6043 -0.9029 13 6 6.9481 6.6090 -0.2940 14 6 5.7057 6.2968 0.2852 15 6 4.9474 7.3125 0.9105 16 1 5.3230 8.3246 0.9426 17 6 3.7092 7.0067 1.4883 18 7 3.2542 5.7816 1.4491 19 14 2.7066 8.3492 2.3141 20 1 1.8055 8.9790 1.3159 21 1 1.8963 7.7590 3.4096 22 1 3.6212 9.3769 2.8732 23 7 5.2366 5.0455 0.2477 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6886 1.8463 -0.8901 28 1 1.6886 1.8464 0.8899 29 1 3.5358 -0.6725 1.0912 30 1 5.0655 0.2337 1.1806 31 1 3.6514 0.7809 2.1122 32 1 3.7176 1.0751 -2.0145 33 1 5.9208 2.0483 -0.6918 34 1 7.7103 3.5141 -1.3803 35 1 8.6359 5.8164 -1.3556 36 1 7.3269 7.6199 -0.2643 37 1 2.3962 5.5698 1.8490 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922154310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:59 Heat of formation + Delta-G solvation = -93.830561 kcal Electronic energy + Delta-G solvation = -22468.483971 eV Core-core repulsion = 19018.226347 eV Total energy + Delta-G solvation = -3450.257624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45671 -39.91031 -38.69583 -37.33886 -35.98553 -34.84972 -32.68510 -32.21670 -30.89873 -28.45112 -27.53292 -26.77808 -24.91730 -23.35653 -22.52298 -20.83822 -19.80417 -18.91417 -18.10390 -17.25307 -17.16051 -16.75018 -16.40307 -16.27778 -15.96436 -15.69046 -15.41054 -14.84204 -14.74167 -14.53182 -13.88381 -13.75594 -13.43893 -13.21434 -13.05828 -12.89164 -12.75377 -12.74191 -12.57142 -12.35034 -12.31445 -11.77827 -11.57537 -11.49310 -10.88605 -10.75952 -10.43411 -9.91239 -9.10741 -8.85368 -8.07525 -6.42968 0.86706 1.22359 1.39557 1.50056 1.52951 1.91679 2.00163 2.25560 2.89091 2.97497 3.14881 3.59171 3.81863 3.86477 4.04499 4.36505 4.40680 4.44972 4.55568 4.57641 4.71612 4.78294 4.81556 4.83505 4.90759 4.95252 5.04584 5.16544 5.27415 5.66902 5.81669 5.91859 6.06357 6.13279 6.33089 6.49940 6.71394 6.81656 7.06308 7.54216 8.31081 8.54840 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.006450 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.142128 B = 4340.044027 C = 5889.050383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.391 6.391 3 C 0.059 3.941 4 C 0.140 3.860 5 C -0.127 4.127 6 O -0.542 6.542 7 C 0.448 3.552 8 O -0.449 6.449 9 N -0.645 5.645 10 C 0.347 3.653 11 C -0.344 4.344 12 C -0.034 4.034 13 C -0.328 4.328 14 C 0.237 3.763 15 C -0.465 4.465 16 H 0.085 0.915 17 C 0.014 3.986 18 N -0.692 5.692 19 Si 0.974 3.026 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.257 1.257 23 N -0.506 5.506 24 H 0.046 0.954 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.391 0.609 33 H 0.422 0.578 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.105 0.895 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -10.704 -2.889 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C -0.019 4.019 4 C 0.095 3.905 5 C -0.184 4.184 6 O -0.349 6.349 7 C 0.230 3.770 8 O -0.315 6.315 9 N -0.294 5.294 10 C 0.109 3.891 11 C -0.370 4.370 12 C -0.058 4.058 13 C -0.351 4.351 14 C 0.111 3.889 15 C -0.496 4.496 16 H 0.103 0.897 17 C -0.212 4.212 18 N -0.311 5.311 19 Si 0.795 3.205 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.180 1.180 23 N -0.226 5.226 24 H 0.065 0.935 25 H 0.126 0.874 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.240 0.760 33 H 0.260 0.740 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.123 0.877 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.606 -11.017 -1.644 12.054 hybrid contribution 0.272 1.265 -0.596 1.424 sum -4.334 -9.752 -2.240 10.904 Atomic orbital electron populations 1.22972 0.79447 1.04156 1.00607 1.87828 1.21273 1.26392 1.95538 1.22727 0.92413 0.85157 1.01629 1.21218 0.91937 0.88707 0.88635 1.21603 1.02508 1.00333 0.93932 1.86521 1.80839 1.52504 1.15033 1.22001 0.82857 0.91409 0.80735 1.91171 1.59982 1.44033 1.36339 1.43298 1.16372 1.07444 1.62269 1.19150 0.90266 0.86668 0.93058 1.20982 0.99258 0.98726 1.17991 1.21039 0.98098 0.92047 0.94662 1.21820 0.99881 0.99654 1.13708 1.18869 0.90150 0.89935 0.89923 1.19900 1.02698 0.95519 1.31486 0.89660 1.26993 0.99021 0.98444 0.96726 1.70499 1.15303 1.18804 1.26531 0.85343 0.78329 0.78627 0.78239 1.19099 1.19771 1.18047 1.68650 1.33099 0.99413 1.21403 0.93488 0.87393 0.93777 0.92845 0.92384 0.89070 0.91013 0.91424 0.75976 0.74017 0.85185 0.84536 0.87725 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 11.01 113.37 1.25 1.72 16 2 O -0.39 -10.27 9.79 -144.34 -1.41 -11.68 16 3 C 0.06 1.72 4.70 71.98 0.34 2.06 16 4 C 0.14 4.17 1.10 -11.54 -0.01 4.16 16 5 C -0.13 -3.43 8.63 71.98 0.62 -2.81 16 6 O -0.54 -13.83 12.32 -144.34 -1.78 -15.61 16 7 C 0.45 17.70 6.65 87.66 0.58 18.28 16 8 O -0.45 -22.34 11.77 -3.01 -0.04 -22.37 16 9 N -0.64 -24.91 5.26 -308.37 -1.62 -26.53 16 10 C 0.35 16.71 7.43 133.25 0.99 17.70 16 11 C -0.34 -14.70 9.96 22.72 0.23 -14.47 16 12 C -0.03 -1.49 10.15 22.40 0.23 -1.26 16 13 C -0.33 -16.49 9.83 22.87 0.22 -16.26 16 14 C 0.24 13.58 6.55 40.19 0.26 13.84 16 15 C -0.47 -26.28 9.14 23.47 0.21 -26.06 16 16 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 17 C 0.01 0.72 5.50 85.29 0.47 1.19 16 18 N -0.69 -39.02 9.00 21.84 0.20 -38.82 16 19 Si 0.97 40.11 29.56 68.60 2.03 42.14 16 20 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 23 N -0.51 -28.72 5.74 -186.36 -1.07 -29.79 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.06 1.90 7.68 -2.39 -0.02 1.88 16 29 H 0.09 2.26 7.56 -2.39 -0.02 2.24 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.39 8.03 9.04 -74.06 -0.67 7.36 16 33 H 0.42 12.87 8.22 -92.71 -0.76 12.11 16 34 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 35 H 0.14 4.74 8.06 -2.91 -0.02 4.71 16 36 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 37 H 0.27 14.29 8.29 -92.71 -0.77 13.52 16 Total: -1.00 -71.37 317.05 1.37 -70.00 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: -0.33 Total: 34.58 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.39 Total: -1.91 kcal Atomic # 7 Polarization: -92.65 SS G_CDS: -2.49 Total: -95.14 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -3.23 Total: -49.67 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -71.37 1.37 -70.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922154310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.829 kcal (2) G-P(sol) polarization free energy of solvation -71.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds