Wall clock time and date at job start Tue Mar 31 2020 01:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47499 * 2 1 4 4 N 1.46903 * 109.47321 * 240.00149 * 2 1 3 5 5 C 1.46896 * 111.00106 * 84.99663 * 4 2 1 6 6 C 1.52996 * 109.47256 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47066 * 60.00378 * 6 5 4 8 8 O 1.42903 * 109.47446 * 300.00254 * 6 5 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 6 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.50697 * 109.47277 * 120.00301 * 2 1 3 18 18 C 1.38253 * 120.00474 * 79.72341 * 17 2 1 19 19 C 1.38213 * 120.00474 * 179.76946 * 18 17 2 20 20 C 1.38254 * 119.99684 * 0.50836 * 19 18 17 21 21 C 1.38216 * 119.99915 * 359.74464 * 20 19 18 22 22 N 1.48018 * 119.99705 * 179.97438 * 21 20 19 23 23 O 1.21802 * 120.00068 * 180.02562 * 22 21 20 24 24 O 1.21803 * 120.00270 * 0.02672 * 22 21 20 25 25 C 1.38219 * 119.99928 * 260.00073 * 17 2 1 26 26 H 1.09000 * 109.47206 * 299.99902 * 1 2 3 27 27 H 1.09002 * 109.46947 * 59.99698 * 1 2 3 28 28 H 1.09002 * 109.47432 * 179.97438 * 1 2 3 29 29 H 1.00900 * 110.99721 * 321.04965 * 4 2 1 30 30 H 1.09004 * 109.46774 * 60.00282 * 5 4 2 31 31 H 1.09000 * 109.47723 * 300.00671 * 5 4 2 32 32 H 0.96697 * 113.99557 * 300.00558 * 8 6 5 33 33 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 34 34 H 1.08004 * 119.99573 * 0.02562 * 18 17 2 35 35 H 1.08000 * 119.99905 * 180.23078 * 19 18 17 36 36 H 1.08000 * 120.00079 * 179.72674 * 20 19 18 37 37 H 1.07998 * 119.99433 * 0.02562 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5950 -0.5331 -3.5745 7 1 1.9183 -1.3565 -3.8030 8 8 3.8999 -1.0498 -3.3053 9 6 2.6600 0.4058 -4.7515 10 1 2.3655 1.4384 -4.6354 11 6 3.1013 -0.0519 -5.9750 12 7 3.4602 -1.3092 -6.1161 13 14 3.1890 1.1138 -7.4319 14 1 4.1105 2.2343 -7.1145 15 1 3.6912 0.3814 -8.6222 16 1 1.8349 1.6523 -7.7175 17 6 2.0323 -0.7104 1.2304 18 6 2.0614 -2.0922 1.2674 19 6 2.5266 -2.7437 2.3941 20 6 2.9530 -2.0138 3.4881 21 6 2.9191 -0.6325 3.4530 22 7 3.3751 0.1489 4.6245 23 8 3.3447 1.3662 4.5939 24 8 3.7807 -0.4253 5.6192 25 6 2.4586 0.0193 2.3241 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.4495 -1.4978 -1.4101 30 1 2.7588 1.0462 -2.1182 31 1 1.0871 0.6164 -2.5526 32 1 4.5555 -0.3712 -3.0935 33 1 3.7703 -1.6313 -6.9770 34 1 1.7245 -2.6624 0.4143 35 1 2.5528 -3.8231 2.4215 36 1 3.3124 -2.5229 4.3701 37 1 2.4313 1.0986 2.2970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930208357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:08 Heat of formation + Delta-G solvation = -33.039884 kcal Electronic energy + Delta-G solvation = -21211.281695 eV Core-core repulsion = 17763.660152 eV Total energy + Delta-G solvation = -3447.621543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.25731 -39.90959 -37.15138 -36.64443 -35.25551 -32.18898 -32.03688 -31.85674 -29.48566 -27.49801 -26.64602 -24.67913 -23.41982 -22.82810 -21.04079 -20.72682 -18.81811 -18.66037 -17.61053 -17.04843 -16.74106 -15.77748 -15.56196 -14.78573 -14.64687 -14.35070 -14.17331 -13.90989 -13.58798 -13.15256 -12.77251 -12.58075 -12.39780 -12.26446 -11.72354 -11.66096 -11.35037 -11.23610 -11.20314 -11.14527 -10.97504 -10.86291 -10.84644 -10.14523 -9.70618 -9.33698 -9.11326 -8.64427 -8.23948 -7.97559 -6.07602 -4.26541 -0.24438 0.78579 1.28007 1.31521 3.14350 3.23978 3.29909 3.31143 4.05035 4.29081 4.31266 4.54258 4.63577 4.75415 4.81386 4.89083 5.11636 5.17859 5.20462 5.33811 5.50019 5.63943 5.64560 5.84863 5.90277 6.01011 6.05011 6.11084 6.17692 6.37671 6.39332 6.71497 7.32277 7.54723 7.54960 7.71388 7.77574 8.11152 8.76736 9.37912 9.53926 10.96493 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030137 B = 0.003225 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.879162 B = 8681.231110 C = 8810.210109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.116 3.884 3 H 0.090 0.910 4 N -0.672 5.672 5 C 0.034 3.966 6 C 0.236 3.764 7 H 0.052 0.948 8 O -0.555 6.555 9 C -0.577 4.577 10 H 0.054 0.946 11 C 0.080 3.920 12 N -0.858 5.858 13 Si 0.890 3.110 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.054 4.054 18 C -0.042 4.042 19 C -0.117 4.117 20 C -0.064 4.064 21 C -0.046 4.046 22 N 0.031 4.969 23 O -0.165 6.165 24 O -0.168 6.168 25 C -0.055 4.055 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.338 0.662 30 H 0.063 0.937 31 H 0.027 0.973 32 H 0.344 0.656 33 H 0.261 0.739 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -1.422 16.168 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.005 3.995 3 H 0.108 0.892 4 N -0.303 5.303 5 C -0.094 4.094 6 C 0.177 3.823 7 H 0.069 0.931 8 O -0.357 6.357 9 C -0.615 4.615 10 H 0.073 0.927 11 C -0.126 4.126 12 N -0.493 5.493 13 Si 0.717 3.283 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.056 4.056 18 C -0.061 4.061 19 C -0.136 4.136 20 C -0.084 4.084 21 C -0.129 4.129 22 N 0.550 4.450 23 O -0.380 6.380 24 O -0.383 6.383 25 C -0.074 4.074 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.187 0.813 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.929 -2.439 15.509 16.455 hybrid contribution -0.511 1.532 -0.672 1.749 sum -5.440 -0.907 14.837 15.829 Atomic orbital electron populations 1.22511 0.95981 1.02544 1.02721 1.20515 0.92757 0.97691 0.88513 0.89185 1.60610 1.56137 1.09883 1.03633 1.22975 0.99218 0.95677 0.91562 1.19290 0.82657 0.92846 0.87469 0.93057 1.86549 1.20364 1.36741 1.92067 1.21585 1.47866 0.96801 0.95265 0.92734 1.25022 0.94096 0.94895 0.98601 1.70064 1.40924 1.14130 1.24228 0.86722 0.78486 0.81086 0.81982 1.20093 1.21156 1.20193 1.19957 0.97450 0.93767 0.94406 1.21512 0.92989 0.94195 0.97381 1.21229 0.99211 1.00953 0.92208 1.21014 0.96323 0.90714 1.00314 1.21036 1.11623 0.92054 0.88201 1.43671 0.97958 1.01338 1.02065 1.94538 1.59092 0.95740 1.88646 1.94517 1.48302 1.72757 1.22677 1.20887 0.94424 1.01930 0.90199 0.92187 0.91432 0.92161 0.84302 0.91893 0.95508 0.81263 0.92874 0.83824 0.83615 0.83312 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.14 37.15 0.34 -1.47 16 2 C 0.12 1.37 2.79 -68.87 -0.19 1.18 16 3 H 0.09 1.09 7.66 -51.93 -0.40 0.70 16 4 N -0.67 -10.05 5.58 -107.96 -0.60 -10.65 16 5 C 0.03 0.62 5.08 -3.83 -0.02 0.61 16 6 C 0.24 5.57 3.03 -27.88 -0.08 5.49 16 7 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 8 O -0.56 -13.76 12.59 -35.23 -0.44 -14.20 16 9 C -0.58 -15.16 8.76 -34.44 -0.30 -15.46 16 10 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 11 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 12 N -0.86 -24.70 12.83 55.43 0.71 -23.98 16 13 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 C -0.05 -0.60 4.95 -104.62 -0.52 -1.12 16 18 C -0.04 -0.42 9.32 -39.59 -0.37 -0.79 16 19 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 20 C -0.06 -0.63 9.56 -39.58 -0.38 -1.01 16 21 C -0.05 -0.55 6.85 -79.95 -0.55 -1.10 16 22 N 0.03 0.43 4.45 33.96 0.15 0.58 16 23 O -0.16 -2.39 18.45 -29.46 -0.54 -2.94 16 24 O -0.17 -2.35 18.45 -29.46 -0.54 -2.90 16 25 C -0.05 -0.62 9.18 -39.58 -0.36 -0.98 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.74 7.45 -51.93 -0.39 0.35 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.34 4.85 7.82 -39.29 -0.31 4.55 16 30 H 0.06 1.16 8.06 -51.93 -0.42 0.75 16 31 H 0.03 0.48 7.44 -51.93 -0.39 0.09 16 32 H 0.34 7.79 9.04 45.56 0.41 8.20 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.14 1.32 7.26 -52.48 -0.38 0.94 16 35 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.15 1.22 7.61 -52.49 -0.40 0.82 16 37 H 0.15 1.57 7.59 -52.49 -0.40 1.17 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -30.40 325.77 -8.21 -38.61 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -3.89 Total: 8.97 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -2.93 Total: -13.98 kcal Atomic # 7 Polarization: -34.31 SS G_CDS: 0.26 Total: -34.05 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -1.53 Total: -20.04 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.40 -8.21 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930208357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.569 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds