Wall clock time and date at job start Tue Mar 31 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47499 * 2 1 4 4 N 1.46903 * 109.47321 * 240.00149 * 2 1 3 5 5 C 1.46896 * 111.00106 * 84.99663 * 4 2 1 6 6 C 1.52996 * 109.47256 * 180.02562 * 5 4 2 7 7 H 1.09004 * 109.47066 * 60.00378 * 6 5 4 8 8 O 1.42903 * 109.47446 * 300.00254 * 6 5 4 9 9 C 1.50702 * 109.47159 * 180.02562 * 6 5 4 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 6 5 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 6 5 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 6 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 6 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.50697 * 109.47277 * 120.00301 * 2 1 3 18 18 C 1.38253 * 120.00474 * 79.72341 * 17 2 1 19 19 C 1.38213 * 120.00474 * 179.76946 * 18 17 2 20 20 C 1.38254 * 119.99684 * 0.50836 * 19 18 17 21 21 C 1.38216 * 119.99915 * 359.74464 * 20 19 18 22 22 N 1.48018 * 119.99705 * 179.97438 * 21 20 19 23 23 O 1.21802 * 120.00068 * 180.02562 * 22 21 20 24 24 O 1.21803 * 120.00270 * 0.02672 * 22 21 20 25 25 C 1.38219 * 119.99928 * 260.00073 * 17 2 1 26 26 H 1.09000 * 109.47206 * 299.99902 * 1 2 3 27 27 H 1.09002 * 109.46947 * 59.99698 * 1 2 3 28 28 H 1.09002 * 109.47432 * 179.97438 * 1 2 3 29 29 H 1.00900 * 110.99721 * 321.04965 * 4 2 1 30 30 H 1.09004 * 109.46774 * 60.00282 * 5 4 2 31 31 H 1.09000 * 109.47723 * 300.00671 * 5 4 2 32 32 H 0.96697 * 113.99557 * 300.00558 * 8 6 5 33 33 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 34 34 H 1.08004 * 119.99573 * 0.02562 * 18 17 2 35 35 H 1.08000 * 119.99905 * 180.23078 * 19 18 17 36 36 H 1.08000 * 120.00079 * 179.72674 * 20 19 18 37 37 H 1.07998 * 119.99433 * 0.02562 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5950 -0.5331 -3.5745 7 1 1.9183 -1.3565 -3.8030 8 8 3.8999 -1.0498 -3.3053 9 6 2.6600 0.4058 -4.7515 10 1 2.3655 1.4384 -4.6354 11 6 3.1013 -0.0519 -5.9750 12 7 3.4602 -1.3092 -6.1161 13 14 3.1890 1.1138 -7.4319 14 1 4.1105 2.2343 -7.1145 15 1 3.6912 0.3814 -8.6222 16 1 1.8349 1.6523 -7.7175 17 6 2.0323 -0.7104 1.2304 18 6 2.0614 -2.0922 1.2674 19 6 2.5266 -2.7437 2.3941 20 6 2.9530 -2.0138 3.4881 21 6 2.9191 -0.6325 3.4530 22 7 3.3751 0.1489 4.6245 23 8 3.3447 1.3662 4.5939 24 8 3.7807 -0.4253 5.6192 25 6 2.4586 0.0193 2.3241 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.4495 -1.4978 -1.4101 30 1 2.7588 1.0462 -2.1182 31 1 1.0871 0.6164 -2.5526 32 1 4.5555 -0.3712 -3.0935 33 1 3.7703 -1.6313 -6.9770 34 1 1.7245 -2.6624 0.4143 35 1 2.5528 -3.8231 2.4215 36 1 3.3124 -2.5229 4.3701 37 1 2.4313 1.0986 2.2970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930208357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:07 Heat of formation + Delta-G solvation = -53.333703 kcal Electronic energy + Delta-G solvation = -21212.161701 eV Core-core repulsion = 17763.660152 eV Total energy + Delta-G solvation = -3448.501549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.26314 -40.78055 -38.51408 -37.69921 -36.79570 -34.21406 -33.10964 -32.80543 -30.60556 -29.06149 -27.62241 -26.18567 -24.55619 -23.69976 -22.42437 -22.00745 -19.81525 -19.66038 -18.97186 -18.62748 -17.59014 -16.92787 -16.67749 -16.57840 -16.02811 -15.73065 -15.32046 -15.01148 -14.69162 -14.45682 -14.21806 -13.59190 -13.39986 -13.18816 -13.12588 -12.83325 -12.79406 -12.71351 -12.57281 -12.50682 -12.32715 -12.20943 -12.06670 -11.93198 -11.01838 -10.69823 -10.51497 -10.19742 -10.04818 -9.26017 -8.13149 -6.38357 -1.21112 0.00147 0.34384 0.37744 1.41691 1.42346 1.50375 2.32903 2.39288 3.09618 3.14142 3.50927 3.52124 3.85183 3.93838 3.99803 4.02130 4.22986 4.33381 4.35275 4.47937 4.58501 4.62975 4.72446 4.84178 4.88140 5.03948 5.08579 5.13232 5.21041 5.28208 5.55291 5.61657 5.77826 6.00930 6.16196 6.47428 6.47713 6.75159 7.35873 7.62074 8.90760 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030137 B = 0.003225 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.879162 B = 8681.231110 C = 8810.210109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.120 3.880 3 H 0.086 0.914 4 N -0.676 5.676 5 C 0.056 3.944 6 C 0.234 3.766 7 H 0.023 0.977 8 O -0.570 6.570 9 C -0.589 4.589 10 H 0.059 0.941 11 C 0.027 3.973 12 N -0.898 5.898 13 Si 0.956 3.044 14 H -0.269 1.269 15 H -0.286 1.286 16 H -0.268 1.268 17 C -0.062 4.062 18 C -0.044 4.044 19 C -0.106 4.106 20 C -0.060 4.060 21 C -0.062 4.062 22 N 0.033 4.967 23 O -0.195 6.195 24 O -0.171 6.171 25 C -0.060 4.060 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.342 0.658 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.352 0.648 33 H 0.261 0.739 34 H 0.153 0.847 35 H 0.180 0.820 36 H 0.166 0.834 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.669 -1.707 16.585 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 H 0.104 0.896 4 N -0.307 5.307 5 C -0.073 4.073 6 C 0.176 3.824 7 H 0.041 0.959 8 O -0.373 6.373 9 C -0.628 4.628 10 H 0.077 0.923 11 C -0.175 4.175 12 N -0.535 5.535 13 Si 0.781 3.219 14 H -0.194 1.194 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.063 4.063 18 C -0.062 4.062 19 C -0.124 4.124 20 C -0.079 4.079 21 C -0.146 4.146 22 N 0.547 4.453 23 O -0.404 6.404 24 O -0.387 6.387 25 C -0.080 4.080 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.171 0.829 35 H 0.198 0.802 36 H 0.184 0.816 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.474 -2.664 15.944 17.067 hybrid contribution -0.356 1.521 -0.760 1.737 sum -5.830 -1.143 15.184 16.305 Atomic orbital electron populations 1.22441 0.94467 1.03301 1.02943 1.20479 0.93945 0.97238 0.87357 0.89610 1.60473 1.57174 1.09671 1.03374 1.22488 0.98996 0.95182 0.90683 1.19188 0.81996 0.91859 0.89367 0.95931 1.86494 1.21110 1.37505 1.92235 1.22041 1.46976 0.97378 0.96361 0.92323 1.25849 0.93860 0.96305 1.01507 1.70198 1.42437 1.16022 1.24830 0.85675 0.78786 0.79009 0.78465 1.19419 1.21196 1.19315 1.19844 0.98298 0.94327 0.93851 1.21750 0.92477 0.93786 0.98203 1.21585 0.97428 1.02509 0.90867 1.21341 0.95436 0.89832 1.01320 1.21216 1.12966 0.92756 0.87622 1.43955 0.97580 1.01319 1.02480 1.94531 1.60388 0.96470 1.89060 1.94489 1.48264 1.72609 1.23361 1.20910 0.94595 1.02156 0.90297 0.90850 0.92270 0.91168 0.83857 0.92026 0.95034 0.80418 0.93046 0.82926 0.80222 0.81609 0.83231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 9.14 71.98 0.66 -2.53 16 2 C 0.12 2.66 2.79 44.17 0.12 2.79 16 3 H 0.09 1.99 7.66 -2.38 -0.02 1.97 16 4 N -0.68 -19.44 5.58 -495.46 -2.76 -22.20 16 5 C 0.06 2.00 5.08 86.30 0.44 2.44 16 6 C 0.23 11.11 3.03 29.85 0.09 11.20 16 7 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 8 O -0.57 -28.40 12.59 -148.98 -1.87 -30.27 16 9 C -0.59 -30.90 8.76 25.60 0.22 -30.68 16 10 H 0.06 2.96 7.74 -2.91 -0.02 2.93 16 11 C 0.03 1.49 5.40 84.66 0.46 1.94 16 12 N -0.90 -52.23 12.83 21.45 0.28 -51.95 16 13 Si 0.96 42.10 29.54 68.60 2.03 44.13 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 17 C -0.06 -1.26 4.95 -19.87 -0.10 -1.36 16 18 C -0.04 -0.76 9.32 22.27 0.21 -0.55 16 19 C -0.11 -1.47 10.05 22.27 0.22 -1.24 16 20 C -0.06 -1.02 9.56 22.27 0.21 -0.81 16 21 C -0.06 -1.40 6.85 36.37 0.25 -1.15 16 22 N 0.03 0.88 4.45 -46.47 -0.21 0.67 16 23 O -0.19 -5.73 18.45 18.88 0.35 -5.38 16 24 O -0.17 -4.67 18.45 18.88 0.35 -4.32 16 25 C -0.06 -1.29 9.18 22.27 0.20 -1.09 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 28 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 29 H 0.34 9.41 7.82 -89.69 -0.70 8.71 16 30 H 0.06 2.23 8.06 -2.38 -0.02 2.21 16 31 H 0.03 1.10 7.44 -2.39 -0.02 1.08 16 32 H 0.35 15.95 9.04 -74.06 -0.67 15.28 16 33 H 0.26 14.45 8.31 -92.70 -0.77 13.68 16 34 H 0.15 2.38 7.26 -2.91 -0.02 2.36 16 35 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.17 2.23 7.61 -2.91 -0.02 2.21 16 37 H 0.15 3.12 7.59 -2.91 -0.02 3.10 16 Total: -1.00 -65.08 325.77 0.88 -64.20 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.26 Total: 26.17 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 2.99 Total: -21.04 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -2.70 Total: -73.48 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.18 Total: -39.97 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -65.08 0.88 -64.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930208357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.865 kcal (2) G-P(sol) polarization free energy of solvation -65.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds