Wall clock time and date at job start Tue Mar 31 2020 01:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46961 * 2 1 4 4 N 1.46901 * 109.46830 * 239.99960 * 2 1 3 5 5 C 1.46900 * 111.00005 * 85.00066 * 4 2 1 6 6 C 1.52999 * 109.47170 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.46785 * 60.00718 * 6 5 4 8 8 O 1.42892 * 109.47075 * 300.00074 * 6 5 4 9 9 C 1.50701 * 109.47115 * 180.02562 * 6 5 4 10 10 H 1.08006 * 119.99779 * 359.97438 * 9 6 5 11 11 C 1.37869 * 120.00276 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00400 * 179.97438 * 11 9 6 13 13 Si 1.86804 * 119.99768 * 359.97438 * 11 9 6 14 14 H 1.48501 * 109.47132 * 90.00177 * 13 11 9 15 15 H 1.48506 * 109.47033 * 210.00272 * 13 11 9 16 16 H 1.48498 * 109.47189 * 330.00209 * 13 11 9 17 17 C 1.50698 * 109.47052 * 120.00356 * 2 1 3 18 18 C 1.38238 * 120.00189 * 80.20928 * 17 2 1 19 19 C 1.38233 * 119.99747 * 180.26170 * 18 17 2 20 20 C 1.38234 * 120.00037 * 359.50225 * 19 18 17 21 21 N 1.48025 * 119.99960 * 180.26108 * 20 19 18 22 22 O 1.21793 * 119.99912 * 359.97438 * 21 20 19 23 23 O 1.21799 * 119.99930 * 180.02562 * 21 20 19 24 24 C 1.38235 * 120.00220 * 0.28719 * 20 19 18 25 25 C 1.38234 * 119.99720 * 259.99716 * 17 2 1 26 26 H 1.09002 * 109.46961 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47167 * 299.99858 * 1 2 3 28 28 H 1.08998 * 109.47358 * 59.99712 * 1 2 3 29 29 H 1.00897 * 111.00350 * 321.04953 * 4 2 1 30 30 H 1.09000 * 109.47053 * 300.00297 * 5 4 2 31 31 H 1.09005 * 109.46896 * 59.99886 * 5 4 2 32 32 H 0.96701 * 114.00291 * 299.99595 * 8 6 5 33 33 H 0.97000 * 120.00184 * 179.97438 * 12 11 9 34 34 H 1.07998 * 119.99820 * 0.03585 * 18 17 2 35 35 H 1.08002 * 120.00157 * 179.78843 * 19 18 17 36 36 H 1.08005 * 120.00199 * 179.97438 * 24 20 19 37 37 H 1.08001 * 120.00294 * 0.02562 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5961 -0.5329 -3.5742 7 1 1.9199 -1.3566 -3.8031 8 8 3.9011 -1.0486 -3.3043 9 6 2.6611 0.4060 -4.7512 10 1 2.3651 1.4383 -4.6355 11 6 3.0973 -0.0529 -5.9759 12 7 3.1536 0.7663 -7.0032 13 14 3.6085 -1.8384 -6.1762 14 1 2.4290 -2.6497 -6.5709 15 1 4.6529 -1.9394 -7.2270 16 1 4.1499 -2.3456 -4.8898 17 6 2.0323 -0.7105 1.2304 18 6 2.0708 -2.0919 1.2636 19 6 2.5265 -2.7436 2.3943 20 6 2.9534 -2.0138 3.4879 21 7 3.4468 -2.7116 4.6965 22 8 3.4762 -3.9288 4.7276 23 8 3.8225 -2.0686 5.6603 24 6 2.9190 -0.6323 3.4531 25 6 2.4587 0.0193 2.3242 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.4495 -1.4979 -1.4101 30 1 1.0870 0.6163 -2.5525 31 1 2.7588 1.0462 -2.1182 32 1 4.5563 -0.3697 -3.0924 33 1 3.4608 0.4435 -7.8647 34 1 1.7414 -2.6620 0.4075 35 1 2.5534 -3.8230 2.4216 36 1 3.2521 -0.0621 4.3077 37 1 2.4315 1.0987 2.2972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930594405.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:10 Heat of formation + Delta-G solvation = -28.173959 kcal Electronic energy + Delta-G solvation = -21184.421516 eV Core-core repulsion = 17737.010976 eV Total energy + Delta-G solvation = -3447.410540 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.29409 -39.99753 -37.36423 -36.68853 -35.60281 -32.31839 -32.29205 -31.61167 -30.03032 -27.85549 -26.65398 -24.49028 -23.59316 -22.84562 -20.98352 -20.63558 -19.50549 -18.77421 -17.64883 -17.39670 -16.53051 -15.78001 -15.32952 -15.02905 -14.73691 -14.46262 -14.27125 -13.98242 -13.88014 -13.31272 -13.23285 -12.80193 -12.64671 -12.08964 -11.81950 -11.70881 -11.55068 -11.41479 -11.33548 -11.27621 -11.21763 -10.98727 -10.46346 -10.03662 -9.61461 -9.53973 -9.14257 -8.70105 -8.40069 -8.14768 -6.20936 -4.33404 -0.30730 0.75844 1.20934 1.28437 3.07460 3.33026 3.43714 3.69956 4.03713 4.19737 4.27744 4.44553 4.46946 4.72510 4.74780 4.94147 4.99623 5.08839 5.14366 5.34435 5.40763 5.52799 5.54268 5.66670 5.74910 5.84485 5.88433 6.04208 6.06421 6.09227 6.33247 6.47869 7.10860 7.18614 7.46091 7.51047 7.58178 8.20312 8.74487 9.00585 9.43495 10.89555 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.003414 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.517814 B = 8198.758491 C = 8734.836477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.109 3.891 3 H 0.094 0.906 4 N -0.675 5.675 5 C 0.044 3.956 6 C 0.200 3.800 7 H 0.051 0.949 8 O -0.571 6.571 9 C -0.568 4.568 10 H 0.071 0.929 11 C 0.084 3.916 12 N -0.892 5.892 13 Si 0.872 3.128 14 H -0.288 1.288 15 H -0.295 1.295 16 H -0.216 1.216 17 C -0.003 4.003 18 C -0.096 4.096 19 C -0.054 4.054 20 C -0.056 4.056 21 N 0.032 4.968 22 O -0.166 6.166 23 O -0.169 6.169 24 C -0.054 4.054 25 C -0.118 4.118 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.339 0.661 30 H 0.032 0.968 31 H 0.069 0.931 32 H 0.355 0.645 33 H 0.266 0.734 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.470 -2.501 18.714 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.001 4.001 3 H 0.112 0.888 4 N -0.306 5.306 5 C -0.085 4.085 6 C 0.142 3.858 7 H 0.069 0.931 8 O -0.377 6.377 9 C -0.606 4.606 10 H 0.089 0.911 11 C -0.121 4.121 12 N -0.529 5.529 13 Si 0.698 3.302 14 H -0.215 1.215 15 H -0.222 1.222 16 H -0.138 1.138 17 C -0.004 4.004 18 C -0.114 4.114 19 C -0.073 4.073 20 C -0.139 4.139 21 N 0.550 4.450 22 O -0.381 6.381 23 O -0.383 6.383 24 C -0.074 4.074 25 C -0.137 4.137 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.157 0.843 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.201 0.799 33 H 0.075 0.925 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.293 -2.628 17.998 18.689 hybrid contribution -0.379 -0.242 -0.181 0.485 sum -4.672 -2.870 17.817 18.642 Atomic orbital electron populations 1.22504 0.95623 1.02716 1.02954 1.20633 0.93039 0.97865 0.88584 0.88806 1.60632 1.56261 1.09933 1.03740 1.22733 0.99714 0.95436 0.90581 1.19691 0.82513 0.93398 0.90239 0.93148 1.86660 1.20887 1.38119 1.91988 1.21470 1.47471 0.98057 0.93597 0.91089 1.24994 0.93299 0.98505 0.95286 1.69951 1.45573 1.36042 1.01351 0.87012 0.78474 0.84894 0.79790 1.21498 1.22221 1.13801 1.20459 0.91419 0.93957 0.94582 1.21041 0.99180 0.94179 0.97041 1.21073 0.93917 1.01784 0.90546 1.21096 1.11933 0.93137 0.87690 1.43669 0.97999 1.01123 1.02227 1.94531 1.59166 0.95827 1.88612 1.94520 1.49907 1.67202 1.26693 1.20984 0.95485 0.91273 0.99617 1.21080 0.99718 1.01007 0.91863 0.92077 0.91984 0.91257 0.84276 0.94942 0.91287 0.79862 0.92493 0.83481 0.83139 0.83186 0.83707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 9.14 37.16 0.34 -1.25 16 2 C 0.11 1.12 2.79 -68.86 -0.19 0.93 16 3 H 0.09 0.96 7.66 -51.93 -0.40 0.56 16 4 N -0.68 -9.02 5.57 -107.95 -0.60 -9.62 16 5 C 0.04 0.73 5.08 -3.82 -0.02 0.71 16 6 C 0.20 4.25 2.52 -27.88 -0.07 4.18 16 7 H 0.05 1.10 7.57 -51.93 -0.39 0.71 16 8 O -0.57 -12.21 10.01 -35.23 -0.35 -12.56 16 9 C -0.57 -14.92 9.34 -34.44 -0.32 -15.24 16 10 H 0.07 2.01 7.99 -52.48 -0.42 1.60 16 11 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 12 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 13 Si 0.87 21.12 26.99 -169.99 -4.59 16.53 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.22 -5.11 5.31 56.52 0.30 -4.81 16 17 C 0.00 -0.03 4.96 -104.62 -0.52 -0.55 16 18 C -0.10 -0.93 9.33 -39.58 -0.37 -1.30 16 19 C -0.05 -0.55 9.56 -39.58 -0.38 -0.93 16 20 C -0.06 -0.62 6.85 -79.95 -0.55 -1.17 16 21 N 0.03 0.42 4.45 33.96 0.15 0.57 16 22 O -0.17 -2.31 18.45 -29.46 -0.54 -2.85 16 23 O -0.17 -2.30 18.45 -29.46 -0.54 -2.84 16 24 C -0.05 -0.51 9.56 -39.58 -0.38 -0.89 16 25 C -0.12 -1.01 9.67 -39.58 -0.38 -1.39 16 26 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 29 H 0.34 4.30 7.82 -39.29 -0.31 3.99 16 30 H 0.03 0.54 7.44 -51.93 -0.39 0.15 16 31 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 32 H 0.36 6.91 9.04 45.56 0.41 7.32 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.15 1.31 7.24 -52.49 -0.38 0.93 16 35 H 0.15 1.35 7.61 -52.49 -0.40 0.95 16 36 H 0.15 1.18 7.61 -52.48 -0.40 0.78 16 37 H 0.15 0.90 8.04 -52.49 -0.42 0.48 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -31.02 319.75 -7.80 -38.82 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.98 Total: 7.51 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.94 Total: -14.65 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.32 Total: -34.77 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -1.44 Total: -18.26 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.59 Total: 16.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.02 -7.80 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930594405.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.650 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds