Wall clock time and date at job start Tue Mar 31 2020 01:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46961 * 2 1 4 4 N 1.46901 * 109.46830 * 239.99960 * 2 1 3 5 5 C 1.46900 * 111.00005 * 85.00066 * 4 2 1 6 6 C 1.52999 * 109.47170 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.46785 * 60.00718 * 6 5 4 8 8 O 1.42892 * 109.47075 * 300.00074 * 6 5 4 9 9 C 1.50701 * 109.47115 * 180.02562 * 6 5 4 10 10 H 1.08006 * 119.99779 * 359.97438 * 9 6 5 11 11 C 1.37869 * 120.00276 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00400 * 179.97438 * 11 9 6 13 13 Si 1.86804 * 119.99768 * 359.97438 * 11 9 6 14 14 H 1.48501 * 109.47132 * 90.00177 * 13 11 9 15 15 H 1.48506 * 109.47033 * 210.00272 * 13 11 9 16 16 H 1.48498 * 109.47189 * 330.00209 * 13 11 9 17 17 C 1.50698 * 109.47052 * 120.00356 * 2 1 3 18 18 C 1.38238 * 120.00189 * 80.20928 * 17 2 1 19 19 C 1.38233 * 119.99747 * 180.26170 * 18 17 2 20 20 C 1.38234 * 120.00037 * 359.50225 * 19 18 17 21 21 N 1.48025 * 119.99960 * 180.26108 * 20 19 18 22 22 O 1.21793 * 119.99912 * 359.97438 * 21 20 19 23 23 O 1.21799 * 119.99930 * 180.02562 * 21 20 19 24 24 C 1.38235 * 120.00220 * 0.28719 * 20 19 18 25 25 C 1.38234 * 119.99720 * 259.99716 * 17 2 1 26 26 H 1.09002 * 109.46961 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47167 * 299.99858 * 1 2 3 28 28 H 1.08998 * 109.47358 * 59.99712 * 1 2 3 29 29 H 1.00897 * 111.00350 * 321.04953 * 4 2 1 30 30 H 1.09000 * 109.47053 * 300.00297 * 5 4 2 31 31 H 1.09005 * 109.46896 * 59.99886 * 5 4 2 32 32 H 0.96701 * 114.00291 * 299.99595 * 8 6 5 33 33 H 0.97000 * 120.00184 * 179.97438 * 12 11 9 34 34 H 1.07998 * 119.99820 * 0.03585 * 18 17 2 35 35 H 1.08002 * 120.00157 * 179.78843 * 19 18 17 36 36 H 1.08005 * 120.00199 * 179.97438 * 24 20 19 37 37 H 1.08001 * 120.00294 * 0.02562 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2226 -2.3469 6 6 2.5961 -0.5329 -3.5742 7 1 1.9199 -1.3566 -3.8031 8 8 3.9011 -1.0486 -3.3043 9 6 2.6611 0.4060 -4.7512 10 1 2.3651 1.4383 -4.6355 11 6 3.0973 -0.0529 -5.9759 12 7 3.1536 0.7663 -7.0032 13 14 3.6085 -1.8384 -6.1762 14 1 2.4290 -2.6497 -6.5709 15 1 4.6529 -1.9394 -7.2270 16 1 4.1499 -2.3456 -4.8898 17 6 2.0323 -0.7105 1.2304 18 6 2.0708 -2.0919 1.2636 19 6 2.5265 -2.7436 2.3943 20 6 2.9534 -2.0138 3.4879 21 7 3.4468 -2.7116 4.6965 22 8 3.4762 -3.9288 4.7276 23 8 3.8225 -2.0686 5.6603 24 6 2.9190 -0.6323 3.4531 25 6 2.4587 0.0193 2.3242 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.4495 -1.4979 -1.4101 30 1 1.0870 0.6163 -2.5525 31 1 2.7588 1.0462 -2.1182 32 1 4.5563 -0.3697 -3.0924 33 1 3.4608 0.4435 -7.8647 34 1 1.7414 -2.6620 0.4075 35 1 2.5534 -3.8230 2.4216 36 1 3.2521 -0.0621 4.3077 37 1 2.4315 1.0987 2.2972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930594405.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:09 Heat of formation + Delta-G solvation = -49.454614 kcal Electronic energy + Delta-G solvation = -21185.344314 eV Core-core repulsion = 17737.010976 eV Total energy + Delta-G solvation = -3448.333339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.24413 -40.79189 -38.65833 -37.68393 -36.93929 -34.39150 -33.32418 -32.34886 -31.10230 -29.37852 -27.53538 -26.02440 -24.37215 -23.78044 -22.34004 -21.75891 -20.35874 -19.75362 -19.30325 -18.60962 -17.56513 -16.87800 -16.59498 -16.27667 -16.08010 -15.73552 -15.25771 -15.09435 -14.80723 -14.68093 -14.32069 -14.00908 -13.69338 -13.43606 -12.93039 -12.84259 -12.77424 -12.74653 -12.56236 -12.35488 -12.31639 -12.21218 -12.01826 -11.73554 -11.06280 -10.79749 -10.36360 -10.31379 -10.08392 -9.29159 -8.34574 -6.49041 -1.22072 0.05336 0.31936 0.40466 1.40736 1.47901 1.77285 2.32062 2.44620 3.04386 3.12063 3.45487 3.56030 3.59861 3.94542 4.01104 4.11909 4.21313 4.29149 4.34815 4.41349 4.55696 4.64961 4.72644 4.81161 4.85610 4.97109 5.03005 5.19147 5.22122 5.28449 5.48825 5.53444 5.53847 6.07872 6.09864 6.45625 6.48588 6.65647 7.24337 7.39709 8.79558 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.003414 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.517814 B = 8198.758491 C = 8734.836477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.113 3.887 3 H 0.099 0.901 4 N -0.677 5.677 5 C 0.061 3.939 6 C 0.204 3.796 7 H 0.051 0.949 8 O -0.574 6.574 9 C -0.565 4.565 10 H 0.038 0.962 11 C 0.027 3.973 12 N -0.942 5.942 13 Si 0.939 3.061 14 H -0.285 1.285 15 H -0.303 1.303 16 H -0.203 1.203 17 C -0.004 4.004 18 C -0.098 4.098 19 C -0.057 4.057 20 C -0.071 4.071 21 N 0.033 4.967 22 O -0.191 6.191 23 O -0.179 6.179 24 C -0.053 4.053 25 C -0.109 4.109 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.344 0.656 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.365 0.635 33 H 0.266 0.734 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 -2.906 20.008 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.003 3.997 3 H 0.117 0.883 4 N -0.308 5.308 5 C -0.068 4.068 6 C 0.145 3.855 7 H 0.068 0.932 8 O -0.380 6.380 9 C -0.603 4.603 10 H 0.056 0.944 11 C -0.173 4.173 12 N -0.582 5.582 13 Si 0.763 3.237 14 H -0.212 1.212 15 H -0.230 1.230 16 H -0.125 1.125 17 C -0.005 4.005 18 C -0.117 4.117 19 C -0.076 4.076 20 C -0.154 4.154 21 N 0.546 4.454 22 O -0.402 6.402 23 O -0.393 6.393 24 C -0.072 4.072 25 C -0.128 4.128 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.163 0.837 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.212 0.788 33 H 0.074 0.926 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.182 0.818 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.641 -3.064 19.333 20.117 hybrid contribution -0.308 0.001 -0.565 0.643 sum -4.948 -3.063 18.768 19.649 Atomic orbital electron populations 1.22451 0.94369 1.03254 1.03292 1.20640 0.94000 0.97789 0.87243 0.88327 1.60499 1.57290 1.09679 1.03370 1.22303 0.99284 0.95095 0.90101 1.19542 0.82805 0.92637 0.90474 0.93160 1.86593 1.21027 1.38486 1.91944 1.21880 1.45568 0.97518 0.95319 0.94405 1.25862 0.93796 1.02404 0.95234 1.70085 1.47924 1.38093 1.02060 0.85995 0.77811 0.80113 0.79755 1.21205 1.22998 1.12484 1.20477 0.91479 0.93961 0.94626 1.21154 0.99079 0.94426 0.97050 1.21189 0.93796 1.02247 0.90393 1.21321 1.13128 0.93911 0.87084 1.43978 0.97628 1.01045 1.02722 1.94519 1.60170 0.96480 1.89021 1.94497 1.50232 1.67064 1.27528 1.21228 0.94943 0.90575 1.00414 1.21350 0.98314 1.02309 0.90839 0.91496 0.90306 0.92247 0.83662 0.95000 0.91600 0.78783 0.92565 0.82688 0.82570 0.81770 0.80974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.14 71.98 0.66 -1.91 16 2 C 0.11 1.96 2.79 44.17 0.12 2.09 16 3 H 0.10 1.67 7.66 -2.39 -0.02 1.65 16 4 N -0.68 -16.18 5.57 -495.44 -2.76 -18.94 16 5 C 0.06 1.93 5.08 86.30 0.44 2.37 16 6 C 0.20 8.33 2.52 29.85 0.08 8.41 16 7 H 0.05 2.09 7.57 -2.39 -0.02 2.07 16 8 O -0.57 -23.12 10.01 -148.98 -1.49 -24.61 16 9 C -0.56 -29.65 9.34 25.60 0.24 -29.41 16 10 H 0.04 2.19 7.99 -2.91 -0.02 2.16 16 11 C 0.03 1.47 5.47 84.65 0.46 1.94 16 12 N -0.94 -57.00 13.96 21.44 0.30 -56.70 16 13 Si 0.94 43.49 26.99 68.60 1.85 45.34 16 14 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 15 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 16 H -0.20 -8.92 5.31 99.48 0.53 -8.39 16 17 C 0.00 -0.07 4.96 -19.87 -0.10 -0.17 16 18 C -0.10 -1.65 9.33 22.27 0.21 -1.45 16 19 C -0.06 -1.05 9.56 22.27 0.21 -0.84 16 20 C -0.07 -1.47 6.85 36.37 0.25 -1.22 16 21 N 0.03 0.84 4.45 -46.46 -0.21 0.63 16 22 O -0.19 -5.28 18.45 18.90 0.35 -4.93 16 23 O -0.18 -4.75 18.45 18.89 0.35 -4.40 16 24 C -0.05 -0.85 9.56 22.27 0.21 -0.63 16 25 C -0.11 -1.49 9.67 22.27 0.22 -1.27 16 26 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 27 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.06 1.01 7.45 -2.39 -0.02 1.00 16 29 H 0.34 7.72 7.82 -89.70 -0.70 7.02 16 30 H 0.03 1.01 7.44 -2.39 -0.02 0.99 16 31 H 0.07 2.12 8.06 -2.38 -0.02 2.10 16 32 H 0.37 13.36 9.04 -74.06 -0.67 12.69 16 33 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.16 2.33 7.24 -2.91 -0.02 2.31 16 35 H 0.16 2.62 7.61 -2.91 -0.02 2.59 16 36 H 0.16 2.15 7.61 -2.91 -0.02 2.12 16 37 H 0.17 1.38 8.04 -2.91 -0.02 1.36 16 Total: -1.00 -66.64 319.75 0.95 -65.70 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.44 Total: 20.01 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 3.00 Total: -22.10 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -2.66 Total: -75.01 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -0.79 Total: -33.94 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.85 Total: 45.34 kcal Total: -66.64 0.95 -65.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930594405.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.242 kcal (2) G-P(sol) polarization free energy of solvation -66.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds