Wall clock time and date at job start Tue Mar 31 2020 01:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47000 * 2 1 4 4 N 1.46901 * 109.47111 * 119.99584 * 2 1 3 5 5 C 1.46896 * 111.00245 * 275.00153 * 4 2 1 6 6 C 1.53002 * 109.47246 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.46986 * 60.00111 * 6 5 4 8 8 O 1.42898 * 109.47113 * 300.00070 * 6 5 4 9 9 C 1.50706 * 109.46931 * 179.97438 * 6 5 4 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 6 5 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.46845 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47399 * 299.99813 * 13 11 9 16 16 H 1.48498 * 109.47295 * 60.00420 * 13 11 9 17 17 C 1.50696 * 109.46951 * 239.99738 * 2 1 3 18 18 C 1.38237 * 119.99780 * 279.72500 * 17 2 1 19 19 C 1.38236 * 119.99549 * 179.79065 * 18 17 2 20 20 C 1.38241 * 120.00011 * 0.46233 * 19 18 17 21 21 N 1.48019 * 119.99903 * 179.79064 * 20 19 18 22 22 O 1.21794 * 119.99920 * 179.97438 * 21 20 19 23 23 O 1.21804 * 120.00097 * 359.97438 * 21 20 19 24 24 C 1.38233 * 120.00160 * 359.77003 * 20 19 18 25 25 C 1.38236 * 119.99865 * 0.02562 * 24 20 19 26 26 H 1.09002 * 109.47171 * 60.00009 * 1 2 3 27 27 H 1.08999 * 109.47508 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47385 * 300.00218 * 1 2 3 29 29 H 1.00904 * 110.99709 * 38.95331 * 4 2 1 30 30 H 1.09004 * 109.47535 * 59.99890 * 5 4 2 31 31 H 1.08996 * 109.47194 * 300.00212 * 5 4 2 32 32 H 0.96701 * 113.99881 * 299.99463 * 8 6 5 33 33 H 0.97000 * 119.99706 * 359.97438 * 12 11 9 34 34 H 1.07998 * 120.00069 * 0.02562 * 18 17 2 35 35 H 1.08002 * 119.99889 * 180.25729 * 19 18 17 36 36 H 1.07991 * 120.00167 * 179.97438 * 24 20 19 37 37 H 1.08000 * 120.00266 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5950 -0.5330 3.5745 7 1 3.5903 -0.9271 3.3692 8 8 1.7078 -1.6125 3.8741 9 6 2.6600 0.4060 4.7515 10 1 2.3648 1.4384 4.6356 11 6 3.0963 -0.0530 5.9762 12 7 3.4563 -1.3101 6.1172 13 14 3.1762 1.1107 7.4352 14 1 3.6750 0.3775 8.6264 15 1 4.0976 2.2328 7.1236 16 1 1.8201 1.6470 7.7155 17 6 2.0323 -0.7105 -1.2304 18 6 2.0720 -2.0919 -1.2630 19 6 2.5287 -2.7436 -2.3933 20 6 2.9546 -2.0138 -3.4874 21 7 3.4480 -2.7116 -4.6960 22 8 3.8228 -2.0686 -5.6600 23 8 3.4791 -3.9289 -4.7263 24 6 2.9194 -0.6323 -3.4529 25 6 2.4588 0.0194 -2.3242 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.4495 -1.4978 1.4101 30 1 1.0870 0.6164 2.5526 31 1 2.7588 1.0463 2.1182 32 1 0.8020 -1.3349 4.0677 33 1 3.4144 -1.9144 5.3596 34 1 1.7426 -2.6619 -0.4069 35 1 2.5558 -3.8229 -2.4204 36 1 3.2526 -0.0622 -4.3075 37 1 2.4316 1.0987 -2.2971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932178281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:12 Heat of formation + Delta-G solvation = -41.901961 kcal Electronic energy + Delta-G solvation = -21135.502845 eV Core-core repulsion = 17687.497014 eV Total energy + Delta-G solvation = -3448.005831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = -0.06 seconds Orbital eigenvalues (eV) -42.28663 -39.98944 -37.39071 -36.68040 -35.61748 -32.31953 -32.16254 -31.60375 -29.98565 -27.39603 -26.62762 -24.09372 -23.57901 -22.85030 -21.03120 -20.90887 -19.49682 -18.76423 -17.64188 -17.40181 -16.68361 -15.77787 -15.40033 -14.95998 -14.76755 -14.41415 -14.10342 -13.84847 -13.78788 -13.30675 -13.21582 -12.75510 -12.50023 -12.08920 -11.91028 -11.71314 -11.49878 -11.34423 -11.29632 -11.26825 -11.17601 -10.83646 -10.24743 -10.17732 -9.61482 -9.56393 -9.40741 -8.56302 -8.26787 -8.12944 -6.44299 -4.29018 -0.30077 0.76388 1.21569 1.29051 3.08053 3.35636 3.36787 3.56242 4.04901 4.20821 4.28449 4.41150 4.51095 4.74137 4.76305 4.95248 5.00547 5.09927 5.24998 5.35344 5.41737 5.53486 5.54786 5.68389 5.80355 5.80996 6.01755 6.03879 6.05806 6.08964 6.33972 6.55554 7.12376 7.39911 7.51885 7.57999 7.91591 8.24776 8.76556 8.96210 9.57109 10.95996 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032939 B = 0.003072 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.862311 B = 9111.821738 C = 9373.684973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.109 3.891 3 H 0.092 0.908 4 N -0.680 5.680 5 C 0.044 3.956 6 C 0.215 3.785 7 H 0.058 0.942 8 O -0.582 6.582 9 C -0.653 4.653 10 H 0.048 0.952 11 C 0.036 3.964 12 N -0.889 5.889 13 Si 1.066 2.934 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.288 1.288 17 C -0.004 4.004 18 C -0.096 4.096 19 C -0.054 4.054 20 C -0.056 4.056 21 N 0.032 4.968 22 O -0.169 6.169 23 O -0.166 6.166 24 C -0.054 4.054 25 C -0.118 4.118 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.346 0.654 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.350 0.650 33 H 0.285 0.715 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 2.397 -16.355 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.002 4.002 3 H 0.110 0.890 4 N -0.312 5.312 5 C -0.085 4.085 6 C 0.158 3.842 7 H 0.075 0.925 8 O -0.386 6.386 9 C -0.691 4.691 10 H 0.067 0.933 11 C -0.174 4.174 12 N -0.523 5.523 13 Si 0.894 3.106 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.215 1.215 17 C -0.005 4.005 18 C -0.115 4.115 19 C -0.073 4.073 20 C -0.139 4.139 21 N 0.550 4.450 22 O -0.383 6.383 23 O -0.381 6.381 24 C -0.074 4.074 25 C -0.137 4.137 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.166 0.834 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.194 0.806 33 H 0.097 0.903 34 H 0.166 0.834 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.501 2.528 -14.439 15.334 hybrid contribution -1.625 0.336 -1.703 2.378 sum -6.126 2.864 -16.142 17.501 Atomic orbital electron populations 1.22486 0.95621 1.02740 1.02784 1.20632 0.93081 0.97784 0.88670 0.88973 1.60624 1.56658 1.10313 1.03613 1.22753 0.99149 0.95506 0.91064 1.19596 0.89752 0.85324 0.89550 0.92470 1.86511 1.22457 1.37562 1.92081 1.22389 1.52271 0.97490 0.96987 0.93328 1.25789 0.92478 0.98596 1.00524 1.70641 1.41354 1.04460 1.35881 0.83602 0.76469 0.74725 0.75765 1.20667 1.21409 1.21453 1.20470 0.91464 0.93992 0.94588 1.21071 0.99131 0.94190 0.97125 1.21085 0.93854 1.01827 0.90505 1.21098 1.11939 0.93134 0.87696 1.43663 0.97999 1.01127 1.02211 1.94517 1.49941 1.67209 1.26657 1.94535 1.59134 0.95805 1.88621 1.20976 0.95502 0.91280 0.99601 1.21076 0.99769 1.00987 0.91878 0.92025 0.92018 0.91421 0.83424 0.95810 0.91376 0.80552 0.90325 0.83400 0.83066 0.83165 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.14 37.16 0.34 -1.36 16 2 C 0.11 1.22 2.79 -68.87 -0.19 1.03 16 3 H 0.09 1.02 7.66 -51.93 -0.40 0.62 16 4 N -0.68 -10.01 5.70 -107.95 -0.62 -10.62 16 5 C 0.04 0.79 5.13 -3.83 -0.02 0.77 16 6 C 0.21 5.02 2.70 -27.88 -0.08 4.95 16 7 H 0.06 1.51 8.01 -51.93 -0.42 1.09 16 8 O -0.58 -13.30 11.36 -35.23 -0.40 -13.70 16 9 C -0.65 -17.28 8.76 -34.44 -0.30 -17.58 16 10 H 0.05 1.26 7.74 -52.49 -0.41 0.86 16 11 C 0.04 0.98 5.40 -17.82 -0.10 0.88 16 12 N -0.89 -26.38 13.53 55.43 0.75 -25.63 16 13 Si 1.07 24.13 29.90 -169.99 -5.08 19.04 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 17 C 0.00 -0.04 4.96 -104.62 -0.52 -0.56 16 18 C -0.10 -1.01 9.33 -39.58 -0.37 -1.38 16 19 C -0.05 -0.57 9.56 -39.58 -0.38 -0.95 16 20 C -0.06 -0.65 6.85 -79.95 -0.55 -1.19 16 21 N 0.03 0.43 4.45 33.96 0.15 0.59 16 22 O -0.17 -2.34 18.45 -29.46 -0.54 -2.89 16 23 O -0.17 -2.36 18.45 -29.46 -0.54 -2.90 16 24 C -0.05 -0.53 9.56 -39.58 -0.38 -0.91 16 25 C -0.12 -1.07 9.67 -39.58 -0.38 -1.46 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.07 0.70 7.45 -51.93 -0.39 0.32 16 29 H 0.35 5.02 7.21 -39.29 -0.28 4.74 16 30 H 0.02 0.42 7.44 -51.93 -0.39 0.03 16 31 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 32 H 0.35 7.10 9.04 45.56 0.41 7.51 16 33 H 0.28 8.58 6.47 -40.82 -0.26 8.32 16 34 H 0.15 1.47 7.24 -52.49 -0.38 1.09 16 35 H 0.15 1.44 7.61 -52.49 -0.40 1.04 16 36 H 0.15 1.23 7.61 -52.49 -0.40 0.83 16 37 H 0.15 0.97 8.04 -52.49 -0.42 0.55 16 LS Contribution 322.83 15.07 4.87 4.87 Total: -1.00 -30.50 322.83 -8.13 -38.63 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -3.79 Total: 10.39 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.92 Total: -17.77 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.29 Total: -35.67 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.49 Total: -19.49 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.08 Total: 19.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.50 -8.13 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932178281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.273 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.06 seconds