Wall clock time and date at job start Tue Mar 31 2020 01:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47000 * 2 1 4 4 N 1.46901 * 109.47111 * 119.99584 * 2 1 3 5 5 C 1.46896 * 111.00245 * 275.00153 * 4 2 1 6 6 C 1.53002 * 109.47246 * 179.97438 * 5 4 2 7 7 H 1.09000 * 109.46986 * 60.00111 * 6 5 4 8 8 O 1.42898 * 109.47113 * 300.00070 * 6 5 4 9 9 C 1.50706 * 109.46931 * 179.97438 * 6 5 4 10 10 H 1.07999 * 120.00193 * 0.02562 * 9 6 5 11 11 C 1.37879 * 119.99398 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 6 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.46845 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47399 * 299.99813 * 13 11 9 16 16 H 1.48498 * 109.47295 * 60.00420 * 13 11 9 17 17 C 1.50696 * 109.46951 * 239.99738 * 2 1 3 18 18 C 1.38237 * 119.99780 * 279.72500 * 17 2 1 19 19 C 1.38236 * 119.99549 * 179.79065 * 18 17 2 20 20 C 1.38241 * 120.00011 * 0.46233 * 19 18 17 21 21 N 1.48019 * 119.99903 * 179.79064 * 20 19 18 22 22 O 1.21794 * 119.99920 * 179.97438 * 21 20 19 23 23 O 1.21804 * 120.00097 * 359.97438 * 21 20 19 24 24 C 1.38233 * 120.00160 * 359.77003 * 20 19 18 25 25 C 1.38236 * 119.99865 * 0.02562 * 24 20 19 26 26 H 1.09002 * 109.47171 * 60.00009 * 1 2 3 27 27 H 1.08999 * 109.47508 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47385 * 300.00218 * 1 2 3 29 29 H 1.00904 * 110.99709 * 38.95331 * 4 2 1 30 30 H 1.09004 * 109.47535 * 59.99890 * 5 4 2 31 31 H 1.08996 * 109.47194 * 300.00212 * 5 4 2 32 32 H 0.96701 * 113.99881 * 299.99463 * 8 6 5 33 33 H 0.97000 * 119.99706 * 359.97438 * 12 11 9 34 34 H 1.07998 * 120.00069 * 0.02562 * 18 17 2 35 35 H 1.08002 * 119.99889 * 180.25729 * 19 18 17 36 36 H 1.07991 * 120.00167 * 179.97438 * 24 20 19 37 37 H 1.08000 * 120.00266 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5950 -0.5330 3.5745 7 1 3.5903 -0.9271 3.3692 8 8 1.7078 -1.6125 3.8741 9 6 2.6600 0.4060 4.7515 10 1 2.3648 1.4384 4.6356 11 6 3.0963 -0.0530 5.9762 12 7 3.4563 -1.3101 6.1172 13 14 3.1762 1.1107 7.4352 14 1 3.6750 0.3775 8.6264 15 1 4.0976 2.2328 7.1236 16 1 1.8201 1.6470 7.7155 17 6 2.0323 -0.7105 -1.2304 18 6 2.0720 -2.0919 -1.2630 19 6 2.5287 -2.7436 -2.3933 20 6 2.9546 -2.0138 -3.4874 21 7 3.4480 -2.7116 -4.6960 22 8 3.8228 -2.0686 -5.6600 23 8 3.4791 -3.9289 -4.7263 24 6 2.9194 -0.6323 -3.4529 25 6 2.4588 0.0194 -2.3242 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.4495 -1.4978 1.4101 30 1 1.0870 0.6164 2.5526 31 1 2.7588 1.0463 2.1182 32 1 0.8020 -1.3349 4.0677 33 1 3.4144 -1.9144 5.3596 34 1 1.7426 -2.6619 -0.4069 35 1 2.5558 -3.8229 -2.4204 36 1 3.2526 -0.0622 -4.3075 37 1 2.4316 1.0987 -2.2971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932178281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:11 Heat of formation + Delta-G solvation = -62.173532 kcal Electronic energy + Delta-G solvation = -21136.381887 eV Core-core repulsion = 17687.497014 eV Total energy + Delta-G solvation = -3448.884872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.28249 -40.85107 -38.82056 -37.71801 -37.03456 -34.28265 -33.35866 -32.40436 -31.08872 -28.94334 -27.57083 -25.79300 -24.42564 -23.91993 -22.68502 -21.83904 -20.40221 -19.78392 -19.36940 -18.64773 -17.84746 -16.75798 -16.56957 -16.43244 -15.88593 -15.64320 -15.43874 -15.09715 -14.71549 -14.57584 -14.36158 -14.08333 -13.92724 -13.41349 -12.84105 -12.82230 -12.76322 -12.56726 -12.46931 -12.34713 -12.29435 -12.15225 -12.08137 -11.94705 -11.23215 -10.63239 -10.42922 -10.37160 -10.10530 -9.38703 -8.60698 -6.46218 -1.26174 -0.00410 0.27279 0.35939 1.54132 1.60889 1.80156 2.26229 2.56161 3.07785 3.17992 3.40172 3.51076 3.54255 3.88780 3.95312 4.03748 4.14128 4.23784 4.29335 4.38618 4.42733 4.60493 4.67429 4.75233 4.79380 4.91101 4.98021 5.14605 5.14932 5.23597 5.47223 5.49153 5.79312 6.03319 6.17382 6.40651 6.45482 6.58406 7.18245 7.50759 8.77460 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032939 B = 0.003072 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.862311 B = 9111.821738 C = 9373.684973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 H 0.100 0.900 4 N -0.687 5.687 5 C 0.065 3.935 6 C 0.214 3.786 7 H 0.018 0.982 8 O -0.589 6.589 9 C -0.660 4.660 10 H 0.053 0.947 11 C -0.018 4.018 12 N -0.922 5.922 13 Si 1.113 2.887 14 H -0.289 1.289 15 H -0.271 1.271 16 H -0.268 1.268 17 C -0.007 4.007 18 C -0.102 4.102 19 C -0.057 4.057 20 C -0.070 4.070 21 N 0.033 4.967 22 O -0.174 6.174 23 O -0.193 6.193 24 C -0.051 4.051 25 C -0.108 4.108 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.347 0.653 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.362 0.638 33 H 0.268 0.732 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 4.501 -16.846 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.002 3.998 3 H 0.118 0.882 4 N -0.319 5.319 5 C -0.064 4.064 6 C 0.157 3.843 7 H 0.036 0.964 8 O -0.394 6.394 9 C -0.698 4.698 10 H 0.071 0.929 11 C -0.220 4.220 12 N -0.558 5.558 13 Si 0.935 3.065 14 H -0.215 1.215 15 H -0.196 1.196 16 H -0.193 1.193 17 C -0.008 4.008 18 C -0.121 4.121 19 C -0.076 4.076 20 C -0.154 4.154 21 N 0.547 4.453 22 O -0.389 6.389 23 O -0.403 6.403 24 C -0.069 4.069 25 C -0.127 4.127 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.167 0.833 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.208 0.792 33 H 0.079 0.921 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.186 0.814 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.544 4.605 -14.964 16.609 hybrid contribution -1.332 -0.288 -1.599 2.101 sum -6.876 4.317 -16.563 18.446 Atomic orbital electron populations 1.22423 0.94108 1.03120 1.03420 1.20670 0.94267 0.97746 0.87085 0.88178 1.60492 1.57767 1.10077 1.03609 1.22287 0.99128 0.94908 0.90105 1.19412 0.88681 0.84980 0.91237 0.96372 1.86451 1.23196 1.37455 1.92343 1.22840 1.50843 0.98161 0.97931 0.92861 1.27247 0.91739 0.99073 1.03942 1.70784 1.44234 1.05531 1.35275 0.82992 0.77776 0.73277 0.72420 1.21482 1.19646 1.19256 1.20499 0.91664 0.93914 0.94770 1.21132 0.99330 0.94563 0.97060 1.21171 0.93810 1.02256 0.90399 1.21312 1.13034 0.93946 0.87076 1.43945 0.97653 1.01051 1.02668 1.94491 1.49993 1.67055 1.27373 1.94528 1.60302 0.96442 1.89047 1.21250 0.94764 0.90505 1.00430 1.21365 0.98217 1.02381 0.90728 0.89991 0.91840 0.92119 0.83335 0.94826 0.91642 0.79205 0.92117 0.83248 0.82611 0.81425 0.80690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.14 71.98 0.66 -2.13 16 2 C 0.11 2.21 2.79 44.17 0.12 2.33 16 3 H 0.10 1.86 7.66 -2.39 -0.02 1.84 16 4 N -0.69 -19.22 5.70 -495.46 -2.82 -22.04 16 5 C 0.06 2.26 5.13 86.30 0.44 2.71 16 6 C 0.21 10.06 2.70 29.85 0.08 10.14 16 7 H 0.02 1.00 8.01 -2.39 -0.02 0.98 16 8 O -0.59 -27.06 11.36 -148.98 -1.69 -28.76 16 9 C -0.66 -34.63 8.76 25.60 0.22 -34.41 16 10 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 11 C -0.02 -0.98 5.40 84.66 0.46 -0.52 16 12 N -0.92 -55.69 13.53 21.45 0.29 -55.40 16 13 Si 1.11 47.84 29.90 68.60 2.05 49.89 16 14 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 15 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 16 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 17 C -0.01 -0.14 4.96 -19.87 -0.10 -0.23 16 18 C -0.10 -2.00 9.33 22.27 0.21 -1.79 16 19 C -0.06 -1.18 9.56 22.27 0.21 -0.96 16 20 C -0.07 -1.55 6.85 36.37 0.25 -1.30 16 21 N 0.03 0.87 4.45 -46.46 -0.21 0.67 16 22 O -0.17 -4.70 18.45 18.89 0.35 -4.35 16 23 O -0.19 -5.56 18.45 18.88 0.35 -5.21 16 24 C -0.05 -0.86 9.56 22.27 0.21 -0.65 16 25 C -0.11 -1.61 9.67 22.27 0.22 -1.39 16 26 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 28 H 0.06 1.09 7.45 -2.38 -0.02 1.07 16 29 H 0.35 9.67 7.21 -89.69 -0.65 9.02 16 30 H 0.03 1.11 7.44 -2.39 -0.02 1.09 16 31 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 32 H 0.36 14.52 9.04 -74.06 -0.67 13.85 16 33 H 0.27 16.68 6.47 -92.71 -0.60 16.08 16 34 H 0.15 2.84 7.24 -2.91 -0.02 2.82 16 35 H 0.16 2.95 7.61 -2.91 -0.02 2.93 16 36 H 0.17 2.26 7.61 -2.91 -0.02 2.24 16 37 H 0.18 1.53 8.04 -2.91 -0.02 1.51 16 Total: -1.00 -66.24 322.83 1.26 -64.97 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: -0.04 Total: 28.45 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 2.99 Total: -28.22 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -2.74 Total: -76.78 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.99 Total: -38.32 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.05 Total: 49.89 kcal Total: -66.24 1.26 -64.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932178281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.799 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds