Wall clock time and date at job start Tue Mar 31 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 113.28142 * 2 1 4 4 C 1.53496 * 114.20419 * 226.93407 * 2 1 3 5 5 N 1.47066 * 87.98746 * 220.14772 * 4 2 1 6 6 C 1.34776 * 136.06316 * 207.08799 * 5 4 2 7 7 O 1.21587 * 120.00160 * 179.97438 * 6 5 4 8 8 N 1.34773 * 119.99676 * 359.97438 * 6 5 4 9 9 C 1.46497 * 119.99974 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47312 * 325.00005 * 9 8 6 11 11 C 1.50707 * 109.47241 * 204.99923 * 9 8 6 12 12 H 1.07998 * 119.99546 * 265.30575 * 11 9 8 13 13 C 1.37871 * 119.99926 * 85.57834 * 11 9 8 14 14 N 1.31518 * 119.99761 * 184.75677 * 13 11 9 15 15 Si 1.86794 * 120.00145 * 4.75666 * 13 11 9 16 16 H 1.48501 * 109.47438 * 84.64604 * 15 13 11 17 17 H 1.48500 * 109.47462 * 204.64951 * 15 13 11 18 18 H 1.48509 * 109.47207 * 324.64913 * 15 13 11 19 19 C 1.53005 * 109.47374 * 84.99940 * 9 8 6 20 20 F 1.39895 * 109.47336 * 184.14073 * 19 9 8 21 21 F 1.39900 * 109.46769 * 304.14141 * 19 9 8 22 22 F 1.39898 * 109.47131 * 64.14104 * 19 9 8 23 23 C 1.47074 * 87.88447 * 27.34433 * 5 4 2 24 24 H 1.08993 * 113.46962 * 87.43442 * 23 5 4 25 25 C 1.52994 * 113.46732 * 217.87994 * 23 5 4 26 26 H 1.09000 * 109.47155 * 173.56272 * 1 2 3 27 27 H 1.08997 * 109.47164 * 293.55697 * 1 2 3 28 28 H 1.09004 * 109.47248 * 53.55888 * 1 2 3 29 29 H 1.08992 * 113.46955 * 105.36964 * 4 2 1 30 30 H 1.08997 * 113.47173 * 334.92443 * 4 2 1 31 31 H 0.96996 * 120.00363 * 359.97438 * 8 6 5 32 32 H 0.96999 * 119.99651 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.47472 * 40.49358 * 25 23 5 34 34 H 1.09007 * 109.46973 * 160.49529 * 25 23 5 35 35 H 1.09001 * 109.47556 * 280.48841 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9608 1.0012 0.0000 4 6 2.1593 -0.9560 -1.0228 5 7 3.1628 -1.3016 -0.0048 6 6 4.4370 -1.7408 -0.0079 7 8 5.0143 -1.9390 1.0437 8 7 5.0713 -1.9602 -1.1767 9 6 6.4561 -2.4381 -1.1801 10 1 6.9939 -1.9997 -0.3394 11 6 7.1238 -2.0339 -2.4693 12 1 7.1513 -2.7214 -3.3018 13 6 7.7045 -0.7887 -2.5840 14 7 8.2043 -0.3999 -3.7367 15 14 7.7814 0.3461 -1.1023 16 1 8.9758 0.0131 -0.2851 17 1 7.8733 1.7551 -1.5620 18 1 6.5560 0.1722 -0.2814 19 6 6.4698 -3.9630 -1.0549 20 9 7.7917 -4.4115 -0.9632 21 9 5.7677 -4.3428 0.0940 22 9 5.8624 -4.5288 -2.1810 23 6 2.1619 -0.9634 1.0183 24 1 1.5145 -1.7986 1.2851 25 6 2.7540 -0.2588 2.2405 26 1 -0.3633 -1.0212 -0.1152 27 1 -0.3633 0.4107 0.9420 28 1 -0.3634 0.6104 -0.8267 29 1 2.5790 -0.4479 -1.8909 30 1 1.5114 -1.7894 -1.2940 31 1 4.6106 -1.8024 -2.0156 32 1 8.6132 0.4760 -3.8173 33 1 3.5064 0.4602 1.9164 34 1 1.9620 0.2619 2.7789 35 1 3.2154 -0.9964 2.8971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932900633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:53 Heat of formation + Delta-G solvation = -156.029206 kcal Electronic energy + Delta-G solvation = -23492.545894 eV Core-core repulsion = 19497.734394 eV Total energy + Delta-G solvation = -3994.811500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.02414 -46.52882 -46.52256 -40.37489 -37.95579 -34.65181 -32.56289 -31.50958 -30.27037 -28.81641 -26.10843 -24.94138 -23.14115 -21.42897 -20.56816 -19.27072 -18.17780 -17.49927 -17.13805 -16.68985 -16.40307 -15.68393 -15.25338 -14.64247 -14.25887 -14.08051 -13.56568 -13.43165 -13.29824 -13.04928 -13.02671 -12.94341 -12.71871 -12.66869 -12.56602 -12.55223 -11.84559 -11.69524 -11.60621 -11.43956 -11.38601 -11.10852 -10.63929 -10.18890 -10.13167 -9.79359 -9.49040 -8.96516 -8.53713 -8.11695 -6.52509 -4.67047 2.86386 3.15942 3.22253 3.35032 3.69536 4.00536 4.13361 4.19648 4.36813 4.85346 4.95940 4.98782 5.18498 5.22422 5.24696 5.29670 5.35663 5.43149 5.51059 5.58367 5.66722 5.73243 5.88620 5.99862 6.06297 6.26427 6.36383 6.49034 6.92540 7.28745 7.73834 7.97482 8.53545 8.70163 9.03825 9.26580 10.55549 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.007345 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.523566 B = 3811.451783 C = 4526.412953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 H 0.102 0.898 4 C 0.101 3.899 5 N -0.668 5.668 6 C 0.725 3.275 7 O -0.589 6.589 8 N -0.726 5.726 9 C 0.223 3.777 10 H 0.086 0.914 11 C -0.536 4.536 12 H 0.094 0.906 13 C 0.100 3.900 14 N -0.860 5.860 15 Si 0.870 3.130 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.251 1.251 19 C 0.439 3.561 20 F -0.185 7.185 21 F -0.194 7.194 22 F -0.191 7.191 23 C 0.153 3.847 24 H 0.085 0.915 25 C -0.151 4.151 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.395 0.605 32 H 0.275 0.725 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 1.533 5.361 14.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 H 0.121 0.879 4 C -0.022 4.022 5 N -0.409 5.409 6 C 0.429 3.571 7 O -0.467 6.467 8 N -0.381 5.381 9 C 0.119 3.881 10 H 0.104 0.896 11 C -0.574 4.574 12 H 0.112 0.888 13 C -0.110 4.110 14 N -0.493 5.493 15 Si 0.695 3.305 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.175 1.175 19 C 0.383 3.617 20 F -0.167 7.167 21 F -0.176 7.176 22 F -0.172 7.172 23 C 0.049 3.951 24 H 0.102 0.898 25 C -0.209 4.209 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.230 0.770 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.774 1.399 6.018 14.190 hybrid contribution -0.077 0.350 0.178 0.400 sum -12.851 1.749 6.197 14.374 Atomic orbital electron populations 1.21630 0.93671 1.02182 1.02128 1.23153 0.95780 0.98933 0.96811 0.87940 1.22946 0.89018 0.96656 0.93614 1.48926 1.09680 1.71932 1.10342 1.15769 0.78983 0.77030 0.85324 1.90861 1.65448 1.59243 1.31129 1.46775 1.15119 1.69903 1.06330 1.19868 0.81996 0.83863 1.02356 0.89606 1.20795 1.36340 1.02841 0.97398 0.88781 1.24967 0.92718 0.97217 0.96073 1.69871 1.34969 1.20545 1.23898 0.86907 0.80778 0.79781 0.83082 1.19221 1.20792 1.17511 1.21645 0.72755 0.94767 0.72500 1.93095 1.36581 1.91084 1.95939 1.93141 1.79470 1.93370 1.51597 1.93070 1.83602 1.87639 1.52938 1.22530 0.87084 0.95222 0.90251 0.89766 1.21888 1.00712 1.00955 0.97360 0.92290 0.92125 0.92042 0.90574 0.90305 0.77003 0.91505 0.92139 0.91955 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.75 37.16 0.36 -0.65 16 2 C -0.13 -1.31 4.25 -89.97 -0.38 -1.69 16 3 H 0.10 1.09 8.13 -51.93 -0.42 0.67 16 4 C 0.10 1.23 7.85 -8.50 -0.07 1.17 16 5 N -0.67 -11.21 3.56 -182.98 -0.65 -11.86 16 6 C 0.72 15.57 8.00 -86.92 -0.70 14.88 16 7 O -0.59 -14.53 15.15 5.29 0.08 -14.45 16 8 N -0.73 -15.74 4.94 -59.81 -0.30 -16.03 16 9 C 0.22 5.36 1.45 -69.08 -0.10 5.26 16 10 H 0.09 2.20 5.33 -51.93 -0.28 1.92 16 11 C -0.54 -13.99 8.68 -34.44 -0.30 -14.29 16 12 H 0.09 2.65 7.69 -52.49 -0.40 2.24 16 13 C 0.10 2.66 5.47 -17.82 -0.10 2.56 16 14 N -0.86 -23.81 13.96 55.43 0.77 -23.04 16 15 Si 0.87 20.65 26.91 -169.99 -4.57 16.08 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.25 -6.13 6.84 56.52 0.39 -5.74 16 19 C 0.44 10.20 2.83 37.16 0.11 10.31 16 20 F -0.19 -4.31 17.12 2.25 0.04 -4.27 16 21 F -0.19 -4.52 15.57 2.25 0.04 -4.48 16 22 F -0.19 -4.29 16.65 2.25 0.04 -4.26 16 23 C 0.15 2.01 4.27 -72.25 -0.31 1.70 16 24 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 25 C -0.15 -2.03 9.25 37.15 0.34 -1.69 16 26 H 0.06 0.41 8.03 -51.93 -0.42 -0.01 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.83 8.03 -51.93 -0.42 0.41 16 31 H 0.39 7.85 8.31 -40.82 -0.34 7.51 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 307.50 15.07 4.63 4.63 Total: -1.00 -30.73 307.50 -5.44 -36.17 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.38 Total: 3.96 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: -1.14 Total: 17.55 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.17 Total: -50.93 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 9 Polarization: -13.13 SS G_CDS: 0.11 Total: -13.02 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.57 Total: 16.08 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.73 -5.44 -36.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932900633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.859 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds