Wall clock time and date at job start Tue Mar 31 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 113.28142 * 2 1 4 4 C 1.53496 * 114.20419 * 226.93407 * 2 1 3 5 5 N 1.47066 * 87.98746 * 220.14772 * 4 2 1 6 6 C 1.34776 * 136.06316 * 207.08799 * 5 4 2 7 7 O 1.21587 * 120.00160 * 179.97438 * 6 5 4 8 8 N 1.34773 * 119.99676 * 359.97438 * 6 5 4 9 9 C 1.46497 * 119.99974 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.47312 * 325.00005 * 9 8 6 11 11 C 1.50707 * 109.47241 * 204.99923 * 9 8 6 12 12 H 1.07998 * 119.99546 * 265.30575 * 11 9 8 13 13 C 1.37871 * 119.99926 * 85.57834 * 11 9 8 14 14 N 1.31518 * 119.99761 * 184.75677 * 13 11 9 15 15 Si 1.86794 * 120.00145 * 4.75666 * 13 11 9 16 16 H 1.48501 * 109.47438 * 84.64604 * 15 13 11 17 17 H 1.48500 * 109.47462 * 204.64951 * 15 13 11 18 18 H 1.48509 * 109.47207 * 324.64913 * 15 13 11 19 19 C 1.53005 * 109.47374 * 84.99940 * 9 8 6 20 20 F 1.39895 * 109.47336 * 184.14073 * 19 9 8 21 21 F 1.39900 * 109.46769 * 304.14141 * 19 9 8 22 22 F 1.39898 * 109.47131 * 64.14104 * 19 9 8 23 23 C 1.47074 * 87.88447 * 27.34433 * 5 4 2 24 24 H 1.08993 * 113.46962 * 87.43442 * 23 5 4 25 25 C 1.52994 * 113.46732 * 217.87994 * 23 5 4 26 26 H 1.09000 * 109.47155 * 173.56272 * 1 2 3 27 27 H 1.08997 * 109.47164 * 293.55697 * 1 2 3 28 28 H 1.09004 * 109.47248 * 53.55888 * 1 2 3 29 29 H 1.08992 * 113.46955 * 105.36964 * 4 2 1 30 30 H 1.08997 * 113.47173 * 334.92443 * 4 2 1 31 31 H 0.96996 * 120.00363 * 359.97438 * 8 6 5 32 32 H 0.96999 * 119.99651 * 180.02562 * 14 13 11 33 33 H 1.09002 * 109.47472 * 40.49358 * 25 23 5 34 34 H 1.09007 * 109.46973 * 160.49529 * 25 23 5 35 35 H 1.09001 * 109.47556 * 280.48841 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9608 1.0012 0.0000 4 6 2.1593 -0.9560 -1.0228 5 7 3.1628 -1.3016 -0.0048 6 6 4.4370 -1.7408 -0.0079 7 8 5.0143 -1.9390 1.0437 8 7 5.0713 -1.9602 -1.1767 9 6 6.4561 -2.4381 -1.1801 10 1 6.9939 -1.9997 -0.3394 11 6 7.1238 -2.0339 -2.4693 12 1 7.1513 -2.7214 -3.3018 13 6 7.7045 -0.7887 -2.5840 14 7 8.2043 -0.3999 -3.7367 15 14 7.7814 0.3461 -1.1023 16 1 8.9758 0.0131 -0.2851 17 1 7.8733 1.7551 -1.5620 18 1 6.5560 0.1722 -0.2814 19 6 6.4698 -3.9630 -1.0549 20 9 7.7917 -4.4115 -0.9632 21 9 5.7677 -4.3428 0.0940 22 9 5.8624 -4.5288 -2.1810 23 6 2.1619 -0.9634 1.0183 24 1 1.5145 -1.7986 1.2851 25 6 2.7540 -0.2588 2.2405 26 1 -0.3633 -1.0212 -0.1152 27 1 -0.3633 0.4107 0.9420 28 1 -0.3634 0.6104 -0.8267 29 1 2.5790 -0.4479 -1.8909 30 1 1.5114 -1.7894 -1.2940 31 1 4.6106 -1.8024 -2.0156 32 1 8.6132 0.4760 -3.8173 33 1 3.5064 0.4602 1.9164 34 1 1.9620 0.2619 2.7789 35 1 3.2154 -0.9964 2.8971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932900633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:53 Heat of formation + Delta-G solvation = -176.639289 kcal Electronic energy + Delta-G solvation = -23493.439614 eV Core-core repulsion = 19497.734394 eV Total energy + Delta-G solvation = -3995.705220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.91056 -48.41733 -48.39892 -41.62599 -39.47668 -36.52226 -34.50810 -32.74028 -31.33810 -30.43170 -27.23855 -26.91281 -24.26464 -23.10428 -21.86710 -20.76708 -19.90416 -19.36793 -18.80836 -18.46711 -18.28153 -17.30420 -16.49040 -16.28325 -15.55871 -15.46858 -15.25608 -15.21941 -14.93151 -14.84582 -14.60268 -14.58556 -14.53558 -14.42974 -14.06727 -13.64318 -13.33912 -13.05780 -12.72833 -12.65576 -12.58110 -12.45060 -12.15258 -12.05780 -11.86019 -11.17695 -11.08372 -10.95735 -10.23801 -9.51552 -8.58323 -6.76276 1.20464 1.29017 1.41357 1.50130 1.92387 2.14910 2.27975 2.68590 3.03092 3.27586 3.32842 3.34540 3.62873 3.98200 4.04288 4.24219 4.32521 4.43867 4.48567 4.51162 4.69275 4.82616 4.89847 5.02688 5.08476 5.10887 5.24182 5.36275 5.51144 5.54972 5.84357 6.37905 6.40598 6.96981 7.12508 7.63859 8.53821 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.007345 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.523566 B = 3811.451783 C = 4526.412953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 H 0.100 0.900 4 C 0.095 3.905 5 N -0.678 5.678 6 C 0.718 3.282 7 O -0.629 6.629 8 N -0.725 5.725 9 C 0.232 3.768 10 H 0.071 0.929 11 C -0.538 4.538 12 H 0.068 0.932 13 C 0.068 3.932 14 N -0.895 5.895 15 Si 0.923 3.077 16 H -0.268 1.268 17 H -0.270 1.270 18 H -0.263 1.263 19 C 0.442 3.558 20 F -0.186 7.186 21 F -0.193 7.193 22 F -0.186 7.186 23 C 0.143 3.857 24 H 0.103 0.897 25 C -0.147 4.147 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.404 0.596 32 H 0.281 0.719 33 H 0.035 0.965 34 H 0.099 0.901 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.983 2.388 5.880 17.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.123 4.123 3 H 0.118 0.882 4 C -0.027 4.027 5 N -0.418 5.418 6 C 0.422 3.578 7 O -0.510 6.510 8 N -0.381 5.381 9 C 0.126 3.874 10 H 0.089 0.911 11 C -0.575 4.575 12 H 0.086 0.914 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.747 3.253 16 H -0.193 1.193 17 H -0.194 1.194 18 H -0.187 1.187 19 C 0.386 3.614 20 F -0.168 7.168 21 F -0.174 7.174 22 F -0.167 7.167 23 C 0.040 3.960 24 H 0.121 0.879 25 C -0.205 4.205 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.240 0.760 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.117 0.883 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.228 2.276 6.517 16.719 hybrid contribution 0.562 0.037 0.030 0.564 sum -14.666 2.313 6.548 16.227 Atomic orbital electron populations 1.21615 0.90674 1.03188 1.03411 1.23032 0.97808 0.97633 0.93844 0.88197 1.23328 0.87938 0.98021 0.93405 1.49097 1.08906 1.70033 1.13760 1.15837 0.80542 0.77152 0.84271 1.90821 1.67061 1.60972 1.32155 1.46270 1.14327 1.70287 1.07181 1.19540 0.82988 0.84297 1.00555 0.91111 1.20705 1.37065 1.02471 0.97303 0.91365 1.25459 0.92452 0.98253 0.97756 1.69925 1.36273 1.21428 1.25290 0.86086 0.79970 0.78935 0.80285 1.19300 1.19447 1.18724 1.21513 0.72789 0.94471 0.72654 1.93090 1.36689 1.91069 1.95954 1.93143 1.79426 1.93304 1.51547 1.93076 1.83496 1.87500 1.52673 1.22972 0.86230 0.96652 0.90158 0.87919 1.21856 1.01126 0.99975 0.97512 0.91462 0.90853 0.90768 0.90453 0.87970 0.76015 0.90935 0.94614 0.88259 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.75 71.98 0.70 -0.63 16 2 C -0.10 -1.79 4.25 -10.37 -0.04 -1.83 16 3 H 0.10 1.82 8.13 -2.39 -0.02 1.80 16 4 C 0.10 2.05 7.85 83.18 0.65 2.71 16 5 N -0.68 -21.76 3.56 -851.08 -3.03 -24.79 16 6 C 0.72 30.59 8.00 179.06 1.43 32.02 16 7 O -0.63 -31.26 15.15 -3.99 -0.06 -31.32 16 8 N -0.73 -31.27 4.94 -461.40 -2.28 -33.55 16 9 C 0.23 11.20 1.45 44.25 0.06 11.27 16 10 H 0.07 3.67 5.33 -2.39 -0.01 3.65 16 11 C -0.54 -28.39 8.68 25.60 0.22 -28.17 16 12 H 0.07 3.92 7.69 -2.91 -0.02 3.90 16 13 C 0.07 3.60 5.47 84.65 0.46 4.07 16 14 N -0.89 -49.80 13.96 21.45 0.30 -49.50 16 15 Si 0.92 42.92 26.91 68.60 1.85 44.77 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.26 -12.66 6.84 99.48 0.68 -11.98 16 19 C 0.44 20.54 2.83 71.98 0.20 20.75 16 20 F -0.19 -8.69 17.12 44.97 0.77 -7.92 16 21 F -0.19 -8.93 15.57 44.97 0.70 -8.23 16 22 F -0.19 -8.32 16.65 44.97 0.75 -7.57 16 23 C 0.14 3.39 4.27 41.88 0.18 3.57 16 24 H 0.10 2.10 8.11 -2.39 -0.02 2.09 16 25 C -0.15 -3.74 9.25 71.98 0.67 -3.07 16 26 H 0.07 0.61 8.03 -2.39 -0.02 0.59 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.10 1.77 8.03 -2.39 -0.02 1.76 16 31 H 0.40 15.86 8.31 -92.71 -0.77 15.09 16 32 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -66.75 307.50 3.85 -62.89 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.33 Total: 14.55 kcal Atomic # 6 Polarization: 36.14 SS G_CDS: 4.54 Total: 40.68 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -5.01 Total: -107.84 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.06 Total: -31.32 kcal Atomic # 9 Polarization: -25.95 SS G_CDS: 2.22 Total: -23.73 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.85 Total: 44.77 kcal Total: -66.75 3.85 -62.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932900633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.746 kcal (2) G-P(sol) polarization free energy of solvation -66.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds