Wall clock time and date at job start Tue Mar 31 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 113.27909 * 2 1 4 4 C 1.53489 * 114.20895 * 226.92614 * 2 1 3 5 5 N 1.47065 * 87.98776 * 220.34758 * 4 2 1 6 6 C 1.34778 * 136.05965 * 207.08935 * 5 4 2 7 7 O 1.21584 * 120.00282 * 179.97438 * 6 5 4 8 8 N 1.34780 * 120.00078 * 359.97438 * 6 5 4 9 9 C 1.46491 * 120.00170 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.47166 * 35.00620 * 9 8 6 11 11 C 1.50702 * 109.46957 * 155.00354 * 9 8 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 9 8 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 9 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 9 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.53000 * 109.47268 * 275.00492 * 9 8 6 20 20 F 1.39898 * 109.47151 * 300.00027 * 19 9 8 21 21 F 1.39899 * 109.47223 * 60.00269 * 19 9 8 22 22 F 1.39909 * 109.47130 * 180.02562 * 19 9 8 23 23 C 1.47062 * 87.88412 * 27.34339 * 5 4 2 24 24 H 1.09005 * 113.46562 * 217.87705 * 23 5 4 25 25 C 1.52997 * 113.47202 * 87.44066 * 23 5 4 26 26 H 1.08995 * 109.46794 * 173.56843 * 1 2 3 27 27 H 1.08995 * 109.47166 * 293.56705 * 1 2 3 28 28 H 1.08995 * 109.46543 * 53.56783 * 1 2 3 29 29 H 1.08997 * 113.46831 * 105.56663 * 4 2 1 30 30 H 1.09000 * 113.52278 * 335.13864 * 4 2 1 31 31 H 0.97002 * 119.99721 * 0.02562 * 8 6 5 32 32 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.47480 * 79.50190 * 25 23 5 34 34 H 1.08995 * 109.47463 * 199.50653 * 25 23 5 35 35 H 1.09007 * 109.46487 * 319.50598 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9608 1.0012 0.0000 4 6 2.1595 -0.9561 -1.0226 5 7 3.1599 -1.3053 -0.0028 6 6 4.4331 -1.7473 -0.0037 7 8 5.0077 -1.9482 1.0488 8 7 5.0695 -1.9666 -1.1714 9 6 6.4532 -2.4476 -1.1724 10 1 6.6030 -3.1252 -0.3318 11 6 6.7303 -3.1775 -2.4614 12 1 5.9536 -3.2731 -3.2057 13 6 7.9775 -3.7179 -2.6934 14 7 8.9235 -3.6011 -1.7872 15 14 8.3233 -4.6159 -4.2944 16 1 8.8273 -3.6509 -5.3043 17 1 9.3455 -5.6675 -4.0613 18 1 7.0720 -5.2431 -4.7904 19 6 7.4068 -1.2580 -1.0447 20 9 7.2146 -0.3884 -2.1236 21 9 7.1496 -0.5805 0.1519 22 9 8.7284 -1.7173 -1.0463 23 6 2.1575 -0.9661 1.0184 24 1 2.5786 -0.4662 1.8908 25 6 1.2454 -2.1369 1.3896 26 1 -0.3633 -1.0212 -0.1151 27 1 -0.3633 0.4109 0.9419 28 1 -0.3632 0.6103 -0.8268 29 1 2.5822 -0.4477 -1.8892 30 1 1.5108 -1.7879 -1.2971 31 1 4.6113 -1.8060 -2.0111 32 1 9.8008 -3.9815 -1.9503 33 1 1.7664 -2.7983 2.0818 34 1 0.3400 -1.7566 1.8624 35 1 0.9798 -2.6903 0.4887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932900635.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:55 Heat of formation + Delta-G solvation = -151.685590 kcal Electronic energy + Delta-G solvation = -23428.899953 eV Core-core repulsion = 19434.276806 eV Total energy + Delta-G solvation = -3994.623147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.44381 -48.08058 -47.75065 -41.73363 -39.58664 -36.45912 -34.50984 -32.75929 -30.57277 -30.04049 -27.24562 -26.56874 -25.08146 -23.44197 -21.72739 -20.25308 -19.02656 -18.89754 -18.69316 -18.52027 -17.72717 -17.12736 -16.91218 -16.47422 -15.83168 -15.20714 -15.16564 -14.96280 -14.61733 -14.49254 -14.32696 -14.22846 -14.05098 -13.90267 -13.73388 -13.29708 -13.09829 -12.89969 -12.79160 -12.69561 -12.62588 -12.42703 -12.20864 -11.95548 -11.58943 -11.13615 -11.05603 -10.70684 -10.21910 -9.52245 -8.22467 -6.54267 1.43343 1.47437 1.50317 1.60226 2.08866 2.35304 2.52867 2.92246 2.97937 3.32123 3.74754 3.84109 3.98392 4.06216 4.13581 4.24919 4.33243 4.51024 4.60612 4.68348 4.82898 4.96583 4.99913 5.07371 5.11241 5.26045 5.32597 5.40859 5.53525 5.59836 5.63076 6.35701 6.51419 7.09295 7.16064 7.62507 8.70495 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.005478 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.086411 B = 5109.891661 C = 5543.752161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.102 4.102 3 H 0.101 0.899 4 C 0.098 3.902 5 N -0.673 5.673 6 C 0.720 3.280 7 O -0.635 6.635 8 N -0.717 5.717 9 C 0.271 3.729 10 H 0.043 0.957 11 C -0.561 4.561 12 H 0.091 0.909 13 C 0.014 3.986 14 N -0.875 5.875 15 Si 0.988 3.012 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.256 1.256 19 C 0.413 3.587 20 F -0.203 7.203 21 F -0.220 7.220 22 F -0.149 7.149 23 C 0.137 3.863 24 H 0.064 0.936 25 C -0.147 4.147 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.407 0.593 32 H 0.269 0.731 33 H 0.038 0.962 34 H 0.105 0.895 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.203 5.300 -1.239 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.121 4.121 3 H 0.119 0.881 4 C -0.024 4.024 5 N -0.412 5.412 6 C 0.424 3.576 7 O -0.516 6.516 8 N -0.371 5.371 9 C 0.163 3.837 10 H 0.060 0.940 11 C -0.598 4.598 12 H 0.109 0.891 13 C -0.192 4.192 14 N -0.509 5.509 15 Si 0.811 3.189 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.180 1.180 19 C 0.356 3.644 20 F -0.185 7.185 21 F -0.202 7.202 22 F -0.131 7.131 23 C 0.033 3.967 24 H 0.082 0.918 25 C -0.205 4.205 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.242 0.758 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.124 0.876 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.326 5.042 -0.419 17.092 hybrid contribution 1.058 -0.135 -0.614 1.231 sum -15.268 4.907 -1.032 16.070 Atomic orbital electron populations 1.21680 0.90592 1.03435 1.03392 1.22943 0.97999 0.97323 0.93840 0.88079 1.23385 0.87862 0.97837 0.93333 1.48974 1.08557 1.69653 1.14007 1.15663 0.80723 0.77354 0.83906 1.90859 1.67503 1.60851 1.32428 1.44945 1.13985 1.70944 1.07182 1.19195 0.76191 0.87362 1.00930 0.93975 1.21193 0.99572 1.37333 1.01674 0.89067 1.26052 0.95152 0.96349 1.01600 1.70551 1.04231 1.40512 1.35628 0.85093 0.78535 0.77781 0.77496 1.19816 1.20672 1.18003 1.23365 0.84267 0.85422 0.71338 1.92976 1.95463 1.72930 1.57118 1.93060 1.94395 1.83350 1.49444 1.93379 1.36987 1.86922 1.95763 1.22744 0.85456 0.95365 0.93117 0.91779 1.21987 0.99574 0.96835 1.02126 0.91030 0.90916 0.90693 0.90141 0.87876 0.75755 0.92084 0.94308 0.87628 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.77 71.98 0.63 -0.62 16 2 C -0.10 -1.70 4.69 -10.37 -0.05 -1.75 16 3 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.10 2.01 7.49 83.17 0.62 2.63 16 5 N -0.67 -21.78 3.49 -851.23 -2.97 -24.75 16 6 C 0.72 32.21 8.33 179.05 1.49 33.70 16 7 O -0.63 -34.58 15.69 -3.98 -0.06 -34.64 16 8 N -0.72 -31.92 4.99 -461.42 -2.30 -34.22 16 9 C 0.27 14.44 2.21 44.25 0.10 14.53 16 10 H 0.04 2.60 7.58 -2.38 -0.02 2.58 16 11 C -0.56 -29.28 8.47 25.60 0.22 -29.06 16 12 H 0.09 4.38 7.74 -2.91 -0.02 4.35 16 13 C 0.01 0.72 5.20 84.66 0.44 1.16 16 14 N -0.88 -49.69 9.49 21.45 0.20 -49.49 16 15 Si 0.99 41.05 29.54 68.60 2.03 43.07 16 16 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 17 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 19 C 0.41 22.56 2.81 71.98 0.20 22.76 16 20 F -0.20 -10.40 16.94 44.97 0.76 -9.64 16 21 F -0.22 -12.23 15.67 44.97 0.70 -11.53 16 22 F -0.15 -8.74 12.90 44.97 0.58 -8.16 16 23 C 0.14 3.35 4.89 41.87 0.20 3.55 16 24 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 25 C -0.15 -2.85 8.48 71.98 0.61 -2.24 16 26 H 0.07 0.58 6.80 -2.39 -0.02 0.57 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.10 1.69 7.17 -2.39 -0.02 1.67 16 31 H 0.41 15.44 8.25 -92.71 -0.77 14.67 16 32 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.32 7.47 -2.39 -0.02 1.30 16 35 H 0.07 1.24 6.81 -2.38 -0.02 1.23 16 Total: -1.00 -71.91 300.33 3.77 -68.14 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.36 Total: 16.55 kcal Atomic # 6 Polarization: 40.19 SS G_CDS: 4.47 Total: 44.66 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -5.07 Total: -108.46 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.06 Total: -34.64 kcal Atomic # 9 Polarization: -31.37 SS G_CDS: 2.05 Total: -29.33 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -71.91 3.77 -68.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932900635.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.541 kcal (2) G-P(sol) polarization free energy of solvation -71.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds