Wall clock time and date at job start Tue Mar 31 2020 01:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 112.78051 * 2 1 4 4 C 1.53241 * 113.38680 * 229.29448 * 2 1 3 5 5 C 1.53496 * 83.43335 * 219.29073 * 4 2 1 6 6 H 1.08995 * 113.52350 * 140.68585 * 5 4 2 7 7 C 1.52999 * 113.46550 * 271.11858 * 5 4 2 8 8 N 1.47067 * 113.47140 * 130.78456 * 2 1 3 9 9 C 1.34775 * 136.05267 * 321.93474 * 8 2 1 10 10 O 1.21588 * 119.99778 * 179.62763 * 9 8 2 11 11 N 1.34780 * 120.00531 * 359.62979 * 9 8 2 12 12 C 1.46496 * 120.00160 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47304 * 325.00186 * 12 11 9 14 14 C 1.50707 * 109.46824 * 205.00109 * 12 11 9 15 15 H 1.07997 * 119.99988 * 275.37973 * 14 12 11 16 16 C 1.37876 * 119.99588 * 95.10755 * 14 12 11 17 17 N 1.31515 * 119.99494 * 173.95983 * 16 14 12 18 18 Si 1.86794 * 120.00492 * 353.96046 * 16 14 12 19 19 H 1.48494 * 109.47294 * 93.90094 * 18 16 14 20 20 H 1.48502 * 109.47313 * 213.90300 * 18 16 14 21 21 H 1.48504 * 109.46831 * 333.90257 * 18 16 14 22 22 C 1.52997 * 109.46885 * 85.00261 * 12 11 9 23 23 F 1.39908 * 109.47059 * 174.60584 * 22 12 11 24 24 F 1.39892 * 109.47193 * 294.60752 * 22 12 11 25 25 F 1.39901 * 109.47328 * 54.61103 * 22 12 11 26 26 H 1.08996 * 109.47022 * 308.71953 * 1 2 3 27 27 H 1.08998 * 109.47294 * 68.72325 * 1 2 3 28 28 H 1.09006 * 109.46731 * 188.72211 * 1 2 3 29 29 H 1.08998 * 114.32717 * 105.65360 * 4 2 1 30 30 H 1.09001 * 114.19447 * 332.91942 * 4 2 1 31 31 H 1.09001 * 109.46899 * 177.93676 * 7 5 4 32 32 H 1.08996 * 109.47314 * 297.93718 * 7 5 4 33 33 H 1.08997 * 109.47347 * 57.93883 * 7 5 4 34 34 H 0.97001 * 119.99161 * 0.02562 * 11 9 8 35 35 H 0.97007 * 119.99578 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0050 0.0000 4 6 2.1382 -0.9173 -1.0662 5 6 3.1518 -1.2387 0.0408 6 1 3.4387 -2.2896 0.0761 7 6 4.3566 -0.2959 0.0562 8 7 2.1157 -0.8812 1.0214 9 6 1.8267 -1.2175 2.2941 10 8 2.5311 -2.0109 2.8881 11 7 0.7570 -0.6745 2.9085 12 6 0.4427 -1.0406 4.2917 13 1 0.6955 -2.0880 4.4568 14 6 -1.0285 -0.8331 4.5442 15 1 -1.3962 0.1436 4.8222 16 6 -1.9058 -1.8889 4.4149 17 7 -3.1688 -1.7390 4.7493 18 14 -1.3004 -3.5321 3.7648 19 1 -0.9310 -4.4096 4.9044 20 1 -2.3771 -4.1777 2.9716 21 1 -0.1117 -3.3152 2.9015 22 6 1.2530 -0.1634 5.2481 23 9 0.8635 -0.4269 6.5658 24 9 2.6150 -0.4459 5.0991 25 9 1.0214 1.1846 4.9541 26 1 -0.3633 0.6428 0.8018 27 1 -0.3634 0.3729 -0.9576 28 1 -0.3633 -1.0159 0.1558 29 1 2.5624 -0.3917 -1.9217 30 1 1.5030 -1.7570 -1.3483 31 1 5.0129 -0.5585 0.8859 32 1 4.9027 -0.3887 -0.8825 33 1 4.0126 0.7314 0.1763 34 1 0.1949 -0.0419 2.4344 35 1 -3.7862 -2.4817 4.6579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932906624.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:48 Heat of formation + Delta-G solvation = -154.347493 kcal Electronic energy + Delta-G solvation = -23796.236951 eV Core-core repulsion = 19801.498375 eV Total energy + Delta-G solvation = -3994.738576 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.98614 -46.51176 -46.46432 -40.51319 -37.93163 -34.67649 -32.60706 -31.23318 -30.27248 -28.38916 -26.90902 -24.91479 -22.47177 -22.15212 -20.74143 -19.06327 -17.83768 -17.48279 -17.02218 -16.66258 -16.42797 -15.89134 -15.38053 -14.59289 -14.15607 -13.93260 -13.51850 -13.38639 -13.36306 -13.09671 -12.94581 -12.88135 -12.68503 -12.66075 -12.59439 -12.41661 -11.86033 -11.78747 -11.65752 -11.55239 -11.15580 -11.06555 -10.65892 -10.22399 -10.11230 -9.76166 -9.55433 -8.98553 -8.54745 -8.10474 -6.52473 -4.66817 2.85810 3.13925 3.22463 3.36122 3.70313 4.02115 4.13119 4.25273 4.35818 4.88442 4.91744 5.08517 5.14744 5.18735 5.24339 5.25338 5.34036 5.43138 5.57461 5.61057 5.75247 5.79999 5.95192 5.97736 6.13937 6.22749 6.37623 6.38610 6.94069 7.29773 7.75280 7.98827 8.52791 8.70111 9.04089 9.26810 10.55666 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.008258 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.355217 B = 3389.927508 C = 4183.442406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.126 3.874 3 H 0.088 0.912 4 C -0.148 4.148 5 C 0.145 3.855 6 H 0.082 0.918 7 C -0.155 4.155 8 N -0.663 5.663 9 C 0.723 3.277 10 O -0.591 6.591 11 N -0.726 5.726 12 C 0.221 3.779 13 H 0.088 0.912 14 C -0.535 4.535 15 H 0.093 0.907 16 C 0.100 3.900 17 N -0.859 5.859 18 Si 0.868 3.132 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.250 1.250 22 C 0.437 3.563 23 F -0.182 7.182 24 F -0.195 7.195 25 F -0.194 7.194 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.395 0.605 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.006 3.329 -11.679 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.022 3.978 3 H 0.106 0.894 4 C -0.186 4.186 5 C 0.041 3.959 6 H 0.101 0.899 7 C -0.213 4.213 8 N -0.404 5.404 9 C 0.427 3.573 10 O -0.469 6.469 11 N -0.382 5.382 12 C 0.117 3.883 13 H 0.106 0.894 14 C -0.572 4.572 15 H 0.111 0.889 16 C -0.110 4.110 17 N -0.491 5.491 18 Si 0.692 3.308 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.173 1.173 22 C 0.381 3.619 23 F -0.163 7.163 24 F -0.176 7.176 25 F -0.176 7.176 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.269 2.611 -10.911 13.937 hybrid contribution 0.045 -0.300 -0.262 0.400 sum 8.314 2.311 -11.173 14.117 Atomic orbital electron populations 1.22114 0.94189 1.03465 1.02635 1.22532 0.94897 0.94998 0.85405 0.89429 1.23496 0.98606 1.00426 0.96076 1.22137 0.89567 0.99689 0.84550 0.89941 1.21991 0.97421 0.99563 1.02331 1.49132 1.31463 1.48781 1.11042 1.15833 0.81730 0.81200 0.78529 1.90871 1.52899 1.39153 1.64024 1.46869 1.28227 1.48402 1.14738 1.19915 0.95476 0.95029 0.77920 0.89408 1.20740 0.87097 0.99687 1.49711 0.88947 1.24984 0.94575 0.98890 0.92536 1.69875 1.03573 1.33097 1.42585 0.86928 0.79818 0.83335 0.80691 1.19352 1.20576 1.17350 1.21769 0.78074 0.80021 0.82067 1.93107 1.90931 1.93832 1.38469 1.93143 1.35437 1.93407 1.95654 1.93054 1.94442 1.36738 1.93361 0.91594 0.90981 0.91450 0.89607 0.88855 0.91851 0.91256 0.92124 0.76822 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 8.77 37.16 0.33 -1.70 16 2 C 0.13 1.53 4.24 -72.52 -0.31 1.22 16 3 H 0.09 0.94 7.33 -51.93 -0.38 0.56 16 4 C -0.15 -1.47 7.60 -26.35 -0.20 -1.67 16 5 C 0.15 1.89 4.95 -72.38 -0.36 1.53 16 6 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 7 C -0.15 -1.68 9.79 37.16 0.36 -1.31 16 8 N -0.66 -11.12 3.37 -175.54 -0.59 -11.71 16 9 C 0.72 15.69 8.35 -86.92 -0.73 14.97 16 10 O -0.59 -14.92 15.69 5.29 0.08 -14.84 16 11 N -0.73 -15.81 4.84 -59.81 -0.29 -16.10 16 12 C 0.22 5.35 1.49 -69.08 -0.10 5.25 16 13 H 0.09 2.27 5.10 -51.93 -0.27 2.01 16 14 C -0.53 -13.99 8.52 -34.44 -0.29 -14.28 16 15 H 0.09 2.59 8.01 -52.49 -0.42 2.17 16 16 C 0.10 2.66 5.47 -17.82 -0.10 2.57 16 17 N -0.86 -23.81 13.96 55.43 0.77 -23.04 16 18 Si 0.87 20.63 27.02 -169.99 -4.59 16.04 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.25 -6.12 6.85 56.52 0.39 -5.73 16 22 C 0.44 10.29 2.83 37.16 0.11 10.39 16 23 F -0.18 -4.32 16.88 2.25 0.04 -4.29 16 24 F -0.19 -4.61 15.84 2.25 0.04 -4.58 16 25 F -0.19 -4.38 16.94 2.25 0.04 -4.34 16 26 H 0.07 0.86 6.71 -51.93 -0.35 0.51 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 30 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.64 7.06 -51.93 -0.37 0.28 16 34 H 0.39 7.85 5.89 -40.82 -0.24 7.61 16 35 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 302.94 15.07 4.57 4.57 Total: -1.00 -31.18 302.94 -5.36 -36.54 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.13 Total: 4.79 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: -1.29 Total: 16.97 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.11 Total: -50.85 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.08 Total: -14.84 kcal Atomic # 9 Polarization: -13.32 SS G_CDS: 0.11 Total: -13.21 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.59 Total: 16.04 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.18 -5.36 -36.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932906624.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.810 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds