Wall clock time and date at job start Tue Mar 31 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 112.78051 * 2 1 4 4 C 1.53241 * 113.38680 * 229.29448 * 2 1 3 5 5 C 1.53496 * 83.43335 * 219.29073 * 4 2 1 6 6 H 1.08995 * 113.52350 * 140.68585 * 5 4 2 7 7 C 1.52999 * 113.46550 * 271.11858 * 5 4 2 8 8 N 1.47067 * 113.47140 * 130.78456 * 2 1 3 9 9 C 1.34775 * 136.05267 * 321.93474 * 8 2 1 10 10 O 1.21588 * 119.99778 * 179.62763 * 9 8 2 11 11 N 1.34780 * 120.00531 * 359.62979 * 9 8 2 12 12 C 1.46496 * 120.00160 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47304 * 325.00186 * 12 11 9 14 14 C 1.50707 * 109.46824 * 205.00109 * 12 11 9 15 15 H 1.07997 * 119.99988 * 275.37973 * 14 12 11 16 16 C 1.37876 * 119.99588 * 95.10755 * 14 12 11 17 17 N 1.31515 * 119.99494 * 173.95983 * 16 14 12 18 18 Si 1.86794 * 120.00492 * 353.96046 * 16 14 12 19 19 H 1.48494 * 109.47294 * 93.90094 * 18 16 14 20 20 H 1.48502 * 109.47313 * 213.90300 * 18 16 14 21 21 H 1.48504 * 109.46831 * 333.90257 * 18 16 14 22 22 C 1.52997 * 109.46885 * 85.00261 * 12 11 9 23 23 F 1.39908 * 109.47059 * 174.60584 * 22 12 11 24 24 F 1.39892 * 109.47193 * 294.60752 * 22 12 11 25 25 F 1.39901 * 109.47328 * 54.61103 * 22 12 11 26 26 H 1.08996 * 109.47022 * 308.71953 * 1 2 3 27 27 H 1.08998 * 109.47294 * 68.72325 * 1 2 3 28 28 H 1.09006 * 109.46731 * 188.72211 * 1 2 3 29 29 H 1.08998 * 114.32717 * 105.65360 * 4 2 1 30 30 H 1.09001 * 114.19447 * 332.91942 * 4 2 1 31 31 H 1.09001 * 109.46899 * 177.93676 * 7 5 4 32 32 H 1.08996 * 109.47314 * 297.93718 * 7 5 4 33 33 H 1.08997 * 109.47347 * 57.93883 * 7 5 4 34 34 H 0.97001 * 119.99161 * 0.02562 * 11 9 8 35 35 H 0.97007 * 119.99578 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0050 0.0000 4 6 2.1382 -0.9173 -1.0662 5 6 3.1518 -1.2387 0.0408 6 1 3.4387 -2.2896 0.0761 7 6 4.3566 -0.2959 0.0562 8 7 2.1157 -0.8812 1.0214 9 6 1.8267 -1.2175 2.2941 10 8 2.5311 -2.0109 2.8881 11 7 0.7570 -0.6745 2.9085 12 6 0.4427 -1.0406 4.2917 13 1 0.6955 -2.0880 4.4568 14 6 -1.0285 -0.8331 4.5442 15 1 -1.3962 0.1436 4.8222 16 6 -1.9058 -1.8889 4.4149 17 7 -3.1688 -1.7390 4.7493 18 14 -1.3004 -3.5321 3.7648 19 1 -0.9310 -4.4096 4.9044 20 1 -2.3771 -4.1777 2.9716 21 1 -0.1117 -3.3152 2.9015 22 6 1.2530 -0.1634 5.2481 23 9 0.8635 -0.4269 6.5658 24 9 2.6150 -0.4459 5.0991 25 9 1.0214 1.1846 4.9541 26 1 -0.3633 0.6428 0.8018 27 1 -0.3634 0.3729 -0.9576 28 1 -0.3633 -1.0159 0.1558 29 1 2.5624 -0.3917 -1.9217 30 1 1.5030 -1.7570 -1.3483 31 1 5.0129 -0.5585 0.8859 32 1 4.9027 -0.3887 -0.8825 33 1 4.0126 0.7314 0.1763 34 1 0.1949 -0.0419 2.4344 35 1 -3.7862 -2.4817 4.6579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932906624.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:47 Heat of formation + Delta-G solvation = -175.305015 kcal Electronic energy + Delta-G solvation = -23797.145737 eV Core-core repulsion = 19801.498375 eV Total energy + Delta-G solvation = -3995.647362 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.90393 -48.41473 -48.39036 -41.75001 -39.48643 -36.55854 -34.55486 -32.41173 -31.66556 -29.93111 -27.88796 -26.91884 -23.80647 -23.37271 -22.42969 -20.74623 -19.55479 -19.37341 -18.68485 -18.48135 -18.11877 -17.35635 -16.66095 -16.35055 -15.61948 -15.41938 -15.28950 -15.24835 -14.97365 -14.85638 -14.59973 -14.55177 -14.52451 -14.40023 -13.86908 -13.67816 -13.33172 -13.02299 -12.84819 -12.70377 -12.61775 -12.52798 -12.09337 -12.01237 -11.83944 -11.28073 -11.18158 -10.99849 -10.25557 -9.50836 -8.59089 -6.76840 1.18995 1.28186 1.41826 1.50393 1.91888 2.14306 2.25999 2.65630 2.98171 3.31673 3.35334 3.40893 3.61665 4.02020 4.11071 4.18963 4.23471 4.30299 4.37811 4.56185 4.84321 4.85488 4.91177 4.94441 5.06378 5.10302 5.16459 5.28861 5.47313 5.51055 5.84460 6.38987 6.40754 6.96409 7.11994 7.62919 8.53224 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.008258 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.355217 B = 3389.927508 C = 4183.442406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.120 3.880 3 H 0.112 0.888 4 C -0.120 4.120 5 C 0.131 3.869 6 H 0.068 0.932 7 C -0.147 4.147 8 N -0.674 5.674 9 C 0.715 3.285 10 O -0.636 6.636 11 N -0.724 5.724 12 C 0.228 3.772 13 H 0.072 0.928 14 C -0.536 4.536 15 H 0.068 0.932 16 C 0.067 3.933 17 N -0.893 5.893 18 Si 0.922 3.078 19 H -0.269 1.269 20 H -0.266 1.266 21 H -0.263 1.263 22 C 0.439 3.561 23 F -0.184 7.184 24 F -0.194 7.194 25 F -0.188 7.188 26 H 0.051 0.949 27 H 0.107 0.893 28 H 0.042 0.958 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.404 0.596 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 3.811 -14.355 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 H 0.129 0.871 4 C -0.158 4.158 5 C 0.028 3.972 6 H 0.086 0.914 7 C -0.205 4.205 8 N -0.414 5.414 9 C 0.419 3.581 10 O -0.518 6.518 11 N -0.381 5.381 12 C 0.123 3.877 13 H 0.090 0.910 14 C -0.574 4.574 15 H 0.086 0.914 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.745 3.255 19 H -0.194 1.194 20 H -0.190 1.190 21 H -0.187 1.187 22 C 0.383 3.617 23 F -0.166 7.166 24 F -0.176 7.176 25 F -0.169 7.169 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.062 0.938 29 H 0.149 0.851 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.242 0.758 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.086 3.125 -13.655 16.697 hybrid contribution -0.144 -0.370 0.503 0.641 sum 8.943 2.755 -13.152 16.141 Atomic orbital electron populations 1.22124 0.94332 1.01809 1.04050 1.22953 0.94935 0.96016 0.84312 0.87062 1.23434 0.96619 0.99844 0.95856 1.22579 0.90524 0.99690 0.84411 0.91412 1.21959 0.96221 0.99013 1.03322 1.49378 1.33115 1.49126 1.09742 1.15944 0.81156 0.80917 0.80063 1.90823 1.54109 1.41050 1.65817 1.46394 1.28976 1.48811 1.13915 1.19603 0.94415 0.94432 0.79282 0.90988 1.20650 0.88082 0.98669 1.49993 0.91426 1.25488 0.94589 1.01278 0.92664 1.69928 1.04492 1.34315 1.44020 0.86101 0.79045 0.80369 0.79966 1.19385 1.19020 1.18743 1.21652 0.78020 0.80255 0.81820 1.93100 1.90960 1.93885 1.38628 1.93144 1.35327 1.93453 1.95643 1.93061 1.94408 1.36144 1.93304 0.93004 0.87481 0.93836 0.85137 0.88861 0.94300 0.87587 0.91535 0.75804 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.65 8.77 71.98 0.63 -3.02 16 2 C 0.12 2.55 4.24 41.71 0.18 2.72 16 3 H 0.11 1.92 7.33 -2.39 -0.02 1.90 16 4 C -0.12 -1.86 7.60 30.84 0.23 -1.63 16 5 C 0.13 3.09 4.95 41.80 0.21 3.30 16 6 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 7 C -0.15 -2.75 9.79 71.98 0.70 -2.05 16 8 N -0.67 -21.68 3.37 -827.54 -2.79 -24.47 16 9 C 0.72 31.04 8.35 179.05 1.50 32.54 16 10 O -0.64 -32.58 15.69 -3.99 -0.06 -32.65 16 11 N -0.72 -31.67 4.84 -461.41 -2.23 -33.91 16 12 C 0.23 11.23 1.49 44.25 0.07 11.30 16 13 H 0.07 3.80 5.10 -2.39 -0.01 3.78 16 14 C -0.54 -28.54 8.52 25.60 0.22 -28.33 16 15 H 0.07 3.89 8.01 -2.91 -0.02 3.87 16 16 C 0.07 3.58 5.47 84.65 0.46 4.05 16 17 N -0.89 -49.97 13.96 21.45 0.30 -49.67 16 18 Si 0.92 43.09 27.02 68.60 1.85 44.94 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.26 -12.82 6.85 99.48 0.68 -12.14 16 22 C 0.44 20.82 2.83 71.98 0.20 21.03 16 23 F -0.18 -8.83 16.88 44.97 0.76 -8.07 16 24 F -0.19 -9.24 15.84 44.97 0.71 -8.52 16 25 F -0.19 -8.45 16.94 44.97 0.76 -7.69 16 26 H 0.05 1.28 6.71 -2.39 -0.02 1.27 16 27 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.13 1.00 8.11 -2.39 -0.02 0.98 16 30 H 0.09 1.51 8.11 -2.39 -0.02 1.49 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.17 7.06 -2.39 -0.02 1.16 16 34 H 0.40 16.07 5.89 -92.71 -0.55 15.52 16 35 H 0.28 14.55 8.31 -92.70 -0.77 13.78 16 Total: -1.00 -68.95 302.94 4.26 -64.69 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.56 Total: 15.43 kcal Atomic # 6 Polarization: 35.51 SS G_CDS: 4.40 Total: 39.91 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -4.73 Total: -108.05 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.06 Total: -32.65 kcal Atomic # 9 Polarization: -26.52 SS G_CDS: 2.23 Total: -24.28 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.85 Total: 44.94 kcal Total: -68.95 4.26 -64.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932906624.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.610 kcal (2) G-P(sol) polarization free energy of solvation -68.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds