Wall clock time and date at job start Tue Mar 31 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 112.95745 * 2 1 4 4 C 1.53938 * 113.77368 * 228.32457 * 2 1 3 5 5 C 1.53944 * 86.29087 * 269.19153 * 4 2 1 6 6 H 1.08999 * 113.76777 * 222.09353 * 5 4 2 7 7 C 1.53006 * 113.76789 * 90.80543 * 5 4 2 8 8 N 1.47578 * 113.86968 * 131.77362 * 2 1 3 9 9 C 1.34772 * 134.49441 * 269.67738 * 8 2 1 10 10 O 1.21586 * 120.00365 * 0.02562 * 9 8 2 11 11 N 1.34780 * 119.99876 * 180.02562 * 9 8 2 12 12 C 1.46500 * 119.99849 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47398 * 324.99712 * 12 11 9 14 14 C 1.50694 * 109.46988 * 204.99502 * 12 11 9 15 15 H 1.08007 * 120.00341 * 265.08299 * 14 12 11 16 16 C 1.37878 * 120.00333 * 85.08821 * 14 12 11 17 17 N 1.31510 * 120.00277 * 184.90761 * 16 14 12 18 18 Si 1.86805 * 119.99476 * 4.90126 * 16 14 12 19 19 H 1.48505 * 109.46917 * 94.66363 * 18 16 14 20 20 H 1.48501 * 109.46980 * 214.65874 * 18 16 14 21 21 H 1.48493 * 109.47296 * 334.65820 * 18 16 14 22 22 C 1.53000 * 109.47207 * 84.99730 * 12 11 9 23 23 F 1.39894 * 109.47169 * 64.42804 * 22 12 11 24 24 F 1.39899 * 109.47445 * 184.43483 * 22 12 11 25 25 F 1.39907 * 109.47122 * 304.43200 * 22 12 11 26 26 H 1.09006 * 109.46319 * 182.40567 * 1 2 3 27 27 H 1.08993 * 109.47735 * 302.40874 * 1 2 3 28 28 H 1.09001 * 109.47016 * 62.41275 * 1 2 3 29 29 H 1.09001 * 113.74371 * 23.54022 * 4 2 1 30 30 H 1.09003 * 113.74439 * 154.73763 * 4 2 1 31 31 H 1.08997 * 109.47128 * 34.72600 * 7 5 4 32 32 H 1.08997 * 109.46829 * 154.72513 * 7 5 4 33 33 H 1.08998 * 109.46920 * 274.72441 * 7 5 4 34 34 H 0.97002 * 119.99926 * 359.97438 * 11 9 8 35 35 H 0.97001 * 119.99834 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9552 1.0037 0.0000 4 6 2.1506 -0.9367 -1.0522 5 6 2.1303 -2.0176 0.0437 6 1 3.0348 -2.6249 0.0786 7 6 0.8489 -2.8535 0.0617 8 7 2.1272 -0.8991 1.0065 9 6 2.5144 -0.7561 2.2894 10 8 2.3885 0.3173 2.8465 11 7 3.0412 -1.8030 2.9550 12 6 3.4615 -1.6477 4.3498 13 1 3.8643 -0.6459 4.4986 14 6 4.5224 -2.6685 4.6713 15 1 4.2472 -3.6081 5.1273 16 6 5.8444 -2.4030 4.3835 17 7 6.7579 -3.3297 4.5742 18 14 6.3379 -0.7270 3.7224 19 1 6.7693 0.1413 4.8473 20 1 7.4585 -0.8846 2.7608 21 1 5.1784 -0.1055 3.0338 22 6 2.2580 -1.8554 5.2714 23 9 1.8032 -3.1733 5.1546 24 9 2.6361 -1.6081 6.5954 25 9 1.2339 -0.9748 4.9067 26 1 -0.3632 -1.0269 0.0431 27 1 -0.3634 0.5507 0.8675 28 1 -0.3633 0.4759 -0.9108 29 1 1.4904 -1.1513 -1.8926 30 1 3.1533 -0.6439 -1.3637 31 1 0.4888 -2.9885 -0.9581 32 1 1.0565 -3.8271 0.5056 33 1 0.0886 -2.3404 0.6506 34 1 3.1413 -2.6595 2.5108 35 1 7.6880 -3.1428 4.3721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932906626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:50 Heat of formation + Delta-G solvation = -151.094758 kcal Electronic energy + Delta-G solvation = -23766.216535 eV Core-core repulsion = 19771.619009 eV Total energy + Delta-G solvation = -3994.597526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.01517 -46.51912 -46.51489 -40.42741 -37.93736 -34.64102 -32.51923 -30.68181 -30.33570 -28.62597 -27.42205 -24.93295 -22.17482 -22.02583 -20.71085 -18.93716 -18.02395 -17.47855 -17.41896 -16.74986 -16.42350 -15.72271 -15.33378 -14.61684 -14.08625 -13.95452 -13.55940 -13.39849 -13.19714 -13.00212 -12.96940 -12.88922 -12.71138 -12.66494 -12.62224 -12.51726 -12.19634 -11.79707 -11.53384 -11.33735 -11.25256 -11.10892 -10.62369 -10.11221 -10.05643 -9.79268 -9.47739 -8.95705 -8.53680 -8.10964 -6.51620 -4.65996 2.84270 3.14780 3.23223 3.37381 3.71301 4.01325 4.14415 4.26615 4.36792 4.88326 4.94661 5.12162 5.13007 5.17319 5.21872 5.24642 5.28861 5.43670 5.56482 5.63174 5.68075 5.80815 5.89809 5.98643 6.15485 6.26539 6.33124 6.43939 6.94312 7.31003 7.74576 7.98091 8.54361 8.71608 9.04870 9.28666 10.56407 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.008029 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.771117 B = 3486.483593 C = 4213.877491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.150 3.850 3 H 0.084 0.916 4 C -0.145 4.145 5 C 0.124 3.876 6 H 0.089 0.911 7 C -0.164 4.164 8 N -0.660 5.660 9 C 0.717 3.283 10 O -0.592 6.592 11 N -0.726 5.726 12 C 0.221 3.779 13 H 0.088 0.912 14 C -0.536 4.536 15 H 0.094 0.906 16 C 0.100 3.900 17 N -0.860 5.860 18 Si 0.866 3.134 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.247 1.247 22 C 0.439 3.561 23 F -0.191 7.191 24 F -0.186 7.186 25 F -0.194 7.194 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.074 1.864 -11.309 14.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.046 3.954 3 H 0.102 0.898 4 C -0.182 4.182 5 C 0.020 3.980 6 H 0.107 0.893 7 C -0.222 4.222 8 N -0.401 5.401 9 C 0.421 3.579 10 O -0.471 6.471 11 N -0.381 5.381 12 C 0.117 3.883 13 H 0.106 0.894 14 C -0.574 4.574 15 H 0.112 0.888 16 C -0.109 4.109 17 N -0.493 5.493 18 Si 0.691 3.309 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.170 1.170 22 C 0.383 3.617 23 F -0.173 7.173 24 F -0.167 7.167 25 F -0.176 7.176 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.229 0.771 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.896 2.623 -10.618 14.099 hybrid contribution 0.223 0.279 -0.265 0.445 sum -8.673 2.902 -10.883 14.216 Atomic orbital electron populations 1.22293 0.94486 1.03583 1.02287 1.22354 0.93600 0.95761 0.83704 0.89788 1.23664 1.02050 0.96320 0.96213 1.22568 0.98738 0.90690 0.86052 0.89310 1.22311 0.97209 1.00192 1.02522 1.49531 1.66435 1.14051 1.10040 1.15993 0.77827 0.85113 0.78941 1.90859 1.62612 1.26836 1.66769 1.46755 1.65585 1.12327 1.13404 1.19929 0.88326 1.02229 0.77781 0.89408 1.20804 0.89550 1.03648 1.43388 0.88815 1.24962 0.95966 0.97137 0.92886 1.69873 1.02235 1.33204 1.44027 0.86930 0.79645 0.84203 0.80125 1.19420 1.20667 1.17044 1.21663 0.85891 0.73020 0.81110 1.93067 1.90575 1.37627 1.96006 1.93093 1.91394 1.94068 1.38187 1.93140 1.63389 1.69561 1.91513 0.90760 0.91894 0.91466 0.89995 0.89185 0.91244 0.91771 0.90802 0.77052 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 9.71 37.16 0.36 -1.50 16 2 C 0.15 1.97 5.01 -66.87 -0.33 1.64 16 3 H 0.08 1.17 8.14 -51.92 -0.42 0.74 16 4 C -0.14 -1.46 7.50 -25.81 -0.19 -1.66 16 5 C 0.12 1.52 4.61 -66.86 -0.31 1.21 16 6 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 7 C -0.16 -1.69 8.88 37.16 0.33 -1.36 16 8 N -0.66 -11.03 3.19 -169.38 -0.54 -11.57 16 9 C 0.72 15.50 7.94 -86.92 -0.69 14.81 16 10 O -0.59 -14.92 15.68 5.29 0.08 -14.83 16 11 N -0.73 -15.78 4.87 -59.82 -0.29 -16.07 16 12 C 0.22 5.34 1.38 -69.08 -0.10 5.25 16 13 H 0.09 2.26 5.17 -51.93 -0.27 2.00 16 14 C -0.54 -14.03 8.68 -34.44 -0.30 -14.33 16 15 H 0.09 2.64 7.68 -52.48 -0.40 2.24 16 16 C 0.10 2.66 5.47 -17.82 -0.10 2.57 16 17 N -0.86 -23.87 13.96 55.43 0.77 -23.10 16 18 Si 0.87 20.62 27.18 -169.99 -4.62 16.00 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.25 -6.09 6.24 56.52 0.35 -5.73 16 22 C 0.44 10.23 2.83 37.16 0.11 10.34 16 23 F -0.19 -4.31 16.64 2.25 0.04 -4.27 16 24 F -0.19 -4.34 17.13 2.25 0.04 -4.30 16 25 F -0.19 -4.54 15.56 2.25 0.04 -4.51 16 26 H 0.07 0.78 4.37 -51.93 -0.23 0.55 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.86 5.65 -51.93 -0.29 0.57 16 34 H 0.39 7.87 8.20 -40.82 -0.33 7.53 16 35 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 300.67 15.07 4.53 4.53 Total: -1.00 -31.15 300.67 -5.24 -36.39 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.07 Total: 4.77 kcal Atomic # 6 Polarization: 18.18 SS G_CDS: -1.22 Total: 16.96 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.06 Total: -50.74 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.08 Total: -14.83 kcal Atomic # 9 Polarization: -13.19 SS G_CDS: 0.11 Total: -13.08 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.62 Total: 16.00 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.15 -5.24 -36.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932906626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.704 kcal (2) G-P(sol) polarization free energy of solvation -31.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds