Wall clock time and date at job start Tue Mar 31 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 112.95745 * 2 1 4 4 C 1.53938 * 113.77368 * 228.32457 * 2 1 3 5 5 C 1.53944 * 86.29087 * 269.19153 * 4 2 1 6 6 H 1.08999 * 113.76777 * 222.09353 * 5 4 2 7 7 C 1.53006 * 113.76789 * 90.80543 * 5 4 2 8 8 N 1.47578 * 113.86968 * 131.77362 * 2 1 3 9 9 C 1.34772 * 134.49441 * 269.67738 * 8 2 1 10 10 O 1.21586 * 120.00365 * 0.02562 * 9 8 2 11 11 N 1.34780 * 119.99876 * 180.02562 * 9 8 2 12 12 C 1.46500 * 119.99849 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47398 * 324.99712 * 12 11 9 14 14 C 1.50694 * 109.46988 * 204.99502 * 12 11 9 15 15 H 1.08007 * 120.00341 * 265.08299 * 14 12 11 16 16 C 1.37878 * 120.00333 * 85.08821 * 14 12 11 17 17 N 1.31510 * 120.00277 * 184.90761 * 16 14 12 18 18 Si 1.86805 * 119.99476 * 4.90126 * 16 14 12 19 19 H 1.48505 * 109.46917 * 94.66363 * 18 16 14 20 20 H 1.48501 * 109.46980 * 214.65874 * 18 16 14 21 21 H 1.48493 * 109.47296 * 334.65820 * 18 16 14 22 22 C 1.53000 * 109.47207 * 84.99730 * 12 11 9 23 23 F 1.39894 * 109.47169 * 64.42804 * 22 12 11 24 24 F 1.39899 * 109.47445 * 184.43483 * 22 12 11 25 25 F 1.39907 * 109.47122 * 304.43200 * 22 12 11 26 26 H 1.09006 * 109.46319 * 182.40567 * 1 2 3 27 27 H 1.08993 * 109.47735 * 302.40874 * 1 2 3 28 28 H 1.09001 * 109.47016 * 62.41275 * 1 2 3 29 29 H 1.09001 * 113.74371 * 23.54022 * 4 2 1 30 30 H 1.09003 * 113.74439 * 154.73763 * 4 2 1 31 31 H 1.08997 * 109.47128 * 34.72600 * 7 5 4 32 32 H 1.08997 * 109.46829 * 154.72513 * 7 5 4 33 33 H 1.08998 * 109.46920 * 274.72441 * 7 5 4 34 34 H 0.97002 * 119.99926 * 359.97438 * 11 9 8 35 35 H 0.97001 * 119.99834 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9552 1.0037 0.0000 4 6 2.1506 -0.9367 -1.0522 5 6 2.1303 -2.0176 0.0437 6 1 3.0348 -2.6249 0.0786 7 6 0.8489 -2.8535 0.0617 8 7 2.1272 -0.8991 1.0065 9 6 2.5144 -0.7561 2.2894 10 8 2.3885 0.3173 2.8465 11 7 3.0412 -1.8030 2.9550 12 6 3.4615 -1.6477 4.3498 13 1 3.8643 -0.6459 4.4986 14 6 4.5224 -2.6685 4.6713 15 1 4.2472 -3.6081 5.1273 16 6 5.8444 -2.4030 4.3835 17 7 6.7579 -3.3297 4.5742 18 14 6.3379 -0.7270 3.7224 19 1 6.7693 0.1413 4.8473 20 1 7.4585 -0.8846 2.7608 21 1 5.1784 -0.1055 3.0338 22 6 2.2580 -1.8554 5.2714 23 9 1.8032 -3.1733 5.1546 24 9 2.6361 -1.6081 6.5954 25 9 1.2339 -0.9748 4.9067 26 1 -0.3632 -1.0269 0.0431 27 1 -0.3634 0.5507 0.8675 28 1 -0.3633 0.4759 -0.9108 29 1 1.4904 -1.1513 -1.8926 30 1 3.1533 -0.6439 -1.3637 31 1 0.4888 -2.9885 -0.9581 32 1 1.0565 -3.8271 0.5056 33 1 0.0886 -2.3404 0.6506 34 1 3.1413 -2.6595 2.5108 35 1 7.6880 -3.1428 4.3721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932906626.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:50 Heat of formation + Delta-G solvation = -172.130667 kcal Electronic energy + Delta-G solvation = -23767.128720 eV Core-core repulsion = 19771.619009 eV Total energy + Delta-G solvation = -3995.509712 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.91474 -48.42197 -48.40322 -41.66570 -39.48667 -36.52934 -34.49209 -32.16169 -31.29535 -30.09141 -28.49497 -26.93326 -23.69944 -23.06150 -22.36767 -20.65541 -19.58780 -19.33016 -18.83184 -18.59138 -18.39052 -17.28696 -16.65822 -16.29660 -15.62486 -15.41604 -15.25734 -15.11621 -14.93390 -14.84798 -14.60775 -14.55530 -14.53533 -14.08835 -13.94110 -13.66244 -13.55933 -13.14335 -13.02959 -12.64222 -12.56414 -12.21961 -12.09279 -11.97633 -11.86935 -11.17634 -11.03942 -10.96882 -10.24571 -9.51952 -8.58087 -6.76036 1.20037 1.29401 1.43088 1.50032 1.92852 2.15415 2.28120 2.65549 3.02683 3.28508 3.33138 3.43363 3.60694 3.98475 4.15662 4.20834 4.25491 4.28136 4.45038 4.63143 4.79055 4.91033 4.91949 5.01517 5.04176 5.07498 5.20304 5.40220 5.47916 5.52168 5.84597 6.38738 6.40536 6.97255 7.13029 7.64536 8.54084 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016705 B = 0.008029 C = 0.006643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.771117 B = 3486.483593 C = 4213.877491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 H 0.070 0.930 4 C -0.119 4.119 5 C 0.115 3.885 6 H 0.088 0.912 7 C -0.159 4.159 8 N -0.668 5.668 9 C 0.710 3.290 10 O -0.637 6.637 11 N -0.724 5.724 12 C 0.230 3.770 13 H 0.073 0.927 14 C -0.538 4.538 15 H 0.068 0.932 16 C 0.068 3.932 17 N -0.895 5.895 18 Si 0.922 3.078 19 H -0.268 1.268 20 H -0.268 1.268 21 H -0.262 1.262 22 C 0.441 3.559 23 F -0.186 7.186 24 F -0.187 7.187 25 F -0.193 7.193 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.101 0.899 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.403 0.597 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.886 1.923 -13.897 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.033 3.967 3 H 0.088 0.912 4 C -0.157 4.157 5 C 0.013 3.987 6 H 0.106 0.894 7 C -0.217 4.217 8 N -0.408 5.408 9 C 0.414 3.586 10 O -0.519 6.519 11 N -0.379 5.379 12 C 0.124 3.876 13 H 0.090 0.910 14 C -0.576 4.576 15 H 0.086 0.914 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.746 3.254 19 H -0.193 1.193 20 H -0.193 1.193 21 H -0.186 1.186 22 C 0.385 3.615 23 F -0.168 7.168 24 F -0.168 7.168 25 F -0.175 7.175 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.119 0.881 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.723 2.651 -13.271 16.664 hybrid contribution 0.385 0.240 0.489 0.667 sum -9.339 2.892 -12.782 16.092 Atomic orbital electron populations 1.22265 0.92712 1.04184 1.02766 1.22776 0.95046 0.95437 0.83398 0.91171 1.23585 1.02865 0.93304 0.95928 1.22979 0.99940 0.90667 0.85137 0.89395 1.22288 0.95599 0.99244 1.04534 1.49816 1.65225 1.17120 1.08612 1.16124 0.77906 0.84104 0.80492 1.90813 1.64357 1.28235 1.68475 1.46251 1.66021 1.13029 1.12618 1.19600 0.88253 1.00605 0.79121 0.90973 1.20712 0.90347 1.02983 1.43560 0.91412 1.25458 0.95884 0.99472 0.93093 1.69927 1.02836 1.34689 1.45502 0.86079 0.78944 0.80760 0.79625 1.19267 1.19325 1.18593 1.21536 0.85774 0.73219 0.80933 1.93073 1.90478 1.37225 1.95978 1.93089 1.91416 1.94093 1.38223 1.93142 1.63250 1.69584 1.91514 0.89796 0.94621 0.88064 0.85819 0.88880 0.87651 0.92064 0.92115 0.76085 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.71 71.98 0.70 -2.46 16 2 C 0.14 3.29 5.01 45.09 0.23 3.52 16 3 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 4 C -0.12 -1.94 7.50 31.25 0.23 -1.70 16 5 C 0.12 2.52 4.61 45.09 0.21 2.73 16 6 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 7 C -0.16 -2.75 8.88 71.98 0.64 -2.11 16 8 N -0.67 -21.51 3.19 -808.07 -2.58 -24.09 16 9 C 0.71 30.65 7.94 179.05 1.42 32.07 16 10 O -0.64 -32.51 15.68 -3.99 -0.06 -32.58 16 11 N -0.72 -31.51 4.87 -461.42 -2.25 -33.76 16 12 C 0.23 11.21 1.38 44.24 0.06 11.27 16 13 H 0.07 3.78 5.17 -2.39 -0.01 3.77 16 14 C -0.54 -28.57 8.68 25.60 0.22 -28.35 16 15 H 0.07 3.91 7.68 -2.91 -0.02 3.89 16 16 C 0.07 3.61 5.47 84.66 0.46 4.08 16 17 N -0.89 -49.90 13.96 21.45 0.30 -49.60 16 18 Si 0.92 42.92 27.18 68.60 1.86 44.78 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 H -0.26 -12.78 6.24 99.48 0.62 -12.16 16 22 C 0.44 20.72 2.83 71.98 0.20 20.92 16 23 F -0.19 -8.39 16.64 44.97 0.75 -7.64 16 24 F -0.19 -8.76 17.13 44.97 0.77 -7.99 16 25 F -0.19 -9.08 15.56 44.97 0.70 -8.38 16 26 H 0.08 1.49 4.37 -2.38 -0.01 1.48 16 27 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.12 1.09 7.89 -2.39 -0.02 1.07 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.10 1.09 7.90 -2.39 -0.02 1.07 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.25 5.65 -2.39 -0.01 1.24 16 34 H 0.40 16.01 8.20 -92.71 -0.76 15.25 16 35 H 0.28 14.50 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -68.38 300.67 4.17 -64.21 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.29 Total: 15.09 kcal Atomic # 6 Polarization: 35.58 SS G_CDS: 4.38 Total: 39.96 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -4.52 Total: -107.45 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.06 Total: -32.58 kcal Atomic # 9 Polarization: -26.23 SS G_CDS: 2.22 Total: -24.01 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.86 Total: 44.78 kcal Total: -68.38 4.17 -64.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932906626.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.920 kcal (2) G-P(sol) polarization free energy of solvation -68.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds