Wall clock time and date at job start Tue Mar 31 2020 01:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.91629 * 2 1 4 4 C 1.55160 * 111.00269 * 123.90290 * 2 1 3 5 5 C 1.54328 * 102.94049 * 153.57529 * 4 2 1 6 6 N 1.47024 * 107.27092 * 337.80747 * 5 4 2 7 7 C 1.34773 * 125.64927 * 178.92393 * 6 5 4 8 8 O 1.21580 * 120.00500 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99735 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99916 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46673 * 35.00385 * 10 9 7 12 12 C 1.50703 * 109.46718 * 154.99857 * 10 9 7 13 13 H 1.08000 * 119.99411 * 116.85380 * 12 10 9 14 14 C 1.37875 * 120.00558 * 296.84665 * 12 10 9 15 15 N 1.31513 * 120.00356 * 173.86510 * 14 12 10 16 16 Si 1.86799 * 119.99669 * 353.86919 * 14 12 10 17 17 H 1.48501 * 109.47316 * 85.12826 * 16 14 12 18 18 H 1.48509 * 109.46914 * 205.12488 * 16 14 12 19 19 H 1.48500 * 109.47268 * 325.12149 * 16 14 12 20 20 C 1.52994 * 109.47106 * 275.00136 * 10 9 7 21 21 F 1.39901 * 109.47399 * 65.07333 * 20 10 9 22 22 F 1.39908 * 109.46893 * 185.06878 * 20 10 9 23 23 F 1.39899 * 109.47354 * 305.06683 * 20 10 9 24 24 C 1.47422 * 108.70461 * 358.93723 * 6 5 4 25 25 H 1.09003 * 109.47056 * 296.09401 * 1 2 3 26 26 H 1.08999 * 109.47139 * 56.09511 * 1 2 3 27 27 H 1.09003 * 109.47331 * 176.09933 * 1 2 3 28 28 H 1.09000 * 110.71885 * 271.93589 * 4 2 1 29 29 H 1.08994 * 110.71946 * 35.03564 * 4 2 1 30 30 H 1.09000 * 109.88361 * 97.22777 * 5 4 2 31 31 H 1.09005 * 109.88224 * 218.23303 * 5 4 2 32 32 H 0.97003 * 120.00495 * 0.02562 * 9 7 6 33 33 H 0.96994 * 120.00626 * 180.02562 * 15 14 12 34 34 H 1.08997 * 110.37097 * 265.29464 * 24 6 5 35 35 H 1.09002 * 110.36701 * 142.96431 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0861 -0.8080 1.2022 5 6 3.4674 -1.2742 0.6960 6 7 3.4271 -1.2431 -0.7734 7 6 4.4479 -1.5606 -1.5941 8 8 4.3010 -1.4981 -2.7993 9 7 5.6316 -1.9475 -1.0786 10 6 6.7414 -2.2922 -1.9707 11 1 6.7113 -1.6517 -2.8522 12 6 8.0482 -2.0906 -1.2477 13 1 8.6985 -2.9328 -1.0629 14 6 8.4136 -0.8311 -0.8222 15 7 9.4927 -0.6725 -0.0873 16 14 7.3758 0.6502 -1.2895 17 1 6.2640 0.8023 -0.3168 18 1 8.2202 1.8717 -1.2711 19 1 6.8184 0.4542 -2.6519 20 6 6.6159 -3.7556 -2.3990 21 9 5.4595 -3.9186 -3.1693 22 9 7.7353 -4.1175 -3.1562 23 9 6.5383 -4.5689 -1.2634 24 6 2.0852 -0.8067 -1.2003 25 1 -0.3633 0.4520 0.9229 26 1 -0.3633 0.5732 -0.8529 27 1 -0.3634 -1.0253 -0.0699 28 1 2.1921 -0.1700 2.0796 29 1 1.4450 -1.6614 1.4229 30 1 4.2426 -0.5999 1.0600 31 1 3.6662 -2.2885 1.0423 32 1 5.7487 -1.9978 -0.1170 33 1 9.7496 0.2135 0.2124 34 1 1.4518 -1.6704 -1.4024 35 1 2.1559 -0.1720 -2.0837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912788.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:02 Heat of formation + Delta-G solvation = -190.051848 kcal Electronic energy + Delta-G solvation = -23539.049132 eV Core-core repulsion = 19542.762300 eV Total energy + Delta-G solvation = -3996.286833 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.03684 -46.54023 -46.53133 -39.87727 -37.64202 -34.80081 -32.98126 -32.26547 -29.59792 -29.04026 -26.07935 -24.97778 -23.04883 -21.29503 -20.38680 -19.51545 -18.38389 -17.51403 -17.41789 -16.86514 -16.40255 -16.00431 -15.35841 -14.66729 -14.42509 -13.78498 -13.55108 -13.47179 -13.42220 -13.10462 -12.99443 -12.86686 -12.74413 -12.72017 -12.63608 -12.55139 -12.38053 -11.92111 -11.68714 -11.21368 -11.08523 -10.81927 -10.73911 -10.62283 -10.17417 -9.88317 -9.63726 -8.97708 -8.56134 -8.14455 -6.50821 -4.63542 2.97182 3.14427 3.21338 3.33985 3.62224 3.97116 4.13526 4.28217 4.53144 4.57884 4.73010 4.99473 5.06835 5.17496 5.25386 5.30772 5.31606 5.42251 5.53055 5.59723 5.73744 5.75755 5.84864 5.96151 6.01895 6.19851 6.35078 6.57451 6.92564 7.18183 7.52633 7.92329 8.52929 8.57421 9.03730 9.15263 10.57335 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.007479 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.988549 B = 3742.975839 C = 4643.176782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 H 0.083 0.917 4 C -0.124 4.124 5 C 0.097 3.903 6 N -0.643 5.643 7 C 0.709 3.291 8 O -0.588 6.588 9 N -0.729 5.729 10 C 0.219 3.781 11 H 0.091 0.909 12 C -0.535 4.535 13 H 0.096 0.904 14 C 0.097 3.903 15 N -0.862 5.862 16 Si 0.880 3.120 17 H -0.272 1.272 18 H -0.287 1.287 19 H -0.258 1.258 20 C 0.441 3.559 21 F -0.192 7.192 22 F -0.185 7.185 23 F -0.191 7.191 24 C 0.130 3.870 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.397 0.603 33 H 0.274 0.726 34 H 0.062 0.938 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.091 0.981 3.626 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 H 0.102 0.898 4 C -0.162 4.162 5 C -0.026 4.026 6 N -0.383 5.383 7 C 0.412 3.588 8 O -0.466 6.466 9 N -0.385 5.385 10 C 0.115 3.885 11 H 0.108 0.892 12 C -0.573 4.573 13 H 0.114 0.886 14 C -0.112 4.112 15 N -0.496 5.496 16 Si 0.707 3.293 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.182 1.182 20 C 0.385 3.615 21 F -0.174 7.174 22 F -0.166 7.166 23 F -0.173 7.173 24 C 0.006 3.994 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.962 1.084 2.756 14.272 hybrid contribution -0.358 0.512 0.355 0.718 sum -14.320 1.595 3.111 14.741 Atomic orbital electron populations 1.21674 0.93799 1.02174 1.01958 1.22399 0.96016 0.99559 0.94913 0.89846 1.22666 0.95428 1.00151 0.97918 1.21978 0.98234 1.01413 0.81024 1.47659 1.12168 1.72545 1.05879 1.15956 0.79961 0.78112 0.84803 1.90886 1.82488 1.60816 1.12364 1.46810 1.10305 1.70487 1.10884 1.20135 0.87656 0.86019 0.94685 0.89186 1.20823 1.00197 0.97132 1.39188 0.88638 1.24895 0.94688 0.98796 0.92805 1.69876 1.23829 1.24320 1.31552 0.86758 0.80024 0.81567 0.80978 1.19775 1.21336 1.18219 1.21544 0.72631 0.92946 0.74370 1.93151 1.50955 1.96687 1.76597 1.93104 1.53260 1.93252 1.77022 1.93074 1.96017 1.76390 1.51773 1.22061 0.82378 0.97683 0.97229 0.92245 0.92324 0.92303 0.90200 0.90501 0.91582 0.91482 0.76673 0.91574 0.91931 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.31 37.16 0.35 -0.75 16 2 C -0.11 -1.14 3.64 -88.47 -0.32 -1.46 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.12 -1.22 6.42 -24.89 -0.16 -1.38 16 5 C 0.10 1.30 6.15 -3.06 -0.02 1.29 16 6 N -0.64 -11.03 3.33 -176.23 -0.59 -11.61 16 7 C 0.71 15.25 7.88 -86.92 -0.69 14.57 16 8 O -0.59 -14.46 15.17 5.30 0.08 -14.38 16 9 N -0.73 -15.84 3.17 -59.81 -0.19 -16.03 16 10 C 0.22 5.24 1.41 -69.08 -0.10 5.14 16 11 H 0.09 2.30 6.29 -51.93 -0.33 1.98 16 12 C -0.54 -13.96 8.64 -34.44 -0.30 -14.25 16 13 H 0.10 2.69 7.92 -52.49 -0.42 2.28 16 14 C 0.10 2.57 5.46 -17.82 -0.10 2.47 16 15 N -0.86 -23.81 13.96 55.43 0.77 -23.04 16 16 Si 0.88 20.84 26.14 -169.99 -4.44 16.40 16 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.26 -6.40 6.56 56.52 0.37 -6.02 16 20 C 0.44 10.11 2.79 37.15 0.10 10.21 16 21 F -0.19 -4.43 15.83 2.25 0.04 -4.39 16 22 F -0.18 -4.23 16.84 2.25 0.04 -4.19 16 23 F -0.19 -4.24 16.97 2.25 0.04 -4.20 16 24 C 0.13 1.82 6.38 -2.53 -0.02 1.80 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.45 8.07 -51.93 -0.42 0.03 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.40 8.03 7.58 -40.82 -0.31 7.72 16 33 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.06 0.83 7.98 -51.93 -0.41 0.41 16 35 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -30.29 301.31 -5.38 -35.67 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -4.42 Total: 3.60 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: -1.24 Total: 17.63 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.00 Total: -50.68 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.08 Total: -14.38 kcal Atomic # 9 Polarization: -12.89 SS G_CDS: 0.11 Total: -12.78 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.44 Total: 16.40 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.29 -5.38 -35.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912788.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.385 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds