Wall clock time and date at job start Tue Mar 31 2020 01:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.91629 * 2 1 4 4 C 1.55160 * 111.00269 * 123.90290 * 2 1 3 5 5 C 1.54328 * 102.94049 * 153.57529 * 4 2 1 6 6 N 1.47024 * 107.27092 * 337.80747 * 5 4 2 7 7 C 1.34773 * 125.64927 * 178.92393 * 6 5 4 8 8 O 1.21580 * 120.00500 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99735 * 0.02562 * 7 6 5 10 10 C 1.46505 * 119.99916 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46673 * 35.00385 * 10 9 7 12 12 C 1.50703 * 109.46718 * 154.99857 * 10 9 7 13 13 H 1.08000 * 119.99411 * 116.85380 * 12 10 9 14 14 C 1.37875 * 120.00558 * 296.84665 * 12 10 9 15 15 N 1.31513 * 120.00356 * 173.86510 * 14 12 10 16 16 Si 1.86799 * 119.99669 * 353.86919 * 14 12 10 17 17 H 1.48501 * 109.47316 * 85.12826 * 16 14 12 18 18 H 1.48509 * 109.46914 * 205.12488 * 16 14 12 19 19 H 1.48500 * 109.47268 * 325.12149 * 16 14 12 20 20 C 1.52994 * 109.47106 * 275.00136 * 10 9 7 21 21 F 1.39901 * 109.47399 * 65.07333 * 20 10 9 22 22 F 1.39908 * 109.46893 * 185.06878 * 20 10 9 23 23 F 1.39899 * 109.47354 * 305.06683 * 20 10 9 24 24 C 1.47422 * 108.70461 * 358.93723 * 6 5 4 25 25 H 1.09003 * 109.47056 * 296.09401 * 1 2 3 26 26 H 1.08999 * 109.47139 * 56.09511 * 1 2 3 27 27 H 1.09003 * 109.47331 * 176.09933 * 1 2 3 28 28 H 1.09000 * 110.71885 * 271.93589 * 4 2 1 29 29 H 1.08994 * 110.71946 * 35.03564 * 4 2 1 30 30 H 1.09000 * 109.88361 * 97.22777 * 5 4 2 31 31 H 1.09005 * 109.88224 * 218.23303 * 5 4 2 32 32 H 0.97003 * 120.00495 * 0.02562 * 9 7 6 33 33 H 0.96994 * 120.00626 * 180.02562 * 15 14 12 34 34 H 1.08997 * 110.37097 * 265.29464 * 24 6 5 35 35 H 1.09002 * 110.36701 * 142.96431 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0861 -0.8080 1.2022 5 6 3.4674 -1.2742 0.6960 6 7 3.4271 -1.2431 -0.7734 7 6 4.4479 -1.5606 -1.5941 8 8 4.3010 -1.4981 -2.7993 9 7 5.6316 -1.9475 -1.0786 10 6 6.7414 -2.2922 -1.9707 11 1 6.7113 -1.6517 -2.8522 12 6 8.0482 -2.0906 -1.2477 13 1 8.6985 -2.9328 -1.0629 14 6 8.4136 -0.8311 -0.8222 15 7 9.4927 -0.6725 -0.0873 16 14 7.3758 0.6502 -1.2895 17 1 6.2640 0.8023 -0.3168 18 1 8.2202 1.8717 -1.2711 19 1 6.8184 0.4542 -2.6519 20 6 6.6159 -3.7556 -2.3990 21 9 5.4595 -3.9186 -3.1693 22 9 7.7353 -4.1175 -3.1562 23 9 6.5383 -4.5689 -1.2634 24 6 2.0852 -0.8067 -1.2003 25 1 -0.3633 0.4520 0.9229 26 1 -0.3633 0.5732 -0.8529 27 1 -0.3634 -1.0253 -0.0699 28 1 2.1921 -0.1700 2.0796 29 1 1.4450 -1.6614 1.4229 30 1 4.2426 -0.5999 1.0600 31 1 3.6662 -2.2885 1.0423 32 1 5.7487 -1.9978 -0.1170 33 1 9.7496 0.2135 0.2124 34 1 1.4518 -1.6704 -1.4024 35 1 2.1559 -0.1720 -2.0837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912788.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:01 Heat of formation + Delta-G solvation = -209.289677 kcal Electronic energy + Delta-G solvation = -23539.883347 eV Core-core repulsion = 19542.762300 eV Total energy + Delta-G solvation = -3997.121047 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.90881 -48.41388 -48.39221 -41.34464 -38.95463 -36.67272 -34.58226 -33.81513 -30.83859 -30.54537 -27.15804 -26.94913 -24.23524 -23.09486 -21.29445 -21.09793 -20.17749 -19.35514 -19.04093 -18.62736 -18.37518 -17.30463 -16.97732 -16.37420 -15.85607 -15.37478 -15.29019 -14.90400 -14.86481 -14.79445 -14.69672 -14.59406 -14.52872 -14.42752 -14.02073 -13.74972 -13.56866 -13.32322 -13.04566 -12.68450 -12.54883 -12.12684 -12.01195 -11.91425 -11.60493 -11.55362 -11.41055 -11.01213 -10.31479 -9.56562 -8.56881 -6.73525 1.18919 1.28273 1.40522 1.52887 1.86515 2.12013 2.21709 2.70923 3.04547 3.17494 3.35475 3.49961 3.63565 3.68035 3.93499 4.25133 4.40581 4.44097 4.56781 4.62679 4.73966 4.88101 4.90336 4.94465 5.02743 5.16299 5.28866 5.31101 5.39140 5.48374 5.82868 6.07314 6.39816 6.94164 6.97004 7.48767 8.55398 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.017333 B = 0.007479 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.988549 B = 3742.975839 C = 4643.176782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.080 0.920 4 C -0.112 4.112 5 C 0.085 3.915 6 N -0.643 5.643 7 C 0.703 3.297 8 O -0.625 6.625 9 N -0.727 5.727 10 C 0.228 3.772 11 H 0.074 0.926 12 C -0.539 4.539 13 H 0.068 0.932 14 C 0.068 3.932 15 N -0.896 5.896 16 Si 0.930 3.070 17 H -0.256 1.256 18 H -0.280 1.280 19 H -0.277 1.277 20 C 0.445 3.555 21 F -0.191 7.191 22 F -0.185 7.185 23 F -0.185 7.185 24 C 0.120 3.880 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.406 0.594 33 H 0.281 0.719 34 H 0.071 0.929 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 1.694 5.026 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 H 0.099 0.901 4 C -0.149 4.149 5 C -0.037 4.037 6 N -0.381 5.381 7 C 0.406 3.594 8 O -0.506 6.506 9 N -0.383 5.383 10 C 0.122 3.878 11 H 0.091 0.909 12 C -0.577 4.577 13 H 0.087 0.913 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.755 3.245 17 H -0.180 1.180 18 H -0.205 1.205 19 H -0.203 1.203 20 C 0.389 3.611 21 F -0.173 7.173 22 F -0.167 7.167 23 F -0.167 7.167 24 C -0.002 4.002 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.243 0.757 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.216 1.805 4.214 16.852 hybrid contribution 0.300 0.231 -0.091 0.389 sum -15.916 2.036 4.123 16.567 Atomic orbital electron populations 1.21651 0.91514 1.02817 1.03047 1.22380 0.97677 0.98721 0.93130 0.90127 1.22695 0.93084 1.01036 0.98112 1.22305 1.00685 1.02067 0.78652 1.47766 1.12040 1.70915 1.07380 1.16028 0.80491 0.78171 0.84759 1.90853 1.83208 1.62380 1.14168 1.46349 1.10208 1.70894 1.10886 1.19760 0.87507 0.86438 0.94075 0.90874 1.20732 1.00987 0.96476 1.39471 0.91347 1.25363 0.95374 1.00558 0.92567 1.69930 1.25142 1.25276 1.32765 0.85988 0.79264 0.79360 0.79850 1.18002 1.20544 1.20259 1.21354 0.72643 0.92606 0.74499 1.93153 1.50870 1.96651 1.76583 1.93102 1.53321 1.93218 1.77046 1.93081 1.95992 1.76131 1.51461 1.22361 0.81058 0.98344 0.98462 0.90398 0.92165 0.91774 0.87873 0.88704 0.92099 0.90718 0.75722 0.90958 0.91049 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.31 71.98 0.67 -0.93 16 2 C -0.10 -1.76 3.64 -9.40 -0.03 -1.79 16 3 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 4 C -0.11 -1.76 6.42 31.79 0.20 -1.56 16 5 C 0.09 2.07 6.15 86.73 0.53 2.61 16 6 N -0.64 -21.10 3.33 -829.74 -2.76 -23.86 16 7 C 0.70 29.85 7.88 179.06 1.41 31.27 16 8 O -0.62 -30.88 15.17 -3.97 -0.06 -30.94 16 9 N -0.73 -31.25 3.17 -461.41 -1.46 -32.71 16 10 C 0.23 10.96 1.41 44.24 0.06 11.02 16 11 H 0.07 3.81 6.29 -2.39 -0.02 3.79 16 12 C -0.54 -28.42 8.64 25.60 0.22 -28.20 16 13 H 0.07 3.95 7.92 -2.91 -0.02 3.92 16 14 C 0.07 3.58 5.46 84.65 0.46 4.04 16 15 N -0.90 -49.60 13.96 21.45 0.30 -49.30 16 16 Si 0.93 42.85 26.14 68.60 1.79 44.64 16 17 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -13.65 6.56 99.48 0.65 -12.99 16 20 C 0.44 20.42 2.79 71.98 0.20 20.62 16 21 F -0.19 -8.77 15.83 44.97 0.71 -8.05 16 22 F -0.19 -8.53 16.84 44.97 0.76 -7.77 16 23 F -0.19 -8.14 16.97 44.97 0.76 -7.37 16 24 C 0.12 3.16 6.38 86.86 0.55 3.72 16 25 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.73 8.07 -2.39 -0.02 0.71 16 28 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.21 8.04 -2.39 -0.02 1.19 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.41 16.05 7.58 -92.71 -0.70 15.35 16 33 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 34 H 0.07 1.75 7.98 -2.39 -0.02 1.73 16 35 H 0.06 1.69 8.04 -2.39 -0.02 1.67 16 Total: -1.00 -65.00 301.31 4.69 -60.31 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.36 Total: 14.26 kcal Atomic # 6 Polarization: 36.50 SS G_CDS: 4.28 Total: 40.79 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -3.92 Total: -105.86 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.06 Total: -30.94 kcal Atomic # 9 Polarization: -25.43 SS G_CDS: 2.23 Total: -23.20 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.79 Total: 44.64 kcal Total: -65.00 4.69 -60.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912788.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.978 kcal (2) G-P(sol) polarization free energy of solvation -65.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds