Wall clock time and date at job start Tue Mar 31 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99581 * 2 1 4 4 C 1.54337 * 109.98955 * 238.96893 * 2 1 3 5 5 C 1.55154 * 103.01880 * 218.66279 * 4 2 1 6 6 C 1.54917 * 101.58326 * 35.30615 * 5 4 2 7 7 N 1.47017 * 109.88642 * 121.09695 * 2 1 3 8 8 C 1.34779 * 125.64855 * 298.39854 * 7 2 1 9 9 O 1.21586 * 119.99874 * 359.71053 * 8 7 2 10 10 N 1.34776 * 119.99941 * 179.71122 * 8 7 2 11 11 C 1.46502 * 119.99941 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.46985 * 325.00621 * 11 10 8 13 13 C 1.50699 * 109.47082 * 205.00383 * 11 10 8 14 14 H 1.08001 * 119.99677 * 265.31031 * 13 11 10 15 15 C 1.37867 * 120.00334 * 85.31312 * 13 11 10 16 16 N 1.31511 * 120.00175 * 185.03882 * 15 13 11 17 17 Si 1.86799 * 119.99791 * 5.03614 * 15 13 11 18 18 H 1.48502 * 109.47350 * 84.65221 * 17 15 13 19 19 H 1.48510 * 109.47215 * 204.64795 * 17 15 13 20 20 H 1.48503 * 109.47434 * 324.64970 * 17 15 13 21 21 C 1.53004 * 109.46891 * 85.00155 * 11 10 8 22 22 F 1.39899 * 109.47185 * 184.14178 * 21 11 10 23 23 F 1.39901 * 109.47288 * 304.14609 * 21 11 10 24 24 F 1.39905 * 109.46865 * 64.14306 * 21 11 10 25 25 H 1.09002 * 109.47005 * 300.35503 * 1 2 3 26 26 H 1.08998 * 109.47118 * 60.35335 * 1 2 3 27 27 H 1.08994 * 109.47110 * 180.35648 * 1 2 3 28 28 H 1.08996 * 110.85247 * 100.19328 * 4 2 1 29 29 H 1.08997 * 110.66824 * 337.04106 * 4 2 1 30 30 H 1.08997 * 111.00898 * 277.22860 * 5 4 2 31 31 H 1.09002 * 111.00538 * 153.37875 * 5 4 2 32 32 H 1.09000 * 110.36698 * 204.15500 * 6 5 4 33 33 H 1.08997 * 110.45906 * 81.87097 * 6 5 4 34 34 H 0.97001 * 119.99887 * 0.02562 * 10 8 7 35 35 H 0.97004 * 120.00146 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2863 -1.5182 -0.6917 6 6 2.8100 -1.8825 0.7367 7 7 2.0301 -0.7140 1.1838 8 6 1.8075 -0.3621 2.4657 9 8 1.1459 0.6262 2.7186 10 7 2.3181 -1.1056 3.4671 11 6 2.0766 -0.7228 4.8604 12 1 2.0575 0.3641 4.9404 13 6 3.1782 -1.2712 5.7302 14 1 3.0484 -2.2182 6.2330 15 6 4.3517 -0.5641 5.8843 16 7 5.3504 -1.0870 6.5616 17 14 4.5232 1.1365 5.1307 18 1 3.9505 2.1477 6.0553 19 1 5.9600 1.4336 4.9008 20 1 3.7954 1.1804 3.8370 21 6 0.7327 -1.2917 5.3200 22 9 0.4579 -0.8481 6.6180 23 9 -0.2777 -0.8578 4.4551 24 9 0.7892 -2.6896 5.3070 25 1 -0.3633 0.5194 0.8868 26 1 -0.3633 0.5083 -0.8931 27 1 -0.3633 -1.0276 0.0064 28 1 2.3596 -0.0449 -2.0192 29 1 1.3067 -1.4404 -1.6226 30 1 4.1669 -0.8768 -0.6581 31 1 3.4807 -2.4154 -1.2794 32 1 3.6656 -2.0412 1.3930 33 1 2.1806 -2.7721 0.7131 34 1 2.8462 -1.8939 3.2652 35 1 6.1762 -0.5896 6.6697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932914267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:25 Heat of formation + Delta-G solvation = -190.133081 kcal Electronic energy + Delta-G solvation = -23752.199250 eV Core-core repulsion = 19755.908895 eV Total energy + Delta-G solvation = -3996.290355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.01740 -46.52171 -46.51694 -39.90292 -37.43044 -34.70542 -32.66872 -31.48375 -31.10390 -28.55276 -25.73543 -24.94102 -22.86325 -21.48779 -20.65584 -19.25694 -18.27125 -17.48044 -17.32095 -16.66566 -16.44550 -16.34069 -14.98265 -14.57049 -14.18762 -13.79190 -13.58606 -13.42319 -13.34663 -13.11689 -12.97697 -12.82943 -12.72752 -12.70360 -12.60491 -12.44331 -12.08857 -11.78553 -11.49056 -11.20809 -11.11537 -10.79569 -10.70434 -10.61309 -10.15928 -9.79318 -9.52457 -8.96486 -8.50232 -8.09033 -6.52280 -4.66983 3.00127 3.18274 3.22691 3.35322 3.68954 4.02545 4.13621 4.34914 4.56728 4.66439 4.86968 4.96847 5.20483 5.24149 5.26072 5.35222 5.45832 5.53572 5.61839 5.65738 5.74941 5.83837 5.87846 6.08095 6.21486 6.32953 6.44368 6.69840 6.93793 7.27949 7.57966 7.93304 8.53808 8.66443 9.04072 9.24539 10.55766 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.007978 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.908736 B = 3508.599002 C = 4322.568549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.069 0.931 4 C -0.128 4.128 5 C -0.131 4.131 6 C 0.098 3.902 7 N -0.639 5.639 8 C 0.713 3.287 9 O -0.590 6.590 10 N -0.728 5.728 11 C 0.223 3.777 12 H 0.086 0.914 13 C -0.537 4.537 14 H 0.094 0.906 15 C 0.100 3.900 16 N -0.860 5.860 17 Si 0.869 3.131 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.252 1.252 21 C 0.439 3.561 22 F -0.186 7.186 23 F -0.194 7.194 24 F -0.191 7.191 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.395 0.605 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.730 -1.267 -13.505 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.166 4.166 5 C -0.169 4.169 6 C -0.025 4.025 7 N -0.380 5.380 8 C 0.416 3.584 9 O -0.468 6.468 10 N -0.383 5.383 11 C 0.119 3.881 12 H 0.104 0.896 13 C -0.575 4.575 14 H 0.112 0.888 15 C -0.110 4.110 16 N -0.493 5.493 17 Si 0.694 3.306 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.175 1.175 21 C 0.383 3.617 22 F -0.167 7.167 23 F -0.175 7.175 24 F -0.173 7.173 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.066 -0.502 -13.109 13.734 hybrid contribution 0.261 0.292 -0.328 0.511 sum -3.805 -0.210 -13.437 13.967 Atomic orbital electron populations 1.22141 0.95121 1.02001 1.02668 1.21290 0.94308 0.95949 0.83654 0.91292 1.22721 0.97742 0.99512 0.96601 1.22738 0.98047 1.00738 0.95400 1.22233 0.95465 0.89179 0.95655 1.47789 1.56628 1.29519 1.04020 1.15924 0.79878 0.83355 0.79283 1.90849 1.44982 1.28475 1.82505 1.46838 1.55753 1.30734 1.04994 1.19862 0.89006 0.98526 0.80736 0.89588 1.20796 0.98485 1.09685 1.28495 0.88776 1.24961 0.94790 0.98018 0.93183 1.69868 1.04098 1.37872 1.37466 0.86916 0.77913 0.84053 0.81708 1.19205 1.20802 1.17517 1.21641 0.89259 0.75919 0.74836 1.93095 1.94751 1.89304 1.39569 1.93140 1.64661 1.89528 1.70217 1.93072 1.96809 1.31076 1.96304 0.90810 0.92370 0.92847 0.90351 0.90608 0.90649 0.90056 0.90622 0.91771 0.76915 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.11 37.16 0.34 -1.87 16 2 C 0.15 2.12 3.46 -66.95 -0.23 1.89 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.13 -1.25 6.48 -24.89 -0.16 -1.41 16 5 C -0.13 -1.28 7.09 -24.58 -0.17 -1.45 16 6 C 0.10 1.25 6.57 -2.52 -0.02 1.24 16 7 N -0.64 -10.68 3.06 -168.68 -0.52 -11.20 16 8 C 0.71 15.07 7.57 -86.92 -0.66 14.41 16 9 O -0.59 -14.28 13.99 5.29 0.07 -14.21 16 10 N -0.73 -15.56 4.89 -59.81 -0.29 -15.85 16 11 C 0.22 5.30 1.45 -69.08 -0.10 5.20 16 12 H 0.09 2.19 5.33 -51.93 -0.28 1.91 16 13 C -0.54 -13.93 8.68 -34.44 -0.30 -14.22 16 14 H 0.09 2.63 7.69 -52.49 -0.40 2.23 16 15 C 0.10 2.65 5.47 -17.82 -0.10 2.55 16 16 N -0.86 -23.72 13.96 55.43 0.77 -22.94 16 17 Si 0.87 20.55 26.91 -169.99 -4.58 15.97 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.25 -6.10 6.82 56.52 0.39 -5.71 16 21 C 0.44 10.12 2.83 37.16 0.11 10.22 16 22 F -0.19 -4.29 17.12 2.25 0.04 -4.25 16 23 F -0.19 -4.45 15.57 2.25 0.04 -4.42 16 24 F -0.19 -4.26 16.65 2.25 0.04 -4.22 16 25 H 0.07 1.26 6.89 -51.93 -0.36 0.91 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.66 7.85 -51.93 -0.41 0.26 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.98 7.30 -51.93 -0.38 0.60 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.39 7.71 7.07 -40.82 -0.29 7.42 16 35 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 299.31 15.07 4.51 4.51 Total: -1.00 -30.15 299.31 -5.43 -35.59 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -4.22 Total: 4.47 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: -1.29 Total: 16.56 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.04 Total: -49.99 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.07 Total: -14.21 kcal Atomic # 9 Polarization: -13.01 SS G_CDS: 0.11 Total: -12.90 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.58 Total: 15.97 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.15 -5.43 -35.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.546 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds