Wall clock time and date at job start Tue Mar 31 2020 01:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99581 * 2 1 4 4 C 1.54337 * 109.98955 * 238.96893 * 2 1 3 5 5 C 1.55154 * 103.01880 * 218.66279 * 4 2 1 6 6 C 1.54917 * 101.58326 * 35.30615 * 5 4 2 7 7 N 1.47017 * 109.88642 * 121.09695 * 2 1 3 8 8 C 1.34779 * 125.64855 * 298.39854 * 7 2 1 9 9 O 1.21586 * 119.99874 * 359.71053 * 8 7 2 10 10 N 1.34776 * 119.99941 * 179.71122 * 8 7 2 11 11 C 1.46502 * 119.99941 * 179.97438 * 10 8 7 12 12 H 1.08994 * 109.46985 * 325.00621 * 11 10 8 13 13 C 1.50699 * 109.47082 * 205.00383 * 11 10 8 14 14 H 1.08001 * 119.99677 * 265.31031 * 13 11 10 15 15 C 1.37867 * 120.00334 * 85.31312 * 13 11 10 16 16 N 1.31511 * 120.00175 * 185.03882 * 15 13 11 17 17 Si 1.86799 * 119.99791 * 5.03614 * 15 13 11 18 18 H 1.48502 * 109.47350 * 84.65221 * 17 15 13 19 19 H 1.48510 * 109.47215 * 204.64795 * 17 15 13 20 20 H 1.48503 * 109.47434 * 324.64970 * 17 15 13 21 21 C 1.53004 * 109.46891 * 85.00155 * 11 10 8 22 22 F 1.39899 * 109.47185 * 184.14178 * 21 11 10 23 23 F 1.39901 * 109.47288 * 304.14609 * 21 11 10 24 24 F 1.39905 * 109.46865 * 64.14306 * 21 11 10 25 25 H 1.09002 * 109.47005 * 300.35503 * 1 2 3 26 26 H 1.08998 * 109.47118 * 60.35335 * 1 2 3 27 27 H 1.08994 * 109.47110 * 180.35648 * 1 2 3 28 28 H 1.08996 * 110.85247 * 100.19328 * 4 2 1 29 29 H 1.08997 * 110.66824 * 337.04106 * 4 2 1 30 30 H 1.08997 * 111.00898 * 277.22860 * 5 4 2 31 31 H 1.09002 * 111.00538 * 153.37875 * 5 4 2 32 32 H 1.09000 * 110.36698 * 204.15500 * 6 5 4 33 33 H 1.08997 * 110.45906 * 81.87097 * 6 5 4 34 34 H 0.97001 * 119.99887 * 0.02562 * 10 8 7 35 35 H 0.97004 * 120.00146 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7477 -1.2428 5 6 3.2863 -1.5182 -0.6917 6 6 2.8100 -1.8825 0.7367 7 7 2.0301 -0.7140 1.1838 8 6 1.8075 -0.3621 2.4657 9 8 1.1459 0.6262 2.7186 10 7 2.3181 -1.1056 3.4671 11 6 2.0766 -0.7228 4.8604 12 1 2.0575 0.3641 4.9404 13 6 3.1782 -1.2712 5.7302 14 1 3.0484 -2.2182 6.2330 15 6 4.3517 -0.5641 5.8843 16 7 5.3504 -1.0870 6.5616 17 14 4.5232 1.1365 5.1307 18 1 3.9505 2.1477 6.0553 19 1 5.9600 1.4336 4.9008 20 1 3.7954 1.1804 3.8370 21 6 0.7327 -1.2917 5.3200 22 9 0.4579 -0.8481 6.6180 23 9 -0.2777 -0.8578 4.4551 24 9 0.7892 -2.6896 5.3070 25 1 -0.3633 0.5194 0.8868 26 1 -0.3633 0.5083 -0.8931 27 1 -0.3633 -1.0276 0.0064 28 1 2.3596 -0.0449 -2.0192 29 1 1.3067 -1.4404 -1.6226 30 1 4.1669 -0.8768 -0.6581 31 1 3.4807 -2.4154 -1.2794 32 1 3.6656 -2.0412 1.3930 33 1 2.1806 -2.7721 0.7131 34 1 2.8462 -1.8939 3.2652 35 1 6.1762 -0.5896 6.6697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932914267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:24 Heat of formation + Delta-G solvation = -209.933222 kcal Electronic energy + Delta-G solvation = -23753.057849 eV Core-core repulsion = 19755.908895 eV Total energy + Delta-G solvation = -3997.148954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.89648 -48.40338 -48.38558 -41.32118 -38.78987 -36.54802 -34.56635 -32.89714 -32.13113 -30.27853 -26.92652 -26.75319 -24.25996 -22.95043 -21.89849 -20.88551 -19.93412 -19.34120 -18.92242 -18.49362 -18.36965 -17.60893 -16.68756 -16.17170 -15.71520 -15.36460 -15.26604 -14.98761 -14.85215 -14.80128 -14.58906 -14.53310 -14.51832 -14.37859 -14.01854 -13.72942 -13.55772 -13.22872 -13.00437 -12.57602 -12.53720 -12.08443 -12.04254 -11.85144 -11.71127 -11.58251 -11.22554 -10.98766 -10.22089 -9.48703 -8.57448 -6.75603 1.22128 1.30046 1.42790 1.60003 1.92596 2.15641 2.28296 2.73681 3.06631 3.30153 3.34378 3.59096 3.67768 3.76920 4.04645 4.26626 4.36610 4.40744 4.49736 4.69396 4.72566 4.88000 4.91066 4.98392 5.12527 5.13405 5.25094 5.40535 5.51697 5.53927 5.84601 6.17189 6.41573 6.97791 7.07217 7.61829 8.54646 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.007978 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.908736 B = 3508.599002 C = 4322.568549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.054 0.946 4 C -0.113 4.113 5 C -0.121 4.121 6 C 0.086 3.914 7 N -0.640 5.640 8 C 0.707 3.293 9 O -0.627 6.627 10 N -0.726 5.726 11 C 0.231 3.769 12 H 0.072 0.928 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.068 3.932 16 N -0.895 5.895 17 Si 0.923 3.077 18 H -0.268 1.268 19 H -0.270 1.270 20 H -0.263 1.263 21 C 0.442 3.558 22 F -0.187 7.187 23 F -0.192 7.192 24 F -0.186 7.186 25 H 0.032 0.968 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.404 0.596 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.508 -1.516 -16.117 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.073 0.927 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.036 4.036 7 N -0.378 5.378 8 C 0.409 3.591 9 O -0.508 6.508 10 N -0.382 5.382 11 C 0.126 3.874 12 H 0.089 0.911 13 C -0.576 4.576 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.747 3.253 18 H -0.193 1.193 19 H -0.195 1.195 20 H -0.187 1.187 21 C 0.386 3.614 22 F -0.168 7.168 23 F -0.174 7.174 24 F -0.168 7.168 25 H 0.051 0.949 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.241 0.759 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.825 -0.783 -15.769 16.245 hybrid contribution 0.126 0.320 0.438 0.557 sum -3.699 -0.463 -15.330 15.777 Atomic orbital electron populations 1.22070 0.95080 1.01979 1.02120 1.21633 0.94496 0.95876 0.84426 0.92740 1.22711 0.97889 0.99794 0.94726 1.22753 0.97755 1.02055 0.93299 1.22579 0.95159 0.88264 0.97622 1.47889 1.56212 1.30648 1.03069 1.16003 0.79679 0.82827 0.80601 1.90818 1.46528 1.29963 1.83503 1.46349 1.56320 1.31262 1.04305 1.19540 0.88702 0.97554 0.81626 0.91058 1.20711 0.99177 1.08745 1.29007 0.91347 1.25451 0.94516 1.00432 0.93476 1.69923 1.04815 1.39247 1.38933 0.86095 0.78183 0.80763 0.80286 1.19283 1.19479 1.18687 1.21513 0.89039 0.76111 0.74770 1.93091 1.94742 1.89348 1.39650 1.93145 1.64497 1.89555 1.70174 1.93077 1.96785 1.30622 1.96281 0.94920 0.89365 0.92468 0.87983 0.88818 0.90820 0.86839 0.91195 0.90352 0.75865 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.11 71.98 0.66 -3.35 16 2 C 0.14 3.61 3.46 45.35 0.16 3.76 16 3 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.11 -1.74 6.48 31.79 0.21 -1.53 16 5 C -0.12 -1.87 7.09 31.99 0.23 -1.64 16 6 C 0.09 1.99 6.57 86.86 0.57 2.56 16 7 N -0.64 -20.55 3.06 -805.85 -2.47 -23.02 16 8 C 0.71 29.74 7.57 179.05 1.36 31.10 16 9 O -0.63 -30.74 13.99 -3.99 -0.06 -30.79 16 10 N -0.73 -31.00 4.89 -461.41 -2.26 -33.25 16 11 C 0.23 11.11 1.45 44.25 0.06 11.17 16 12 H 0.07 3.66 5.33 -2.39 -0.01 3.65 16 13 C -0.54 -28.29 8.68 25.60 0.22 -28.07 16 14 H 0.07 3.91 7.69 -2.91 -0.02 3.89 16 15 C 0.07 3.61 5.47 84.65 0.46 4.07 16 16 N -0.89 -49.58 13.96 21.44 0.30 -49.28 16 17 Si 0.92 42.65 26.91 68.60 1.85 44.49 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.26 -12.55 6.82 99.48 0.68 -11.87 16 21 C 0.44 20.42 2.83 71.98 0.20 20.62 16 22 F -0.19 -8.67 17.12 44.97 0.77 -7.90 16 23 F -0.19 -8.85 15.57 44.97 0.70 -8.15 16 24 F -0.19 -8.28 16.65 44.97 0.75 -7.54 16 25 H 0.03 1.11 6.89 -2.39 -0.02 1.09 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 1.17 7.85 -2.39 -0.02 1.15 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.69 7.30 -2.39 -0.02 1.68 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.40 15.67 7.07 -92.71 -0.66 15.01 16 35 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -65.74 299.31 4.15 -61.59 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.44 Total: 15.15 kcal Atomic # 6 Polarization: 34.56 SS G_CDS: 4.12 Total: 38.69 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -4.43 Total: -105.55 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.06 Total: -30.79 kcal Atomic # 9 Polarization: -25.80 SS G_CDS: 2.22 Total: -23.58 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.85 Total: 44.49 kcal Total: -65.74 4.15 -61.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.339 kcal (2) G-P(sol) polarization free energy of solvation -65.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds