Wall clock time and date at job start Tue Mar 31 2020 01:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 115.55493 * 2 1 4 4 C 1.53006 * 117.51468 * 214.29734 * 2 1 3 5 5 C 1.52999 * 60.00089 * 252.52084 * 4 2 1 6 6 H 1.09002 * 117.49803 * 107.49109 * 5 4 2 7 7 C 1.53005 * 117.51737 * 252.51928 * 5 4 2 8 8 N 1.46500 * 109.47087 * 243.71508 * 7 5 4 9 9 C 1.34773 * 119.99852 * 179.97438 * 8 7 5 10 10 O 1.21583 * 120.00183 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99894 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99948 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47618 * 325.00494 * 12 11 9 14 14 C 1.50695 * 109.47594 * 205.00030 * 12 11 9 15 15 H 1.08003 * 119.99425 * 359.97438 * 14 12 11 16 16 C 1.37871 * 120.00423 * 180.02562 * 14 12 11 17 17 N 1.31506 * 120.00313 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99993 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47421 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47085 * 119.99773 * 18 16 14 21 21 H 1.48500 * 109.47475 * 239.99882 * 18 16 14 22 22 C 1.53001 * 109.47172 * 85.00025 * 12 11 9 23 23 F 1.39897 * 109.47244 * 59.99663 * 22 12 11 24 24 F 1.39896 * 109.47375 * 180.02562 * 22 12 11 25 25 F 1.39902 * 109.47239 * 299.99856 * 22 12 11 26 26 H 1.09005 * 109.46722 * 274.32985 * 1 2 3 27 27 H 1.08994 * 109.46708 * 34.32568 * 1 2 3 28 28 H 1.08999 * 109.46998 * 154.33136 * 1 2 3 29 29 H 1.09003 * 117.49619 * 145.02781 * 4 2 1 30 30 H 1.08995 * 117.50015 * 0.02562 * 4 2 1 31 31 H 1.08998 * 109.46915 * 3.72051 * 7 5 4 32 32 H 1.09001 * 109.46560 * 123.71648 * 7 5 4 33 33 H 0.96994 * 119.99627 * 0.02562 * 8 7 5 34 34 H 0.96994 * 119.99586 * 0.02562 * 11 9 8 35 35 H 0.97006 * 120.00700 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2369 -1.1211 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8584 1.2685 7 6 3.5485 -0.7753 1.4726 8 7 4.0090 -1.9345 2.2409 9 6 5.1530 -1.8618 2.9497 10 8 5.8026 -0.8341 2.9519 11 7 5.5770 -2.9284 3.6562 12 6 6.8202 -2.8492 4.4271 13 1 7.5380 -2.2241 3.8960 14 6 7.3918 -4.2325 4.6023 15 1 6.8799 -5.0855 4.1817 16 6 8.5676 -4.4094 5.3002 17 7 9.1901 -3.3710 5.8136 18 14 9.2756 -6.1242 5.5178 19 1 8.3913 -7.1133 4.8508 20 1 10.6291 -6.1818 4.9095 21 1 9.3698 -6.4409 6.9656 22 6 6.5309 -2.2394 5.8002 23 9 5.6096 -3.0416 6.4820 24 9 7.7181 -2.1632 6.5362 25 9 6.0003 -0.9551 5.6377 26 1 -0.3633 0.0776 1.0248 27 1 -0.3632 0.8487 -0.5795 28 1 -0.3633 -0.9262 -0.4451 29 1 3.1721 -0.8751 -1.2677 30 1 1.6119 -1.8585 -1.2682 31 1 4.3015 -0.5083 0.7311 32 1 3.3874 0.0664 2.1462 33 1 3.4910 -2.7545 2.2389 34 1 5.0589 -3.7484 3.6542 35 1 10.0176 -3.4953 6.3043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932923905.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:36 Heat of formation + Delta-G solvation = -150.428719 kcal Electronic energy + Delta-G solvation = -22620.672972 eV Core-core repulsion = 18626.104328 eV Total energy + Delta-G solvation = -3994.568645 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.28336 -45.93493 -45.55431 -39.42184 -38.07364 -34.77252 -33.83124 -32.49260 -29.42998 -28.19328 -25.87795 -24.49845 -21.76932 -21.19031 -20.77665 -19.98162 -18.20835 -16.90162 -16.75881 -16.54686 -16.21968 -15.47862 -14.92479 -14.73455 -14.68680 -14.23463 -13.53085 -13.37880 -13.19751 -12.89359 -12.82149 -12.45685 -12.38952 -12.33446 -12.23451 -11.92621 -11.76673 -11.60975 -11.42731 -11.14857 -10.84565 -10.76674 -10.37669 -10.23674 -10.10619 -9.60940 -9.47506 -8.74282 -8.67789 -8.11211 -6.21063 -4.44737 3.14721 3.19310 3.26978 3.30775 3.59391 3.84536 4.20958 4.44779 4.61739 4.65077 4.70312 4.93858 4.96496 5.06909 5.19568 5.42604 5.53893 5.61215 5.73744 5.78639 5.87372 5.89599 5.93997 6.03445 6.14498 6.27456 6.85119 6.89081 7.25701 7.41406 7.65287 7.73268 8.52632 8.70848 9.18271 9.29704 10.70537 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.029234 B = 0.004198 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.569136 B = 6667.836592 C = 7155.812872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.148 4.148 3 H 0.107 0.893 4 C -0.173 4.173 5 C -0.163 4.163 6 H 0.109 0.891 7 C 0.172 3.828 8 N -0.751 5.751 9 C 0.698 3.302 10 O -0.586 6.586 11 N -0.727 5.727 12 C 0.262 3.738 13 H 0.085 0.915 14 C -0.551 4.551 15 H 0.077 0.923 16 C 0.064 3.936 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.415 3.585 23 F -0.210 7.210 24 F -0.138 7.138 25 F -0.217 7.217 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.393 0.607 34 H 0.394 0.606 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.080 1.548 -8.726 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.166 4.166 3 H 0.125 0.875 4 C -0.210 4.210 5 C -0.181 4.181 6 H 0.127 0.873 7 C 0.048 3.952 8 N -0.409 5.409 9 C 0.398 3.602 10 O -0.463 6.463 11 N -0.379 5.379 12 C 0.155 3.845 13 H 0.103 0.897 14 C -0.588 4.588 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.359 3.641 23 F -0.192 7.192 24 F -0.119 7.119 25 F -0.198 7.198 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.265 2.606 -8.570 15.188 hybrid contribution -0.182 -1.497 0.499 1.588 sum -12.447 1.109 -8.071 14.876 Atomic orbital electron populations 1.21367 0.92750 1.01871 1.01972 1.22381 0.95248 0.94800 1.04197 0.87526 1.23254 1.02711 1.01236 0.93788 1.22588 0.98735 1.02608 0.94172 0.87311 1.20609 0.92474 0.88102 0.94051 1.45058 1.25691 1.16622 1.53485 1.16070 0.80919 0.84375 0.78873 1.90913 1.57258 1.29928 1.68192 1.45253 1.27504 1.14112 1.51064 1.19597 0.82023 0.99577 0.83259 0.89740 1.20919 1.08562 0.90672 1.38643 0.90462 1.25082 0.96633 0.98403 0.94332 1.70418 1.15926 1.29091 1.31840 0.86159 0.78906 0.82638 0.78094 1.19445 1.20583 1.20592 1.23183 0.74241 0.74521 0.92151 1.92979 1.68682 1.74500 1.83084 1.93398 1.43548 1.95617 1.79313 1.93072 1.87610 1.43178 1.95987 0.92092 0.92125 0.92591 0.88523 0.88784 0.91747 0.91514 0.77416 0.77279 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.19 37.16 0.38 -0.50 16 2 C -0.15 -1.27 6.13 -90.61 -0.56 -1.82 16 3 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.17 -1.49 9.82 -26.73 -0.26 -1.76 16 5 C -0.16 -1.58 5.57 -90.61 -0.50 -2.09 16 6 H 0.11 0.98 8.04 -51.93 -0.42 0.56 16 7 C 0.17 2.28 5.96 -4.04 -0.02 2.26 16 8 N -0.75 -11.30 5.56 -65.22 -0.36 -11.66 16 9 C 0.70 14.32 8.10 -86.92 -0.70 13.62 16 10 O -0.59 -14.49 14.92 5.29 0.08 -14.41 16 11 N -0.73 -15.17 4.99 -59.82 -0.30 -15.47 16 12 C 0.26 6.63 2.21 -69.09 -0.15 6.48 16 13 H 0.09 2.40 7.58 -51.93 -0.39 2.01 16 14 C -0.55 -14.16 8.46 -34.45 -0.29 -14.46 16 15 H 0.08 1.87 7.74 -52.48 -0.41 1.47 16 16 C 0.06 1.68 5.20 -17.83 -0.09 1.59 16 17 N -0.84 -23.22 9.50 55.43 0.53 -22.69 16 18 Si 0.92 20.17 29.54 -169.99 -5.02 15.15 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.42 10.90 2.81 37.16 0.10 11.00 16 23 F -0.21 -5.28 16.94 2.25 0.04 -5.24 16 24 F -0.14 -3.88 12.91 2.25 0.03 -3.85 16 25 F -0.22 -5.69 15.68 2.25 0.04 -5.65 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 29 H 0.10 0.86 8.03 -51.93 -0.42 0.44 16 30 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 31 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.39 4.68 8.42 -40.82 -0.34 4.33 16 34 H 0.39 7.01 8.55 -40.82 -0.35 6.67 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 308.85 15.07 4.65 4.65 Total: -1.00 -31.04 308.85 -6.81 -37.85 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.39 Total: 6.99 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: -2.10 Total: 14.33 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.13 Total: -49.82 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.08 Total: -14.41 kcal Atomic # 9 Polarization: -14.85 SS G_CDS: 0.10 Total: -14.74 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.04 -6.81 -37.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932923905.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.575 kcal (2) G-P(sol) polarization free energy of solvation -31.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds