Wall clock time and date at job start Tue Mar 31 2020 01:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 115.55493 * 2 1 4 4 C 1.53006 * 117.51468 * 214.29734 * 2 1 3 5 5 C 1.52999 * 60.00089 * 252.52084 * 4 2 1 6 6 H 1.09002 * 117.49803 * 107.49109 * 5 4 2 7 7 C 1.53005 * 117.51737 * 252.51928 * 5 4 2 8 8 N 1.46500 * 109.47087 * 243.71508 * 7 5 4 9 9 C 1.34773 * 119.99852 * 179.97438 * 8 7 5 10 10 O 1.21583 * 120.00183 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99894 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99948 * 180.02562 * 11 9 8 13 13 H 1.09005 * 109.47618 * 325.00494 * 12 11 9 14 14 C 1.50695 * 109.47594 * 205.00030 * 12 11 9 15 15 H 1.08003 * 119.99425 * 359.97438 * 14 12 11 16 16 C 1.37871 * 120.00423 * 180.02562 * 14 12 11 17 17 N 1.31506 * 120.00313 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99993 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47421 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47085 * 119.99773 * 18 16 14 21 21 H 1.48500 * 109.47475 * 239.99882 * 18 16 14 22 22 C 1.53001 * 109.47172 * 85.00025 * 12 11 9 23 23 F 1.39897 * 109.47244 * 59.99663 * 22 12 11 24 24 F 1.39896 * 109.47375 * 180.02562 * 22 12 11 25 25 F 1.39902 * 109.47239 * 299.99856 * 22 12 11 26 26 H 1.09005 * 109.46722 * 274.32985 * 1 2 3 27 27 H 1.08994 * 109.46708 * 34.32568 * 1 2 3 28 28 H 1.08999 * 109.46998 * 154.33136 * 1 2 3 29 29 H 1.09003 * 117.49619 * 145.02781 * 4 2 1 30 30 H 1.08995 * 117.50015 * 0.02562 * 4 2 1 31 31 H 1.08998 * 109.46915 * 3.72051 * 7 5 4 32 32 H 1.09001 * 109.46560 * 123.71648 * 7 5 4 33 33 H 0.96994 * 119.99627 * 0.02562 * 8 7 5 34 34 H 0.96994 * 119.99586 * 0.02562 * 11 9 8 35 35 H 0.97006 * 120.00700 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2369 -1.1211 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8584 1.2685 7 6 3.5485 -0.7753 1.4726 8 7 4.0090 -1.9345 2.2409 9 6 5.1530 -1.8618 2.9497 10 8 5.8026 -0.8341 2.9519 11 7 5.5770 -2.9284 3.6562 12 6 6.8202 -2.8492 4.4271 13 1 7.5380 -2.2241 3.8960 14 6 7.3918 -4.2325 4.6023 15 1 6.8799 -5.0855 4.1817 16 6 8.5676 -4.4094 5.3002 17 7 9.1901 -3.3710 5.8136 18 14 9.2756 -6.1242 5.5178 19 1 8.3913 -7.1133 4.8508 20 1 10.6291 -6.1818 4.9095 21 1 9.3698 -6.4409 6.9656 22 6 6.5309 -2.2394 5.8002 23 9 5.6096 -3.0416 6.4820 24 9 7.7181 -2.1632 6.5362 25 9 6.0003 -0.9551 5.6377 26 1 -0.3633 0.0776 1.0248 27 1 -0.3632 0.8487 -0.5795 28 1 -0.3633 -0.9262 -0.4451 29 1 3.1721 -0.8751 -1.2677 30 1 1.6119 -1.8585 -1.2682 31 1 4.3015 -0.5083 0.7311 32 1 3.3874 0.0664 2.1462 33 1 3.4910 -2.7545 2.2389 34 1 5.0589 -3.7484 3.6542 35 1 10.0176 -3.4953 6.3043 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932923905.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:36 Heat of formation + Delta-G solvation = -171.092114 kcal Electronic energy + Delta-G solvation = -22621.569004 eV Core-core repulsion = 18626.104328 eV Total energy + Delta-G solvation = -3995.464677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.39529 -48.02830 -47.70836 -40.97376 -38.97656 -36.56386 -35.30156 -34.38894 -30.72739 -29.47789 -27.04780 -26.51376 -23.53830 -22.11751 -22.00401 -21.27857 -19.84822 -18.86954 -18.75345 -18.54078 -17.91594 -17.04521 -16.60055 -16.23583 -15.98037 -15.31319 -14.99947 -14.96347 -14.82135 -14.49056 -14.42989 -14.27738 -14.11841 -14.00820 -13.90449 -13.83933 -13.07986 -12.98752 -12.72584 -12.63908 -12.30754 -12.20880 -12.19050 -11.53785 -11.37956 -10.99093 -10.74422 -10.68796 -10.27526 -9.74057 -8.19849 -6.50815 1.47299 1.48329 1.60790 1.73260 2.13962 2.38055 2.57786 2.82399 2.95824 3.33608 3.69561 3.80762 3.89450 3.93418 4.04225 4.21545 4.27913 4.48211 4.61236 4.76399 4.89382 4.95911 4.98482 5.00468 5.22858 5.25899 5.44557 5.46516 5.53048 5.58245 5.66764 6.14988 6.54850 7.17315 7.22400 7.65925 8.73199 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.029234 B = 0.004198 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.569136 B = 6667.836592 C = 7155.812872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.144 4.144 3 H 0.102 0.898 4 C -0.166 4.166 5 C -0.167 4.167 6 H 0.123 0.877 7 C 0.172 3.828 8 N -0.728 5.728 9 C 0.693 3.307 10 O -0.632 6.632 11 N -0.719 5.719 12 C 0.269 3.731 13 H 0.046 0.954 14 C -0.560 4.560 15 H 0.093 0.907 16 C 0.013 3.987 17 N -0.875 5.875 18 Si 0.985 3.015 19 H -0.254 1.254 20 H -0.278 1.278 21 H -0.281 1.281 22 C 0.412 3.588 23 F -0.203 7.203 24 F -0.151 7.151 25 F -0.219 7.219 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.412 0.588 34 H 0.411 0.589 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 -0.168 -9.675 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.163 4.163 3 H 0.120 0.880 4 C -0.203 4.203 5 C -0.185 4.185 6 H 0.141 0.859 7 C 0.048 3.952 8 N -0.385 5.385 9 C 0.393 3.607 10 O -0.513 6.513 11 N -0.373 5.373 12 C 0.161 3.839 13 H 0.063 0.937 14 C -0.597 4.597 15 H 0.111 0.889 16 C -0.192 4.192 17 N -0.509 5.509 18 Si 0.809 3.191 19 H -0.178 1.178 20 H -0.204 1.204 21 H -0.207 1.207 22 C 0.355 3.645 23 F -0.185 7.185 24 F -0.132 7.132 25 F -0.201 7.201 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.248 0.752 34 H 0.247 0.753 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.974 0.857 -9.555 16.950 hybrid contribution 0.280 -0.886 0.763 1.202 sum -13.694 -0.028 -8.792 16.273 Atomic orbital electron populations 1.21380 0.91373 1.02774 1.02258 1.22486 0.96276 0.94409 1.03151 0.87950 1.23322 1.02790 1.01475 0.92717 1.22457 0.97172 1.04065 0.94818 0.85890 1.20693 0.94096 0.87033 0.93415 1.44887 1.23786 1.18022 1.51823 1.16284 0.81862 0.83487 0.79076 1.90882 1.59027 1.31633 1.69742 1.44974 1.26534 1.15112 1.50727 1.19188 0.83056 0.98862 0.82758 0.93672 1.21256 1.08850 0.91001 1.38550 0.88872 1.26020 0.96956 1.02314 0.93876 1.70547 1.16388 1.31384 1.32628 0.85082 0.78216 0.77980 0.77840 1.17790 1.20355 1.20710 1.23366 0.73953 0.74547 0.92587 1.92979 1.68294 1.74223 1.82976 1.93372 1.44444 1.95692 1.79700 1.93062 1.87588 1.43485 1.96011 0.92111 0.91266 0.91698 0.89013 0.87108 0.92832 0.93007 0.75184 0.75312 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 10.19 71.98 0.73 -0.69 16 2 C -0.14 -2.20 6.13 -10.79 -0.07 -2.27 16 3 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.17 -2.49 9.82 30.60 0.30 -2.19 16 5 C -0.17 -2.92 5.57 -10.79 -0.06 -2.98 16 6 H 0.12 1.84 8.04 -2.39 -0.02 1.82 16 7 C 0.17 4.45 5.96 86.38 0.51 4.96 16 8 N -0.73 -21.09 5.56 -478.53 -2.66 -23.76 16 9 C 0.69 28.43 8.10 179.05 1.45 29.88 16 10 O -0.63 -32.05 14.92 -3.98 -0.06 -32.11 16 11 N -0.72 -29.72 4.99 -461.42 -2.30 -32.02 16 12 C 0.27 13.80 2.21 44.24 0.10 13.90 16 13 H 0.05 2.68 7.58 -2.38 -0.02 2.66 16 14 C -0.56 -28.43 8.46 25.60 0.22 -28.21 16 15 H 0.09 4.33 7.74 -2.91 -0.02 4.31 16 16 C 0.01 0.70 5.20 84.65 0.44 1.14 16 17 N -0.88 -48.97 9.50 21.44 0.20 -48.77 16 18 Si 0.99 40.56 29.54 68.60 2.03 42.59 16 19 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 22 C 0.41 21.85 2.81 71.98 0.20 22.05 16 23 F -0.20 -10.08 16.94 44.97 0.76 -9.31 16 24 F -0.15 -8.67 12.91 44.97 0.58 -8.08 16 25 F -0.22 -11.73 15.68 44.97 0.70 -11.03 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.66 7.90 -2.39 -0.02 0.64 16 29 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 30 H 0.11 1.32 8.05 -2.39 -0.02 1.30 16 31 H 0.05 1.51 7.88 -2.39 -0.02 1.49 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.41 8.87 8.42 -92.71 -0.78 8.09 16 34 H 0.41 13.96 8.55 -92.71 -0.79 13.17 16 35 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -67.15 308.85 2.65 -64.50 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.44 Total: 22.41 kcal Atomic # 6 Polarization: 31.76 SS G_CDS: 3.83 Total: 35.59 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -4.76 Total: -104.55 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.06 Total: -32.11 kcal Atomic # 9 Polarization: -30.48 SS G_CDS: 2.05 Total: -28.43 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -67.15 2.65 -64.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932923905.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.588 kcal (2) G-P(sol) polarization free energy of solvation -67.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds