Wall clock time and date at job start Tue Mar 31 2020 01:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08991 * 109.47094 * 2 1 4 4 N 1.46499 * 109.46879 * 239.99867 * 2 1 3 5 5 C 1.34779 * 120.00149 * 84.99894 * 4 2 1 6 6 O 1.21585 * 119.99395 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00093 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99909 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47459 * 35.00135 * 8 7 5 10 10 C 1.50697 * 109.47428 * 154.99906 * 8 7 5 11 11 H 1.08001 * 119.99890 * 0.02562 * 10 8 7 12 12 C 1.37876 * 120.00428 * 179.97438 * 10 8 7 13 13 N 1.31510 * 119.99600 * 0.02562 * 12 10 8 14 14 Si 1.86805 * 120.00227 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.46938 * 59.99973 * 14 12 10 16 16 H 1.48494 * 109.46914 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.46873 * 299.99981 * 14 12 10 18 18 C 1.53006 * 109.46995 * 275.00159 * 8 7 5 19 19 F 1.39900 * 109.46764 * 299.99774 * 18 8 7 20 20 F 1.39897 * 109.47129 * 59.99752 * 18 8 7 21 21 F 1.39903 * 109.46814 * 180.02562 * 18 8 7 22 22 C 1.52999 * 109.47006 * 120.00168 * 2 1 3 23 23 C 1.53006 * 117.50021 * 8.61803 * 22 2 1 24 24 C 1.53001 * 60.00024 * 252.51042 * 23 22 2 25 25 H 1.08998 * 109.47428 * 60.00235 * 1 2 3 26 26 H 1.09003 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46795 * 299.99793 * 1 2 3 28 28 H 0.97003 * 120.00209 * 264.99912 * 4 2 1 29 29 H 0.97003 * 120.00265 * 0.02562 * 7 5 4 30 30 H 0.97006 * 120.00212 * 179.97438 * 13 12 10 31 31 H 1.08996 * 115.55332 * 154.32707 * 22 2 1 32 32 H 1.08997 * 117.49919 * 0.02562 * 23 22 2 33 33 H 1.09003 * 117.49653 * 145.02253 * 23 22 2 34 34 H 1.09001 * 117.50308 * 252.50773 * 24 23 22 35 35 H 1.08998 * 117.49666 * 107.48611 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8583 1.1615 -2.4116 7 7 2.5967 -0.6536 -3.4575 8 6 2.7371 0.0773 -4.7193 9 1 3.0477 1.1016 -4.5133 10 6 3.7740 -0.5987 -5.5788 11 1 4.2777 -1.4845 -5.2211 12 6 4.0788 -0.0870 -6.8223 13 7 3.4651 0.9914 -7.2580 14 14 5.3637 -0.9255 -7.8880 15 1 4.9402 -2.3209 -8.1683 16 1 5.5060 -0.1845 -9.1669 17 1 6.6665 -0.9372 -7.1756 18 6 1.3948 0.0894 -5.4537 19 9 0.9962 -1.2253 -5.7182 20 9 0.4323 0.7170 -4.6558 21 9 1.5291 0.7869 -6.6590 22 6 2.0400 -0.7213 1.2492 23 6 1.0104 -1.4541 2.1117 24 6 1.6358 -0.1495 2.6096 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2490 -1.6318 -1.1526 29 1 2.8274 -1.5948 -3.4139 30 1 3.6798 1.3516 -8.1327 31 1 3.0323 -1.1642 1.1642 32 1 -0.0302 -1.4227 1.7889 33 1 1.3253 -2.3794 2.5942 34 1 2.3620 -0.2165 3.4197 35 1 1.0065 0.7404 2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932925044.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:04 Heat of formation + Delta-G solvation = -143.971665 kcal Electronic energy + Delta-G solvation = -23119.956779 eV Core-core repulsion = 19125.668133 eV Total energy + Delta-G solvation = -3994.288646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.28280 -45.93523 -45.55434 -39.62949 -37.97495 -34.74335 -33.77930 -32.51933 -29.86845 -27.83508 -24.77020 -24.45140 -22.57097 -21.63306 -20.09944 -19.75405 -18.25863 -16.94164 -16.77129 -16.54285 -16.42719 -15.60270 -15.20579 -14.76516 -14.71513 -13.95954 -13.74496 -13.37524 -12.96942 -12.83305 -12.45424 -12.33562 -12.23121 -12.03531 -11.94697 -11.90228 -11.76069 -11.46361 -11.14909 -10.96850 -10.84959 -10.77832 -10.58610 -10.37443 -10.16951 -9.63944 -9.45533 -8.74896 -8.67863 -8.11805 -6.20584 -4.44426 3.14502 3.21538 3.26500 3.28990 3.71168 3.83630 4.21278 4.57189 4.62010 4.75082 4.80720 4.92340 4.96599 5.11073 5.39003 5.44946 5.58016 5.70092 5.80560 5.89069 5.93975 5.96258 5.99807 6.13313 6.27979 6.38876 6.90048 6.91458 7.26349 7.42001 7.65647 7.74701 8.52370 8.72186 9.18818 9.30752 10.70954 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.028818 B = 0.004835 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.381509 B = 5790.071006 C = 6304.004705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.193 3.807 3 H 0.090 0.910 4 N -0.747 5.747 5 C 0.699 3.301 6 O -0.585 6.585 7 N -0.727 5.727 8 C 0.263 3.737 9 H 0.085 0.915 10 C -0.552 4.552 11 H 0.076 0.924 12 C 0.065 3.935 13 N -0.840 5.840 14 Si 0.915 3.085 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.416 3.584 19 F -0.211 7.211 20 F -0.217 7.217 21 F -0.138 7.138 22 C -0.163 4.163 23 C -0.184 4.184 24 C -0.172 4.172 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.392 0.608 29 H 0.394 0.606 30 H 0.268 0.732 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 -5.261 13.452 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.088 3.912 3 H 0.108 0.892 4 N -0.403 5.403 5 C 0.399 3.601 6 O -0.462 6.462 7 N -0.380 5.380 8 C 0.157 3.843 9 H 0.102 0.898 10 C -0.589 4.589 11 H 0.094 0.906 12 C -0.144 4.144 13 N -0.473 5.473 14 Si 0.742 3.258 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.198 1.198 18 C 0.359 3.641 19 F -0.193 7.193 20 F -0.198 7.198 21 F -0.119 7.119 22 C -0.182 4.182 23 C -0.221 4.221 24 C -0.209 4.209 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.225 0.775 29 H 0.227 0.773 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.947 -3.974 13.178 14.076 hybrid contribution 0.531 -1.368 -0.703 1.627 sum -2.416 -5.341 12.474 13.783 Atomic orbital electron populations 1.22320 0.95861 1.01878 1.02423 1.20121 0.93260 0.96542 0.81325 0.89199 1.45146 1.72866 1.13367 1.08958 1.16082 0.78353 0.85333 0.80350 1.90907 1.56609 1.14268 1.84433 1.45266 1.69729 1.13860 1.09111 1.19577 0.88363 0.97149 0.79259 0.89772 1.20838 1.22252 1.14071 1.01727 0.90594 1.25077 0.96475 0.95298 0.97546 1.70398 1.37148 1.20034 1.19712 0.86272 0.81007 0.79416 0.79128 1.19869 1.20888 1.19830 1.23192 0.88478 0.72403 0.80015 1.92980 1.92491 1.39107 1.94684 1.93069 1.68774 1.83138 1.74867 1.93400 1.94757 1.78488 1.45263 1.22580 0.99792 1.04228 0.91582 1.23178 0.99247 0.95898 1.03729 1.22934 1.03732 0.97788 0.96462 0.91541 0.92368 0.92121 0.77490 0.77305 0.92093 0.87339 0.87891 0.89052 0.88764 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 8.08 37.16 0.30 -1.79 16 2 C 0.19 2.55 2.97 -67.93 -0.20 2.35 16 3 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 4 N -0.75 -11.13 5.08 -58.68 -0.30 -11.43 16 5 C 0.70 14.14 8.06 -86.92 -0.70 13.43 16 6 O -0.58 -14.21 14.58 5.29 0.08 -14.13 16 7 N -0.73 -15.08 4.99 -59.81 -0.30 -15.38 16 8 C 0.26 6.63 2.21 -69.08 -0.15 6.47 16 9 H 0.08 2.39 7.58 -51.93 -0.39 1.99 16 10 C -0.55 -14.15 8.47 -34.44 -0.29 -14.44 16 11 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 12 C 0.06 1.70 5.20 -17.82 -0.09 1.60 16 13 N -0.84 -23.20 9.50 55.43 0.53 -22.67 16 14 Si 0.92 20.14 29.54 -169.99 -5.02 15.12 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 C 0.42 10.85 2.81 37.16 0.10 10.96 16 19 F -0.21 -5.28 16.94 2.25 0.04 -5.25 16 20 F -0.22 -5.65 15.68 2.25 0.04 -5.62 16 21 F -0.14 -3.88 12.91 2.25 0.03 -3.85 16 22 C -0.16 -1.63 5.87 -90.62 -0.53 -2.16 16 23 C -0.18 -1.54 9.57 -26.73 -0.26 -1.80 16 24 C -0.17 -1.46 9.90 -26.73 -0.26 -1.72 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.06 0.66 6.97 -51.93 -0.36 0.30 16 27 H 0.06 0.64 7.07 -51.93 -0.37 0.27 16 28 H 0.39 4.70 8.62 -40.82 -0.35 4.35 16 29 H 0.39 6.99 8.55 -40.82 -0.35 6.64 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 0.86 5.85 -51.93 -0.30 0.56 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.81 7.61 -51.93 -0.40 0.41 16 LS Contribution 302.11 15.07 4.55 4.55 Total: -1.00 -30.57 302.11 -6.59 -37.16 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.15 Total: 8.57 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -2.09 Total: 12.91 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.07 Total: -49.47 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.08 Total: -14.13 kcal Atomic # 9 Polarization: -14.81 SS G_CDS: 0.10 Total: -14.71 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.57 -6.59 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932925044.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.812 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds