Wall clock time and date at job start Tue Mar 31 2020 02:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47197 * 2 1 4 4 C 1.34777 * 119.99875 * 90.00021 * 3 2 1 5 5 O 1.21593 * 119.99688 * 174.85566 * 4 3 2 6 6 N 1.34770 * 119.99989 * 354.86064 * 4 3 2 7 7 C 1.46505 * 119.99962 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47234 * 34.99220 * 7 6 4 9 9 C 1.50697 * 109.47124 * 154.99781 * 7 6 4 10 10 H 1.08000 * 120.00565 * 359.97438 * 9 7 6 11 11 C 1.37878 * 120.00061 * 180.02562 * 9 7 6 12 12 N 1.31514 * 119.99729 * 359.97438 * 11 9 7 13 13 Si 1.86790 * 120.00273 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47186 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47516 * 119.99757 * 13 11 9 16 16 H 1.48507 * 109.47248 * 239.99789 * 13 11 9 17 17 C 1.52999 * 109.46626 * 274.99672 * 7 6 4 18 18 F 1.39896 * 109.47168 * 59.99885 * 17 7 6 19 19 F 1.39903 * 109.46887 * 179.97438 * 17 7 6 20 20 F 1.39903 * 109.46986 * 299.99628 * 17 7 6 21 21 C 1.46502 * 120.00104 * 270.00550 * 3 2 1 22 22 C 1.53004 * 117.49659 * 13.62140 * 21 3 2 23 23 C 1.53003 * 117.49723 * 304.96645 * 21 3 2 24 24 H 1.08998 * 109.47310 * 59.99705 * 1 2 3 25 25 H 1.09003 * 109.46797 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46758 * 299.99797 * 1 2 3 27 27 H 1.08998 * 109.47310 * 120.00295 * 2 1 3 28 28 H 1.09002 * 109.46758 * 240.00202 * 2 1 3 29 29 H 0.96999 * 120.00581 * 359.97438 * 6 4 3 30 30 H 0.96999 * 120.00316 * 180.02562 * 12 11 9 31 31 H 1.08997 * 115.54954 * 159.29236 * 21 3 2 32 32 H 1.08990 * 117.50126 * 0.02562 * 22 21 3 33 33 H 1.09005 * 117.49518 * 145.02556 * 22 21 3 34 34 H 1.09008 * 117.49588 * 214.98247 * 23 21 3 35 35 H 1.08994 * 117.49939 * 359.96805 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.7361 3.1280 1.1693 6 7 1.9212 1.4199 2.3320 7 6 2.1648 2.1107 3.6008 8 1 2.0000 3.1801 3.4697 9 6 1.2212 1.5818 4.6500 10 1 0.5107 0.8088 4.3971 11 6 1.2642 2.0856 5.9327 12 7 2.1290 3.0274 6.2406 13 14 0.0941 1.4306 7.2331 14 1 -0.7732 0.3833 6.6363 15 1 0.8752 0.8478 8.3535 16 1 -0.7505 2.5405 7.7432 17 6 3.6088 1.8679 4.0444 18 9 4.4848 2.3588 3.0704 19 9 3.8417 2.5280 5.2557 20 9 3.8203 0.4952 4.2127 21 6 2.2625 2.0719 -1.2687 22 6 1.6979 1.4345 -2.5400 23 6 3.2042 1.3991 -2.2695 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.5275 0.5333 2.3304 30 1 2.1595 3.3816 7.1431 31 1 2.2785 3.1604 -1.2159 32 1 1.1447 0.5017 -2.4324 33 1 1.3431 2.1039 -3.3237 34 1 3.8396 2.0452 -2.8753 35 1 3.6425 0.4430 -1.9838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932926283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:18 Heat of formation + Delta-G solvation = -132.587026 kcal Electronic energy + Delta-G solvation = -23672.723914 eV Core-core repulsion = 19678.928943 eV Total energy + Delta-G solvation = -3993.794971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.29600 -45.94883 -45.56532 -39.89912 -37.29723 -34.70694 -34.08938 -32.31685 -30.13144 -28.10597 -24.54959 -23.49834 -22.62519 -22.35985 -20.81500 -19.16879 -18.28960 -16.98648 -16.74369 -16.58324 -16.35454 -15.72844 -14.86611 -14.76451 -14.38249 -14.08146 -13.64230 -13.19632 -12.97124 -12.86013 -12.57422 -12.38453 -12.34346 -12.24152 -11.96653 -11.79260 -11.63025 -11.53952 -11.17002 -11.12820 -10.97663 -10.85153 -10.69318 -10.46021 -10.36627 -9.61938 -9.47717 -8.71746 -8.39082 -8.01002 -6.22313 -4.45984 2.95146 3.18322 3.25810 3.29336 3.59814 4.03796 4.18211 4.44670 4.64620 4.78761 4.94368 4.95303 4.96490 4.98652 5.31817 5.38811 5.56037 5.69973 5.80807 5.85622 5.88832 5.92532 6.03237 6.07231 6.24311 6.27351 6.70194 6.95823 7.23506 7.38359 7.61730 7.66330 8.50514 8.61761 9.15342 9.26195 10.69461 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.006171 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.232424 B = 4536.579234 C = 5184.314859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.103 3.897 3 N -0.608 5.608 4 C 0.705 3.295 5 O -0.580 6.580 6 N -0.724 5.724 7 C 0.261 3.739 8 H 0.085 0.915 9 C -0.551 4.551 10 H 0.077 0.923 11 C 0.065 3.935 12 N -0.839 5.839 13 Si 0.915 3.085 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.416 3.584 18 F -0.216 7.216 19 F -0.137 7.137 20 F -0.211 7.211 21 C 0.112 3.888 22 C -0.194 4.194 23 C -0.199 4.199 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.394 0.606 30 H 0.267 0.733 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 -6.149 -11.899 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.020 4.020 3 N -0.344 5.344 4 C 0.406 3.594 5 O -0.456 6.456 6 N -0.378 5.378 7 C 0.155 3.845 8 H 0.103 0.897 9 C -0.588 4.588 10 H 0.095 0.905 11 C -0.144 4.144 12 N -0.473 5.473 13 Si 0.742 3.258 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.359 3.641 18 F -0.198 7.198 19 F -0.119 7.119 20 F -0.193 7.193 21 C 0.006 3.994 22 C -0.232 4.232 23 C -0.238 4.238 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.229 0.771 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.779 -5.176 -11.655 12.876 hybrid contribution -0.378 -0.944 0.738 1.257 sum -2.157 -6.121 -10.917 12.700 Atomic orbital electron populations 1.22297 0.95774 1.02100 1.03195 1.21460 0.94621 0.83052 1.02890 1.46582 1.70335 1.13588 1.03885 1.15931 0.78941 0.84289 0.80232 1.90907 1.49476 1.19320 1.85928 1.45417 1.66454 1.21295 1.04623 1.19623 0.87268 0.97134 0.80523 0.89712 1.20900 1.19728 1.24261 0.93878 0.90511 1.25079 0.95606 0.95009 0.98708 1.70417 1.31232 1.24812 1.20795 0.86160 0.80163 0.78806 0.80686 1.19440 1.20573 1.20568 1.23175 0.91852 0.72878 0.76178 1.93075 1.74030 1.88009 1.64696 1.93400 1.95077 1.79836 1.43546 1.92979 1.96154 1.34416 1.95728 1.21321 1.02193 0.96626 0.79232 1.23424 0.96726 1.03455 0.99573 1.23399 0.92759 1.03486 1.04178 0.92161 0.91698 0.91604 0.90456 0.90546 0.77067 0.92180 0.84937 0.88374 0.88230 0.88333 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 10.01 37.16 0.37 -1.53 16 2 C 0.10 1.26 5.03 -4.04 -0.02 1.24 16 3 N -0.61 -9.65 2.82 -171.80 -0.48 -10.14 16 4 C 0.70 14.72 7.80 -86.92 -0.68 14.04 16 5 O -0.58 -14.36 14.61 5.28 0.08 -14.28 16 6 N -0.72 -15.32 4.83 -59.81 -0.29 -15.61 16 7 C 0.26 6.60 2.21 -69.08 -0.15 6.45 16 8 H 0.09 2.41 7.58 -51.93 -0.39 2.01 16 9 C -0.55 -14.11 8.46 -34.44 -0.29 -14.40 16 10 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 11 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 12 N -0.84 -23.14 9.50 55.43 0.53 -22.62 16 13 Si 0.92 20.09 29.54 -169.99 -5.02 15.07 16 14 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 17 C 0.42 10.89 2.81 37.16 0.10 10.99 16 18 F -0.22 -5.69 15.67 2.25 0.04 -5.66 16 19 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 20 F -0.21 -5.28 16.94 2.25 0.04 -5.25 16 21 C 0.11 1.56 6.26 -67.93 -0.42 1.13 16 22 C -0.19 -1.94 9.51 -26.69 -0.25 -2.19 16 23 C -0.20 -2.23 10.02 -26.69 -0.27 -2.50 16 24 H 0.06 0.62 7.20 -51.93 -0.37 0.25 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 27 H 0.08 0.97 6.59 -51.93 -0.34 0.62 16 28 H 0.08 0.77 6.25 -51.93 -0.32 0.44 16 29 H 0.39 7.29 6.28 -40.82 -0.26 7.03 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.13 2.02 7.62 -51.93 -0.40 1.63 16 32 H 0.10 0.90 5.84 -51.93 -0.30 0.59 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.00 8.14 -51.92 -0.42 0.57 16 35 H 0.09 1.05 7.83 -51.93 -0.41 0.64 16 LS Contribution 299.18 15.07 4.51 4.51 Total: -1.00 -30.60 299.18 -6.31 -36.91 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.02 Total: 6.07 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: -1.70 Total: 14.83 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.25 Total: -48.36 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.08 Total: -14.28 kcal Atomic # 9 Polarization: -14.84 SS G_CDS: 0.10 Total: -14.73 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.60 -6.31 -36.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932926283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.678 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds