Wall clock time and date at job start Tue Mar 31 2020 02:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.47197 * 2 1 4 4 C 1.34777 * 119.99875 * 90.00021 * 3 2 1 5 5 O 1.21593 * 119.99688 * 174.85566 * 4 3 2 6 6 N 1.34770 * 119.99989 * 354.86064 * 4 3 2 7 7 C 1.46505 * 119.99962 * 180.02562 * 6 4 3 8 8 H 1.08999 * 109.47234 * 34.99220 * 7 6 4 9 9 C 1.50697 * 109.47124 * 154.99781 * 7 6 4 10 10 H 1.08000 * 120.00565 * 359.97438 * 9 7 6 11 11 C 1.37878 * 120.00061 * 180.02562 * 9 7 6 12 12 N 1.31514 * 119.99729 * 359.97438 * 11 9 7 13 13 Si 1.86790 * 120.00273 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47186 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47516 * 119.99757 * 13 11 9 16 16 H 1.48507 * 109.47248 * 239.99789 * 13 11 9 17 17 C 1.52999 * 109.46626 * 274.99672 * 7 6 4 18 18 F 1.39896 * 109.47168 * 59.99885 * 17 7 6 19 19 F 1.39903 * 109.46887 * 179.97438 * 17 7 6 20 20 F 1.39903 * 109.46986 * 299.99628 * 17 7 6 21 21 C 1.46502 * 120.00104 * 270.00550 * 3 2 1 22 22 C 1.53004 * 117.49659 * 13.62140 * 21 3 2 23 23 C 1.53003 * 117.49723 * 304.96645 * 21 3 2 24 24 H 1.08998 * 109.47310 * 59.99705 * 1 2 3 25 25 H 1.09003 * 109.46797 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46758 * 299.99797 * 1 2 3 27 27 H 1.08998 * 109.47310 * 120.00295 * 2 1 3 28 28 H 1.09002 * 109.46758 * 240.00202 * 2 1 3 29 29 H 0.96999 * 120.00581 * 359.97438 * 6 4 3 30 30 H 0.96999 * 120.00316 * 180.02562 * 12 11 9 31 31 H 1.08997 * 115.54954 * 159.29236 * 21 3 2 32 32 H 1.08990 * 117.50126 * 0.02562 * 22 21 3 33 33 H 1.09005 * 117.49518 * 145.02556 * 22 21 3 34 34 H 1.09008 * 117.49588 * 214.98247 * 23 21 3 35 35 H 1.08994 * 117.49939 * 359.96805 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0165 1.1672 5 8 2.7361 3.1280 1.1693 6 7 1.9212 1.4199 2.3320 7 6 2.1648 2.1107 3.6008 8 1 2.0000 3.1801 3.4697 9 6 1.2212 1.5818 4.6500 10 1 0.5107 0.8088 4.3971 11 6 1.2642 2.0856 5.9327 12 7 2.1290 3.0274 6.2406 13 14 0.0941 1.4306 7.2331 14 1 -0.7732 0.3833 6.6363 15 1 0.8752 0.8478 8.3535 16 1 -0.7505 2.5405 7.7432 17 6 3.6088 1.8679 4.0444 18 9 4.4848 2.3588 3.0704 19 9 3.8417 2.5280 5.2557 20 9 3.8203 0.4952 4.2127 21 6 2.2625 2.0719 -1.2687 22 6 1.6979 1.4345 -2.5400 23 6 3.2042 1.3991 -2.2695 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.5275 0.5333 2.3304 30 1 2.1595 3.3816 7.1431 31 1 2.2785 3.1604 -1.2159 32 1 1.1447 0.5017 -2.4324 33 1 1.3431 2.1039 -3.3237 34 1 3.8396 2.0452 -2.8753 35 1 3.6425 0.4430 -1.9838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932926283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:17 Heat of formation + Delta-G solvation = -151.773041 kcal Electronic energy + Delta-G solvation = -23673.555882 eV Core-core repulsion = 19678.928943 eV Total energy + Delta-G solvation = -3994.626939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.41701 -48.05231 -47.72657 -41.33867 -38.57767 -36.50900 -35.39915 -34.11724 -31.28977 -29.94662 -26.59901 -24.50108 -24.23247 -23.22459 -22.51402 -20.74934 -19.63945 -18.93522 -18.75258 -18.62458 -17.77577 -17.49821 -16.73258 -16.17955 -15.69412 -15.56090 -14.99202 -14.95389 -14.65422 -14.49872 -14.45122 -14.28470 -14.03100 -13.97060 -13.86562 -13.58500 -13.06921 -12.74288 -12.67280 -12.56577 -12.33467 -12.22052 -12.06253 -11.89814 -11.55041 -11.42113 -11.14535 -10.69947 -10.14896 -9.30453 -8.21176 -6.52363 1.46050 1.47223 1.56898 1.63476 2.05486 2.36437 2.53570 2.92877 2.97485 3.03961 3.77331 3.80036 3.86785 3.98182 4.05333 4.10122 4.18838 4.37714 4.49037 4.75156 4.77437 4.83989 4.95726 5.01006 5.09417 5.24307 5.38412 5.42796 5.48194 5.64983 5.71146 6.03285 6.52964 7.04003 7.18264 7.61253 8.72164 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.006171 C = 0.005400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.232424 B = 4536.579234 C = 5184.314859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.096 3.904 3 N -0.597 5.597 4 C 0.697 3.303 5 O -0.629 6.629 6 N -0.718 5.718 7 C 0.269 3.731 8 H 0.044 0.956 9 C -0.559 4.559 10 H 0.092 0.908 11 C 0.014 3.986 12 N -0.876 5.876 13 Si 0.986 3.014 14 H -0.254 1.254 15 H -0.280 1.280 16 H -0.278 1.278 17 C 0.413 3.587 18 F -0.220 7.220 19 F -0.150 7.150 20 F -0.203 7.203 21 C 0.065 3.935 22 C -0.156 4.156 23 C -0.190 4.190 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.408 0.592 30 H 0.269 0.731 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.674 -8.503 -13.259 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.026 4.026 3 N -0.332 5.332 4 C 0.398 3.602 5 O -0.510 6.510 6 N -0.373 5.373 7 C 0.161 3.839 8 H 0.062 0.938 9 C -0.596 4.596 10 H 0.110 0.890 11 C -0.191 4.191 12 N -0.510 5.510 13 Si 0.809 3.191 14 H -0.178 1.178 15 H -0.206 1.206 16 H -0.203 1.203 17 C 0.356 3.644 18 F -0.202 7.202 19 F -0.131 7.131 20 F -0.185 7.185 21 C -0.040 4.040 22 C -0.193 4.193 23 C -0.229 4.229 24 H 0.086 0.914 25 H 0.112 0.888 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.126 0.874 29 H 0.245 0.755 30 H 0.079 0.921 31 H 0.124 0.876 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.226 -7.589 -13.085 15.467 hybrid contribution 0.108 -0.209 1.054 1.079 sum -3.119 -7.798 -12.031 14.673 Atomic orbital electron populations 1.22244 0.94414 1.03678 1.02339 1.21785 0.95702 0.80890 1.04245 1.46595 1.69090 1.14739 1.02814 1.16180 0.78730 0.83933 0.81337 1.90862 1.51674 1.21604 1.86811 1.45139 1.66793 1.21672 1.03679 1.19200 0.86883 0.95394 0.82393 0.93797 1.21223 1.19857 1.24489 0.94047 0.89043 1.26024 0.97071 0.95030 1.00958 1.70547 1.32997 1.26113 1.21310 0.85079 0.78004 0.78448 0.77582 1.17761 1.20602 1.20309 1.23347 0.92292 0.73032 0.75703 1.93062 1.74218 1.88131 1.64764 1.93374 1.95201 1.80195 1.44379 1.92977 1.96146 1.33700 1.95682 1.21479 1.06942 0.95903 0.79706 1.23528 0.95777 1.03601 0.96428 1.23466 0.93887 1.03201 1.02306 0.91377 0.88847 0.94111 0.90887 0.87405 0.75471 0.92133 0.87550 0.86595 0.86297 0.87403 0.88385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 10.01 71.98 0.72 -2.46 16 2 C 0.10 2.09 5.03 86.38 0.43 2.52 16 3 N -0.60 -18.60 2.82 -815.70 -2.30 -20.90 16 4 C 0.70 29.81 7.80 179.06 1.40 31.21 16 5 O -0.63 -32.72 14.61 -4.01 -0.06 -32.78 16 6 N -0.72 -30.82 4.83 -461.41 -2.23 -33.04 16 7 C 0.27 14.02 2.21 44.24 0.10 14.12 16 8 H 0.04 2.65 7.58 -2.39 -0.02 2.63 16 9 C -0.56 -28.72 8.46 25.60 0.22 -28.50 16 10 H 0.09 4.32 7.74 -2.91 -0.02 4.30 16 11 C 0.01 0.75 5.20 84.65 0.44 1.19 16 12 N -0.88 -49.24 9.50 21.45 0.20 -49.03 16 13 Si 0.99 40.68 29.54 68.60 2.03 42.70 16 14 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 15 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 16 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 17 C 0.41 22.15 2.81 71.98 0.20 22.35 16 18 F -0.22 -11.94 15.67 44.97 0.70 -11.23 16 19 F -0.15 -8.69 12.91 44.97 0.58 -8.11 16 20 F -0.20 -10.20 16.94 44.97 0.76 -9.44 16 21 C 0.06 1.74 6.26 44.99 0.28 2.02 16 22 C -0.16 -2.57 9.51 30.62 0.29 -2.28 16 23 C -0.19 -3.79 10.02 30.62 0.31 -3.48 16 24 H 0.07 1.18 7.20 -2.39 -0.02 1.17 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 0.98 8.06 -2.39 -0.02 0.96 16 27 H 0.07 1.67 6.59 -2.39 -0.02 1.66 16 28 H 0.11 1.72 6.25 -2.39 -0.01 1.70 16 29 H 0.41 14.91 6.28 -92.71 -0.58 14.33 16 30 H 0.27 14.25 8.31 -92.71 -0.77 13.47 16 31 H 0.11 3.39 7.62 -2.39 -0.02 3.37 16 32 H 0.12 1.55 5.84 -2.39 -0.01 1.53 16 33 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.10 1.89 7.83 -2.39 -0.02 1.88 16 Total: -1.00 -68.49 299.18 4.63 -63.86 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.55 Total: 21.28 kcal Atomic # 6 Polarization: 32.30 SS G_CDS: 4.39 Total: 36.69 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.33 Total: -102.97 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.06 Total: -32.78 kcal Atomic # 9 Polarization: -30.83 SS G_CDS: 2.05 Total: -28.78 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.70 kcal Total: -68.49 4.63 -63.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932926283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.909 kcal (2) G-P(sol) polarization free energy of solvation -68.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds