Wall clock time and date at job start Tue Mar 31 2020 02:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47296 * 181.92690 * 3 2 1 5 5 C 1.37099 * 120.00007 * 94.32415 * 4 3 2 6 6 H 1.07996 * 119.99884 * 225.34192 * 5 4 3 7 7 C 1.38942 * 119.99968 * 45.34494 * 5 4 3 8 8 N 1.31413 * 120.00160 * 204.77146 * 7 5 4 9 9 Si 1.86803 * 120.00092 * 24.76922 * 7 5 4 10 10 H 1.48494 * 109.47091 * 88.15363 * 9 7 5 11 11 H 1.48504 * 109.47148 * 328.15110 * 9 7 5 12 12 H 1.48502 * 109.47221 * 208.15538 * 9 7 5 13 13 C 1.34775 * 119.99961 * 274.33203 * 4 3 2 14 14 O 1.21303 * 120.00089 * 5.72191 * 13 4 3 15 15 C 1.50701 * 120.00209 * 185.72561 * 13 4 3 16 16 H 1.09001 * 109.51006 * 38.74934 * 15 13 4 17 17 C 1.53295 * 109.50963 * 278.64568 * 15 13 4 18 18 N 1.47154 * 108.38024 * 187.77149 * 17 15 13 19 19 C 1.34779 * 120.97988 * 230.51361 * 18 17 15 20 20 C 1.50691 * 120.00200 * 3.05715 * 19 18 17 21 21 O 1.21282 * 119.99653 * 183.05846 * 19 18 17 22 22 C 1.47150 * 118.03792 * 50.53875 * 18 17 15 23 23 C 1.53299 * 108.38177 * 309.46514 * 22 18 17 24 24 O 1.42958 * 109.22437 * 52.29979 * 23 22 18 25 25 H 4.40645 * 5.51483 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47459 * 61.92567 * 3 2 1 27 27 H 1.08998 * 109.46977 * 301.92254 * 3 2 1 28 28 H 0.97005 * 120.00161 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.68565 * 307.49495 * 17 15 13 30 30 H 1.08998 * 109.68244 * 68.01399 * 17 15 13 31 31 H 1.09002 * 109.47632 * 84.34726 * 20 19 18 32 32 H 1.09005 * 109.47373 * 204.34626 * 20 19 18 33 33 H 1.09003 * 109.47494 * 324.34851 * 20 19 18 34 34 H 1.08999 * 109.68372 * 69.18694 * 22 18 17 35 35 H 1.09004 * 109.68321 * 189.70198 * 22 18 17 36 36 H 1.08999 * 109.51195 * 172.23347 * 23 22 18 37 37 H 1.09008 * 109.51221 * 292.32366 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3813 0.0464 5 6 3.4464 1.9577 1.2504 6 1 3.1102 2.9596 1.4729 7 6 4.1959 1.2530 2.1843 8 7 4.0998 1.5475 3.4614 9 14 5.3402 -0.1133 1.6245 10 1 6.6711 0.4584 1.2979 11 1 4.7742 -0.7702 0.4189 12 1 5.4847 -1.1145 2.7117 13 6 3.2750 2.0849 -1.0944 14 8 2.9014 1.6135 -2.1478 15 6 3.8970 3.4571 -1.0614 16 1 4.7222 3.4657 -0.3492 17 6 2.8435 4.4867 -0.6371 18 7 3.4199 5.8316 -0.7931 19 6 3.3686 6.7292 0.2111 20 6 2.7757 6.3394 1.5405 21 8 3.7996 7.8505 0.0446 22 6 4.0535 6.1678 -2.0779 23 6 5.0480 5.0562 -2.4321 24 8 4.3847 3.7917 -2.3629 25 1 -1.0502 -0.0003 -0.0002 26 1 3.0096 -0.4828 -0.9067 27 1 3.0095 -0.5426 0.8722 28 1 4.6228 1.0552 4.1134 29 1 1.9605 4.3902 -1.2687 30 1 2.5691 4.3229 0.4050 31 1 3.5355 5.8460 2.1466 32 1 2.4226 7.2322 2.0566 33 1 1.9402 5.6581 1.3800 34 1 3.2923 6.2406 -2.8547 35 1 4.5802 7.1181 -1.9900 36 1 5.4262 5.2143 -3.4421 37 1 5.8782 5.0719 -1.7259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935812085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:13 Heat of formation + Delta-G solvation = -33.229195 kcal Electronic energy + Delta-G solvation = -22866.681942 eV Core-core repulsion = 19419.052190 eV Total energy + Delta-G solvation = -3447.629752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.30163 -39.01587 -37.67711 -35.30950 -34.52324 -32.87727 -32.00811 -31.46309 -29.75267 -27.70067 -26.55225 -25.20899 -23.96728 -22.18481 -19.38783 -19.12202 -18.54714 -17.36321 -16.70545 -16.60477 -15.96070 -15.88153 -15.38308 -15.11158 -14.59942 -14.48008 -14.18953 -13.64217 -13.42368 -13.27032 -13.05373 -12.94619 -12.40179 -12.27282 -11.95324 -11.88472 -11.68923 -11.28689 -11.13573 -10.90368 -10.65605 -10.32050 -9.96871 -9.84377 -9.62947 -9.46177 -9.40491 -8.76789 -8.39400 -8.03178 -6.73999 -4.41316 2.73766 2.91192 2.99188 3.08427 3.13192 3.15748 3.39810 3.49316 3.85931 3.95519 4.57899 4.71989 4.77266 4.92524 5.06949 5.20386 5.25155 5.33867 5.48660 5.49297 5.56689 5.67419 5.75513 5.84301 5.86111 6.06746 6.09200 6.17285 6.21644 6.48299 6.50333 7.09952 7.34326 7.45643 7.80984 7.97966 8.22913 8.25682 8.72091 9.05019 9.40833 10.34900 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.006898 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.174414 B = 4057.939417 C = 4454.271409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.164 4.164 3 C 0.213 3.787 4 N -0.457 5.457 5 C -0.366 4.366 6 H 0.102 0.898 7 C 0.079 3.921 8 N -0.841 5.841 9 Si 0.859 3.141 10 H -0.271 1.271 11 H -0.252 1.252 12 H -0.279 1.279 13 C 0.495 3.505 14 O -0.565 6.565 15 C 0.080 3.920 16 H 0.096 0.904 17 C 0.086 3.914 18 N -0.614 5.614 19 C 0.520 3.480 20 C -0.177 4.177 21 O -0.557 6.557 22 C 0.075 3.925 23 C 0.048 3.952 24 O -0.358 6.358 25 H 0.211 0.789 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.279 0.721 29 H 0.077 0.923 30 H 0.115 0.885 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 3.257 -3.792 5.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.165 4.165 3 C 0.091 3.909 4 N -0.179 5.179 5 C -0.492 4.492 6 H 0.119 0.881 7 C -0.131 4.131 8 N -0.473 5.473 9 Si 0.684 3.316 10 H -0.196 1.196 11 H -0.176 1.176 12 H -0.204 1.204 13 C 0.283 3.717 14 O -0.446 6.446 15 C 0.018 3.982 16 H 0.114 0.886 17 C -0.037 4.037 18 N -0.348 5.348 19 C 0.310 3.690 20 C -0.236 4.236 21 O -0.436 6.436 22 C -0.047 4.047 23 C -0.030 4.030 24 O -0.276 6.276 25 H 0.228 0.772 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.568 3.462 -4.328 5.571 hybrid contribution 0.436 -0.567 0.323 0.785 sum -0.132 2.895 -4.004 4.943 Atomic orbital electron populations 1.24657 0.95647 1.01067 1.03539 1.23833 0.94993 0.99534 0.98131 1.18848 0.83379 0.86237 1.02391 1.43518 1.57263 1.11190 1.05933 1.18982 1.35862 1.03436 0.90891 0.88064 1.25444 0.95799 0.97419 0.94480 1.69806 1.36411 1.40556 1.00511 0.87265 0.82474 0.82058 0.79847 1.19621 1.17593 1.20436 1.19852 0.81369 0.86839 0.83660 1.90606 1.52073 1.71337 1.30632 1.22046 0.97559 0.92842 0.85739 0.88635 1.22431 0.96214 0.80351 1.04739 1.48227 1.58363 1.14169 1.14068 1.20893 0.78136 0.84099 0.85860 1.21976 1.03201 1.04249 0.94179 1.90663 1.49219 1.20661 1.83036 1.22299 0.97205 0.99857 0.85387 1.22978 0.93968 0.83364 1.02656 1.88041 1.75167 1.35440 1.28930 0.77236 0.89319 0.88752 0.91081 0.90517 0.86747 0.87935 0.89141 0.89583 0.90782 0.88321 0.87636 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.12 19.25 29.55 0.57 -3.55 16 2 C -0.16 -3.35 13.64 -37.12 -0.51 -3.86 16 3 C 0.21 4.50 3.87 -6.83 -0.03 4.48 16 4 N -0.46 -10.12 1.97 -117.93 -0.23 -10.35 16 5 C -0.37 -8.36 8.32 -14.94 -0.12 -8.49 16 6 H 0.10 2.33 5.87 -52.49 -0.31 2.02 16 7 C 0.08 1.86 5.16 -17.47 -0.09 1.77 16 8 N -0.84 -20.72 13.96 55.50 0.77 -19.94 16 9 Si 0.86 18.00 26.53 -169.99 -4.51 13.49 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.25 -5.07 5.34 56.52 0.30 -4.77 16 12 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.50 10.96 6.84 -10.99 -0.08 10.89 16 14 O -0.57 -13.96 16.35 -13.39 -0.22 -14.18 16 15 C 0.08 1.52 2.47 -27.73 -0.07 1.45 16 16 H 0.10 1.85 7.47 -51.93 -0.39 1.46 16 17 C 0.09 1.43 5.55 -3.53 -0.02 1.41 16 18 N -0.61 -9.64 3.02 -172.28 -0.52 -10.16 16 19 C 0.52 8.41 7.82 -10.99 -0.09 8.32 16 20 C -0.18 -2.38 9.33 36.00 0.34 -2.04 16 21 O -0.56 -10.50 16.58 5.56 0.09 -10.40 16 22 C 0.08 1.06 6.63 -3.53 -0.02 1.03 16 23 C 0.05 0.68 6.98 37.31 0.26 0.94 16 24 O -0.36 -6.65 10.01 -54.16 -0.54 -7.19 16 25 H 0.21 2.80 7.80 -54.08 -0.42 2.37 16 26 H 0.09 1.83 7.59 -51.93 -0.39 1.44 16 27 H 0.09 1.94 4.82 -51.93 -0.25 1.69 16 28 H 0.28 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.11 1.88 3.66 -51.93 -0.19 1.69 16 31 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.08 6.47 -51.93 -0.34 0.75 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 1.35 7.10 -51.93 -0.37 0.98 16 36 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 LS Contribution 311.73 15.07 4.70 4.70 Total: -1.00 -29.76 311.73 -4.74 -34.50 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.43 Total: 7.17 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 0.15 Total: 12.36 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.02 Total: -40.45 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.67 Total: -31.77 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -4.51 Total: 13.49 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.76 -4.74 -34.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935812085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.274 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds