Wall clock time and date at job start Tue Mar 31 2020 02:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47296 * 181.92690 * 3 2 1 5 5 C 1.37099 * 120.00007 * 94.32415 * 4 3 2 6 6 H 1.07996 * 119.99884 * 225.34192 * 5 4 3 7 7 C 1.38942 * 119.99968 * 45.34494 * 5 4 3 8 8 N 1.31413 * 120.00160 * 204.77146 * 7 5 4 9 9 Si 1.86803 * 120.00092 * 24.76922 * 7 5 4 10 10 H 1.48494 * 109.47091 * 88.15363 * 9 7 5 11 11 H 1.48504 * 109.47148 * 328.15110 * 9 7 5 12 12 H 1.48502 * 109.47221 * 208.15538 * 9 7 5 13 13 C 1.34775 * 119.99961 * 274.33203 * 4 3 2 14 14 O 1.21303 * 120.00089 * 5.72191 * 13 4 3 15 15 C 1.50701 * 120.00209 * 185.72561 * 13 4 3 16 16 H 1.09001 * 109.51006 * 38.74934 * 15 13 4 17 17 C 1.53295 * 109.50963 * 278.64568 * 15 13 4 18 18 N 1.47154 * 108.38024 * 187.77149 * 17 15 13 19 19 C 1.34779 * 120.97988 * 230.51361 * 18 17 15 20 20 C 1.50691 * 120.00200 * 3.05715 * 19 18 17 21 21 O 1.21282 * 119.99653 * 183.05846 * 19 18 17 22 22 C 1.47150 * 118.03792 * 50.53875 * 18 17 15 23 23 C 1.53299 * 108.38177 * 309.46514 * 22 18 17 24 24 O 1.42958 * 109.22437 * 52.29979 * 23 22 18 25 25 H 4.40645 * 5.51483 * 179.97438 * 4 1 2 26 26 H 1.08995 * 109.47459 * 61.92567 * 3 2 1 27 27 H 1.08998 * 109.46977 * 301.92254 * 3 2 1 28 28 H 0.97005 * 120.00161 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.68565 * 307.49495 * 17 15 13 30 30 H 1.08998 * 109.68244 * 68.01399 * 17 15 13 31 31 H 1.09002 * 109.47632 * 84.34726 * 20 19 18 32 32 H 1.09005 * 109.47373 * 204.34626 * 20 19 18 33 33 H 1.09003 * 109.47494 * 324.34851 * 20 19 18 34 34 H 1.08999 * 109.68372 * 69.18694 * 22 18 17 35 35 H 1.09004 * 109.68321 * 189.70198 * 22 18 17 36 36 H 1.08999 * 109.51195 * 172.23347 * 23 22 18 37 37 H 1.09008 * 109.51221 * 292.32366 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3813 0.0464 5 6 3.4464 1.9577 1.2504 6 1 3.1102 2.9596 1.4729 7 6 4.1959 1.2530 2.1843 8 7 4.0998 1.5475 3.4614 9 14 5.3402 -0.1133 1.6245 10 1 6.6711 0.4584 1.2979 11 1 4.7742 -0.7702 0.4189 12 1 5.4847 -1.1145 2.7117 13 6 3.2750 2.0849 -1.0944 14 8 2.9014 1.6135 -2.1478 15 6 3.8970 3.4571 -1.0614 16 1 4.7222 3.4657 -0.3492 17 6 2.8435 4.4867 -0.6371 18 7 3.4199 5.8316 -0.7931 19 6 3.3686 6.7292 0.2111 20 6 2.7757 6.3394 1.5405 21 8 3.7996 7.8505 0.0446 22 6 4.0535 6.1678 -2.0779 23 6 5.0480 5.0562 -2.4321 24 8 4.3847 3.7917 -2.3629 25 1 -1.0502 -0.0003 -0.0002 26 1 3.0096 -0.4828 -0.9067 27 1 3.0095 -0.5426 0.8722 28 1 4.6228 1.0552 4.1134 29 1 1.9605 4.3902 -1.2687 30 1 2.5691 4.3229 0.4050 31 1 3.5355 5.8460 2.1466 32 1 2.4226 7.2322 2.0566 33 1 1.9402 5.6581 1.3800 34 1 3.2923 6.2406 -2.8547 35 1 4.5802 7.1181 -1.9900 36 1 5.4262 5.2143 -3.4421 37 1 5.8782 5.0719 -1.7259 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935812085.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:12 Heat of formation + Delta-G solvation = -51.967756 kcal Electronic energy + Delta-G solvation = -22867.494507 eV Core-core repulsion = 19419.052190 eV Total energy + Delta-G solvation = -3448.442317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70560 -40.57469 -39.10221 -37.04890 -35.88212 -34.50714 -33.63958 -32.81496 -31.02397 -29.04984 -28.03602 -26.92508 -25.38565 -23.45946 -21.07150 -20.48506 -20.06673 -18.84138 -18.13146 -18.06650 -17.53225 -17.33395 -16.69595 -16.54645 -16.16061 -15.96615 -15.70929 -15.07504 -14.83976 -14.70692 -14.57654 -14.44544 -13.87114 -13.74481 -13.46110 -13.07088 -13.03144 -12.80433 -12.66874 -12.49997 -11.94706 -11.92597 -11.42374 -11.31111 -11.19049 -10.98482 -10.93941 -10.48580 -9.82635 -9.71213 -8.55408 -6.23860 1.23934 1.37395 1.44609 1.45059 1.58108 1.62742 1.90183 1.99622 2.21570 2.39517 2.85616 3.25208 3.52351 3.59921 3.69386 3.85822 3.94608 4.08766 4.17482 4.30349 4.37694 4.43933 4.45424 4.55509 4.58486 4.65185 4.66623 4.83897 5.03752 5.12306 5.25651 5.36366 5.96422 6.06996 6.18013 6.20251 6.76433 6.92452 6.98360 7.28470 7.65910 8.55769 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.006898 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.174414 B = 4057.939417 C = 4454.271409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.227 4.227 3 C 0.210 3.790 4 N -0.459 5.459 5 C -0.360 4.360 6 H 0.097 0.903 7 C 0.051 3.949 8 N -0.871 5.871 9 Si 0.897 3.103 10 H -0.275 1.275 11 H -0.244 1.244 12 H -0.275 1.275 13 C 0.490 3.510 14 O -0.595 6.595 15 C 0.085 3.915 16 H 0.090 0.910 17 C 0.098 3.902 18 N -0.613 5.613 19 C 0.518 3.482 20 C -0.172 4.172 21 O -0.585 6.585 22 C 0.074 3.926 23 C 0.046 3.954 24 O -0.379 6.379 25 H 0.254 0.746 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.282 0.718 29 H 0.076 0.924 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 3.371 -4.165 5.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.228 4.228 3 C 0.088 3.912 4 N -0.181 5.181 5 C -0.487 4.487 6 H 0.115 0.885 7 C -0.158 4.158 8 N -0.505 5.505 9 Si 0.720 3.280 10 H -0.201 1.201 11 H -0.168 1.168 12 H -0.200 1.200 13 C 0.279 3.721 14 O -0.478 6.478 15 C 0.024 3.976 16 H 0.107 0.893 17 C -0.025 4.025 18 N -0.347 5.347 19 C 0.309 3.691 20 C -0.231 4.231 21 O -0.466 6.466 22 C -0.049 4.049 23 C -0.031 4.031 24 O -0.298 6.298 25 H 0.270 0.730 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.156 0.844 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.199 3.565 -4.701 6.020 hybrid contribution 0.572 -0.583 0.390 0.905 sum -0.627 2.982 -4.311 5.279 Atomic orbital electron populations 1.25669 0.96540 0.98035 1.00570 1.23971 0.95590 1.02341 1.00909 1.18797 0.84618 0.85586 1.02183 1.43623 1.57138 1.11625 1.05725 1.18988 1.35527 1.03310 0.90850 0.88548 1.25841 0.96538 0.98971 0.94403 1.69842 1.37490 1.41965 1.01229 0.86653 0.80818 0.80547 0.79937 1.20091 1.16762 1.19979 1.20340 0.80872 0.87797 0.83108 1.90574 1.53446 1.72304 1.31519 1.21888 0.97688 0.91856 0.86186 0.89271 1.22230 0.95362 0.80267 1.04666 1.48281 1.58142 1.13562 1.14729 1.21314 0.77605 0.83629 0.86550 1.21982 1.03226 1.05117 0.92793 1.90649 1.50595 1.21773 1.83595 1.22425 0.97514 1.00014 0.84903 1.23252 0.93594 0.81497 1.04725 1.88012 1.75702 1.37656 1.28391 0.72951 0.89689 0.88793 0.90794 0.90596 0.86595 0.88083 0.87642 0.88745 0.89761 0.87732 0.84413 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.29 19.25 74.32 1.43 -4.86 16 2 C -0.23 -9.06 13.64 31.13 0.42 -8.63 16 3 C 0.21 8.82 3.87 84.57 0.33 9.15 16 4 N -0.46 -20.26 1.97 -645.41 -1.27 -21.53 16 5 C -0.36 -16.41 8.32 84.04 0.70 -15.71 16 6 H 0.10 4.42 5.87 -2.91 -0.02 4.41 16 7 C 0.05 2.37 5.16 84.92 0.44 2.81 16 8 N -0.87 -42.80 13.96 21.66 0.30 -42.50 16 9 Si 0.90 36.61 26.53 68.60 1.82 38.43 16 10 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.24 -9.57 5.34 99.48 0.53 -9.04 16 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 13 C 0.49 21.62 6.84 87.66 0.60 22.22 16 14 O -0.59 -29.39 16.35 15.00 0.25 -29.15 16 15 C 0.09 3.21 2.47 29.95 0.07 3.29 16 16 H 0.09 3.44 7.47 -2.39 -0.02 3.42 16 17 C 0.10 3.20 5.55 86.35 0.48 3.68 16 18 N -0.61 -18.50 3.02 -817.35 -2.47 -20.97 16 19 C 0.52 16.14 7.82 87.65 0.69 16.82 16 20 C -0.17 -4.40 9.33 71.23 0.66 -3.74 16 21 O -0.59 -21.45 16.58 -3.04 -0.05 -21.50 16 22 C 0.07 1.94 6.63 86.36 0.57 2.51 16 23 C 0.05 1.22 6.98 72.08 0.50 1.72 16 24 O -0.38 -13.70 10.01 -130.88 -1.31 -15.01 16 25 H 0.25 5.60 7.80 -4.41 -0.03 5.57 16 26 H 0.09 3.54 7.59 -2.39 -0.02 3.52 16 27 H 0.09 3.85 4.82 -2.39 -0.01 3.83 16 28 H 0.28 13.04 8.31 -92.70 -0.77 12.27 16 29 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.12 3.73 3.66 -2.39 -0.01 3.72 16 31 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.10 2.36 8.14 -2.38 -0.02 2.35 16 33 H 0.09 2.24 6.47 -2.39 -0.02 2.23 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.10 2.68 7.10 -2.38 -0.02 2.66 16 36 H 0.14 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.06 1.50 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -62.70 311.73 5.08 -57.62 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.92 Total: 25.34 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 6.90 Total: 29.26 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -3.44 Total: -85.00 kcal Atomic # 8 Polarization: -64.54 SS G_CDS: -1.11 Total: -65.66 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 1.82 Total: 38.43 kcal Total: -62.70 5.08 -57.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935812085.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.651 kcal (2) G-P(sol) polarization free energy of solvation -62.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds