Wall clock time and date at job start Tue Mar 31 2020 01:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 110.00350 * 2 1 4 4 C 1.54330 * 109.88061 * 238.90313 * 2 1 3 5 5 H 1.08999 * 110.72284 * 336.93006 * 4 2 1 6 6 N 1.46494 * 110.71879 * 100.03500 * 4 2 1 7 7 C 1.36945 * 119.99612 * 202.55997 * 6 4 2 8 8 H 1.07999 * 120.00077 * 359.97438 * 7 6 4 9 9 C 1.38812 * 119.99637 * 179.97438 * 7 6 4 10 10 N 1.31624 * 119.99539 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00216 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46712 * 90.00052 * 11 9 7 13 13 H 1.48499 * 109.46916 * 209.99467 * 11 9 7 14 14 H 1.48492 * 109.46909 * 330.00070 * 11 9 7 15 15 C 1.55159 * 103.09869 * 218.48314 * 4 2 1 16 16 C 1.54903 * 101.58480 * 35.41277 * 15 4 2 17 17 N 1.47321 * 110.06260 * 121.17610 * 2 1 3 18 18 C 1.34775 * 125.60981 * 298.24183 * 17 2 1 19 19 O 1.21285 * 120.00651 * 359.83785 * 18 17 2 20 20 C 1.50706 * 119.99890 * 179.83890 * 18 17 2 21 21 C 1.52996 * 109.47344 * 179.97438 * 20 18 17 22 22 F 1.39902 * 109.46824 * 60.00091 * 21 20 18 23 23 F 1.39904 * 109.47168 * 179.97438 * 21 20 18 24 24 F 1.39898 * 109.47180 * 300.00458 * 21 20 18 25 25 H 1.09000 * 109.47709 * 181.09635 * 1 2 3 26 26 H 1.09004 * 109.47299 * 301.09866 * 1 2 3 27 27 H 1.09003 * 109.46915 * 61.09242 * 1 2 3 28 28 H 0.96995 * 120.00290 * 22.82888 * 6 4 2 29 29 H 0.97005 * 119.99727 * 180.02562 * 10 9 7 30 30 H 1.09004 * 111.00139 * 153.49299 * 15 4 2 31 31 H 1.09003 * 111.00408 * 277.29660 * 15 4 2 32 32 H 1.09006 * 110.36507 * 81.82971 * 16 15 4 33 33 H 1.09004 * 110.37150 * 204.14947 * 16 15 4 34 34 H 1.09000 * 109.47187 * 300.00179 * 20 18 17 35 35 H 1.09007 * 109.47041 * 59.99641 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2428 5 1 1.3039 -1.4437 -1.6201 6 7 2.4555 0.1960 -2.2874 7 6 2.5064 -0.2091 -3.5946 8 1 2.2514 -1.2257 -3.8553 9 6 2.8856 0.6870 -4.5846 10 7 2.9339 0.2978 -5.8411 11 14 3.3259 2.4456 -4.1338 12 1 4.7798 2.5331 -3.8446 13 1 2.9916 3.3454 -5.2668 14 1 2.5565 2.8559 -2.9319 15 6 3.2868 -1.5179 -0.6957 16 6 2.8159 -1.8832 0.7341 17 7 2.0353 -0.7164 1.1840 18 6 1.8175 -0.3641 2.4665 19 8 1.1572 0.6208 2.7213 20 6 2.3945 -1.1942 3.5843 21 6 2.0023 -0.5808 4.9299 22 9 0.6079 -0.5535 5.0412 23 9 2.5374 -1.3517 5.9675 24 9 2.5022 0.7232 5.0114 25 1 -0.3634 -1.0274 0.0197 26 1 -0.3634 0.5308 0.8800 27 1 -0.3633 0.4968 -0.8997 28 1 2.6886 1.1078 -2.0528 29 1 3.1993 0.9239 -6.5328 30 1 3.4809 -2.4146 -1.2843 31 1 4.1665 -0.8749 -0.6657 32 1 2.1878 -2.7737 0.7106 33 1 3.6741 -2.0404 1.3876 34 1 2.0053 -2.2103 3.5205 35 1 3.4809 -1.2152 3.4977 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986025923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:14 Heat of formation + Delta-G solvation = -194.733275 kcal Electronic energy + Delta-G solvation = -22651.978011 eV Core-core repulsion = 18655.488177 eV Total energy + Delta-G solvation = -3996.489834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.06796 -48.58793 -48.53913 -41.32690 -38.95850 -36.05043 -33.87867 -32.97333 -32.05186 -30.90295 -26.91568 -25.57137 -24.41770 -23.53178 -21.78843 -20.58558 -19.68621 -19.54736 -19.33674 -18.35251 -17.85453 -17.32247 -16.52632 -16.17774 -15.90523 -15.53976 -15.35830 -15.13314 -14.94692 -14.74270 -14.71635 -14.66781 -14.65856 -14.06602 -13.87961 -13.54458 -13.47997 -13.23370 -13.02069 -12.96883 -12.64852 -12.53834 -12.24199 -12.00903 -11.81694 -11.54915 -11.11067 -10.93871 -9.75894 -9.32311 -8.02425 -5.36247 1.38819 1.39629 1.42652 1.44809 1.47502 1.96945 2.47518 2.72906 2.97807 3.07134 3.28330 3.51838 3.55318 3.73793 3.94102 4.11828 4.15931 4.24880 4.33469 4.39998 4.46839 4.64404 4.75972 4.91356 5.01876 5.21645 5.23904 5.27976 5.43742 5.77809 6.21448 6.41771 6.93822 7.06144 7.81384 7.98155 9.18512 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.034141 B = 0.004027 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.930256 B = 6951.630649 C = 7120.821764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.131 3.869 3 H 0.054 0.946 4 C 0.171 3.829 5 H 0.072 0.928 6 N -0.745 5.745 7 C -0.224 4.224 8 H 0.068 0.932 9 C -0.056 4.056 10 N -0.980 5.980 11 Si 0.944 3.056 12 H -0.278 1.278 13 H -0.298 1.298 14 H -0.259 1.259 15 C -0.150 4.150 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.525 3.475 19 O -0.571 6.571 20 C -0.178 4.178 21 C 0.467 3.533 22 F -0.189 7.189 23 F -0.177 7.177 24 F -0.191 7.191 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.363 0.637 29 H 0.257 0.743 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.177 0.823 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 -7.548 22.349 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.027 3.973 3 H 0.073 0.927 4 C 0.062 3.938 5 H 0.090 0.910 6 N -0.388 5.388 7 C -0.355 4.355 8 H 0.086 0.914 9 C -0.248 4.248 10 N -0.630 5.630 11 Si 0.773 3.227 12 H -0.205 1.205 13 H -0.225 1.225 14 H -0.184 1.184 15 C -0.191 4.191 16 C -0.021 4.021 17 N -0.337 5.337 18 C 0.313 3.687 19 O -0.451 6.451 20 C -0.218 4.218 21 C 0.412 3.588 22 F -0.171 7.171 23 F -0.158 7.158 24 F -0.173 7.173 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.196 0.804 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.194 0.806 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.334 -7.133 22.400 23.510 hybrid contribution 0.163 1.520 -0.296 1.558 sum 0.497 -5.613 22.104 22.811 Atomic orbital electron populations 1.21965 0.94155 1.02682 1.01829 1.21725 0.94935 0.95739 0.84950 0.92737 1.21444 0.95545 0.90874 0.85946 0.90963 1.42712 1.82130 1.10616 1.03318 1.18998 1.36668 0.96799 0.83041 0.91421 1.25354 1.02671 1.01750 0.95028 1.69854 1.56395 1.36347 1.00452 0.85574 0.78491 0.81337 0.77337 1.20467 1.22538 1.18420 1.23377 0.98782 1.01465 0.95443 1.22705 0.96366 0.87654 0.95415 1.48542 1.52072 1.29172 1.03885 1.20061 0.80524 0.85078 0.83022 1.90802 1.41681 1.29069 1.83515 1.23032 1.08741 1.03576 0.86424 1.20120 0.74602 0.76281 0.87751 1.93194 1.30851 1.96322 1.96712 1.93210 1.85991 1.74894 1.61726 1.93194 1.87281 1.39936 1.96854 0.91141 0.92768 0.92177 0.80397 0.93374 0.89456 0.91627 0.88228 0.86755 0.80587 0.80960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.11 71.98 0.66 -3.68 16 2 C 0.13 3.90 3.22 45.28 0.15 4.05 16 3 H 0.05 1.88 7.70 -2.39 -0.02 1.86 16 4 C 0.17 5.59 3.12 46.18 0.14 5.73 16 5 H 0.07 2.43 7.81 -2.39 -0.02 2.41 16 6 N -0.75 -32.13 5.04 -317.32 -1.60 -33.73 16 7 C -0.22 -11.90 10.45 84.03 0.88 -11.02 16 8 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 9 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 10 N -0.98 -60.74 13.97 21.65 0.30 -60.43 16 11 Si 0.94 44.55 27.73 68.60 1.90 46.45 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 14 H -0.26 -11.32 6.52 99.48 0.65 -10.67 16 15 C -0.15 -3.75 6.77 31.98 0.22 -3.53 16 16 C 0.10 1.54 6.69 86.85 0.58 2.13 16 17 N -0.60 -13.62 3.08 -787.35 -2.42 -16.04 16 18 C 0.52 12.14 7.42 87.66 0.65 12.79 16 19 O -0.57 -18.74 13.92 -3.05 -0.04 -18.78 16 20 C -0.18 -2.20 4.76 29.85 0.14 -2.06 16 21 C 0.47 8.83 2.89 71.98 0.21 9.04 16 22 F -0.19 -4.53 16.40 44.97 0.74 -3.79 16 23 F -0.18 -2.88 17.32 44.97 0.78 -2.10 16 24 F -0.19 -4.70 16.40 44.97 0.74 -3.97 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.05 1.69 6.94 -2.39 -0.02 1.67 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.36 15.66 5.40 -92.71 -0.50 15.16 16 29 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 30 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.11 0.92 7.48 -2.38 -0.02 0.90 16 34 H 0.18 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.17 0.95 7.85 -2.38 -0.02 0.93 16 Total: -1.00 -72.44 302.91 5.04 -67.40 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.56 Total: 14.26 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 4.09 Total: 10.74 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -3.72 Total: -110.21 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.04 Total: -18.78 kcal Atomic # 9 Polarization: -12.12 SS G_CDS: 2.25 Total: -9.86 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Total: -72.44 5.04 -67.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986025923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.334 kcal (2) G-P(sol) polarization free energy of solvation -72.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds