Wall clock time and date at job start Tue Mar 31 2020 01:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99339 * 2 1 4 4 C 1.54316 * 109.88070 * 238.90724 * 2 1 3 5 5 C 1.55158 * 102.94139 * 218.38775 * 4 2 1 6 6 H 1.08998 * 111.00511 * 277.42784 * 5 4 2 7 7 N 1.46500 * 111.04193 * 153.58939 * 5 4 2 8 8 C 1.36930 * 120.00429 * 161.33020 * 7 5 4 9 9 H 1.07999 * 119.99753 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00185 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00081 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00307 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46832 * 59.99576 * 12 10 8 14 14 H 1.48495 * 109.47251 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46940 * 300.00072 * 12 10 8 16 16 C 1.54917 * 101.57978 * 35.50252 * 5 4 2 17 17 N 1.47020 * 109.88140 * 121.09511 * 2 1 3 18 18 C 1.34776 * 125.65281 * 298.39514 * 17 2 1 19 19 O 1.21285 * 119.99841 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00365 * 179.97438 * 18 17 2 21 21 C 1.52995 * 109.47186 * 180.02562 * 20 18 17 22 22 F 1.39901 * 109.47416 * 59.99629 * 21 20 18 23 23 F 1.39900 * 109.46918 * 179.97438 * 21 20 18 24 24 F 1.39901 * 109.47258 * 299.99351 * 21 20 18 25 25 H 1.08997 * 109.46946 * 181.09875 * 1 2 3 26 26 H 1.09003 * 109.47334 * 301.09521 * 1 2 3 27 27 H 1.08992 * 109.47141 * 61.09302 * 1 2 3 28 28 H 1.09003 * 110.72312 * 100.02612 * 4 2 1 29 29 H 1.08999 * 110.87697 * 336.82051 * 4 2 1 30 30 H 0.97004 * 119.99482 * 341.33243 * 7 5 4 31 31 H 0.97000 * 120.00421 * 180.02562 * 11 10 8 32 32 H 1.08998 * 110.36726 * 81.82993 * 16 5 4 33 33 H 1.09005 * 110.36534 * 204.15515 * 16 5 4 34 34 H 1.09004 * 109.47135 * 299.99842 * 20 18 17 35 35 H 1.08993 * 109.47035 * 59.99497 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2427 5 6 3.2876 -1.5142 -0.6924 6 1 4.1654 -0.8688 -0.6604 7 7 3.5541 -2.7195 -1.4814 8 6 4.7830 -3.3203 -1.4199 9 1 5.5558 -2.9058 -0.7895 10 6 5.0356 -4.4620 -2.1678 11 7 4.0937 -4.9675 -2.9357 12 14 6.7120 -5.2821 -2.0834 13 1 6.9885 -5.7003 -0.6857 14 1 6.7247 -6.4746 -2.9682 15 1 7.7549 -4.3234 -2.5288 16 6 2.8145 -1.8794 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.1436 0.6211 2.7181 20 6 2.3833 -1.1901 3.5854 21 6 1.9842 -0.5781 4.9297 22 9 0.5895 -0.5554 5.0361 23 9 2.5184 -1.3472 5.9691 24 9 2.4796 0.7276 5.0130 25 1 -0.3633 -1.0275 0.0197 26 1 -0.3634 0.5308 0.8800 27 1 -0.3633 0.4967 -0.8996 28 1 2.3529 -0.0459 -2.0201 29 1 1.3065 -1.4458 -1.6211 30 1 2.8599 -3.0919 -2.0473 31 1 4.2701 -5.7655 -3.4581 32 1 2.1886 -2.7714 0.7128 33 1 3.6717 -2.0337 1.3923 34 1 1.9970 -2.2074 3.5208 35 1 3.4699 -1.2082 3.5022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988292453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:44 Heat of formation + Delta-G solvation = -179.721050 kcal Electronic energy + Delta-G solvation = -22592.104516 eV Core-core repulsion = 18596.265661 eV Total energy + Delta-G solvation = -3995.838856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.11100 -47.65278 -47.52440 -40.13287 -37.61063 -34.32214 -32.72150 -31.51554 -30.76217 -28.51239 -25.58406 -24.56858 -23.80923 -21.73042 -20.42064 -19.28290 -18.59143 -18.46240 -17.47978 -17.24382 -16.68643 -16.07562 -15.22241 -14.90855 -14.47471 -14.35156 -14.10911 -13.96299 -13.72779 -13.71717 -13.69143 -13.43421 -13.10882 -12.84485 -12.80534 -12.37832 -12.15448 -12.06878 -11.77727 -11.23145 -11.09325 -10.85431 -10.74019 -10.42699 -10.13848 -9.95574 -9.84221 -9.12268 -8.54854 -7.20172 -5.94212 -3.26074 2.45906 2.49940 3.01223 3.33751 3.39123 3.40052 3.64158 3.97174 3.97531 4.42768 4.56164 4.90594 4.94635 4.99556 5.02727 5.14748 5.39230 5.45362 5.58564 5.68220 5.72318 5.96190 6.00415 6.07570 6.24266 6.33093 6.35174 6.48621 6.72161 7.52607 7.55536 8.04217 8.23036 9.35143 9.87663 10.22409 11.27454 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.004520 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.205340 B = 6193.323404 C = 7220.195052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.173 3.827 6 H 0.066 0.934 7 N -0.711 5.711 8 C -0.254 4.254 9 H 0.072 0.928 10 C -0.005 4.005 11 N -0.928 5.928 12 Si 0.909 3.091 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.067 3.933 17 N -0.603 5.603 18 C 0.532 3.468 19 O -0.534 6.534 20 C -0.193 4.193 21 C 0.473 3.527 22 F -0.175 7.175 23 F -0.184 7.184 24 F -0.174 7.174 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.388 0.612 31 H 0.258 0.742 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 7.684 10.637 13.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.060 3.940 6 H 0.084 0.916 7 N -0.351 5.351 8 C -0.384 4.384 9 H 0.090 0.910 10 C -0.202 4.202 11 N -0.575 5.575 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.059 4.059 17 N -0.336 5.336 18 C 0.318 3.682 19 O -0.412 6.412 20 C -0.234 4.234 21 C 0.419 3.581 22 F -0.156 7.156 23 F -0.166 7.166 24 F -0.156 7.156 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.222 0.778 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.155 0.845 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.960 8.150 10.849 14.447 hybrid contribution 0.721 -0.793 0.087 1.075 sum -4.238 7.357 10.936 13.845 Atomic orbital electron populations 1.22134 0.94889 1.02338 1.02595 1.21557 0.94415 0.96138 0.84196 0.90688 1.23010 0.99031 0.99697 0.95746 1.21277 0.94684 0.89541 0.88469 0.91618 1.42313 1.14101 1.27640 1.51091 1.19182 0.90094 1.06530 1.22636 0.90972 1.24774 0.97944 0.98382 0.99145 1.69643 1.32582 1.24012 1.31292 0.86258 0.83547 0.78869 0.77415 1.21103 1.21583 1.21081 1.23653 0.94478 0.87485 1.00269 1.48526 1.51775 1.29147 1.04160 1.19320 0.81120 0.85121 0.82641 1.90775 1.39975 1.27232 1.83184 1.22957 1.06935 1.03358 0.90132 1.19751 0.75269 0.76649 0.86476 1.93212 1.29489 1.96298 1.96593 1.93194 1.86266 1.75435 1.61674 1.93213 1.87336 1.38317 1.96703 0.92444 0.91515 0.91702 0.90112 0.90193 0.77765 0.93172 0.90767 0.91098 0.84475 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.10 37.16 0.34 -1.73 16 2 C 0.14 1.91 3.46 -66.96 -0.23 1.68 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -1.94 6.10 -24.90 -0.15 -2.10 16 5 C 0.17 2.95 3.68 -65.78 -0.24 2.71 16 6 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 7 N -0.71 -15.78 5.28 -51.35 -0.27 -16.05 16 8 C -0.25 -6.36 9.98 -15.06 -0.15 -6.51 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 11 N -0.93 -26.14 13.06 55.49 0.72 -25.41 16 12 Si 0.91 20.88 29.55 -169.99 -5.02 15.85 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.07 1.00 6.38 -2.53 -0.02 0.98 16 17 N -0.60 -8.49 3.06 -163.02 -0.50 -8.99 16 18 C 0.53 7.58 7.41 -10.99 -0.08 7.50 16 19 O -0.53 -9.15 13.88 5.55 0.08 -9.07 16 20 C -0.19 -2.10 4.76 -27.89 -0.13 -2.24 16 21 C 0.47 5.84 2.89 37.16 0.11 5.94 16 22 F -0.17 -2.43 16.40 2.25 0.04 -2.40 16 23 F -0.18 -2.12 17.32 2.25 0.04 -2.08 16 24 F -0.17 -2.43 16.40 2.25 0.04 -2.40 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.95 6.90 -51.93 -0.36 0.59 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 1.17 7.71 -51.93 -0.40 0.77 16 30 H 0.39 9.23 7.71 -40.82 -0.31 8.91 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.98 7.48 -51.93 -0.39 0.59 16 34 H 0.14 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.14 1.21 7.85 -51.93 -0.41 0.80 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -29.20 306.31 -5.29 -34.50 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -4.37 Total: 5.43 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.66 Total: 6.00 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.05 Total: -50.44 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 0.11 Total: -6.87 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.20 -5.29 -34.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988292453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.224 kcal (2) G-P(sol) polarization free energy of solvation -29.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds