Wall clock time and date at job start Tue Mar 31 2020 01:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.99339 * 2 1 4 4 C 1.54316 * 109.88070 * 238.90724 * 2 1 3 5 5 C 1.55158 * 102.94139 * 218.38775 * 4 2 1 6 6 H 1.08998 * 111.00511 * 277.42784 * 5 4 2 7 7 N 1.46500 * 111.04193 * 153.58939 * 5 4 2 8 8 C 1.36930 * 120.00429 * 161.33020 * 7 5 4 9 9 H 1.07999 * 119.99753 * 0.02562 * 8 7 5 10 10 C 1.38809 * 120.00185 * 180.02562 * 8 7 5 11 11 N 1.31620 * 120.00081 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00307 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46832 * 59.99576 * 12 10 8 14 14 H 1.48495 * 109.47251 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46940 * 300.00072 * 12 10 8 16 16 C 1.54917 * 101.57978 * 35.50252 * 5 4 2 17 17 N 1.47020 * 109.88140 * 121.09511 * 2 1 3 18 18 C 1.34776 * 125.65281 * 298.39514 * 17 2 1 19 19 O 1.21285 * 119.99841 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00365 * 179.97438 * 18 17 2 21 21 C 1.52995 * 109.47186 * 180.02562 * 20 18 17 22 22 F 1.39901 * 109.47416 * 59.99629 * 21 20 18 23 23 F 1.39900 * 109.46918 * 179.97438 * 21 20 18 24 24 F 1.39901 * 109.47258 * 299.99351 * 21 20 18 25 25 H 1.08997 * 109.46946 * 181.09875 * 1 2 3 26 26 H 1.09003 * 109.47334 * 301.09521 * 1 2 3 27 27 H 1.08992 * 109.47141 * 61.09302 * 1 2 3 28 28 H 1.09003 * 110.72312 * 100.02612 * 4 2 1 29 29 H 1.08999 * 110.87697 * 336.82051 * 4 2 1 30 30 H 0.97004 * 119.99482 * 341.33243 * 7 5 4 31 31 H 0.97000 * 120.00421 * 180.02562 * 11 10 8 32 32 H 1.08998 * 110.36726 * 81.82993 * 16 5 4 33 33 H 1.09005 * 110.36534 * 204.15515 * 16 5 4 34 34 H 1.09004 * 109.47135 * 299.99842 * 20 18 17 35 35 H 1.08993 * 109.47035 * 59.99497 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2427 5 6 3.2876 -1.5142 -0.6924 6 1 4.1654 -0.8688 -0.6604 7 7 3.5541 -2.7195 -1.4814 8 6 4.7830 -3.3203 -1.4199 9 1 5.5558 -2.9058 -0.7895 10 6 5.0356 -4.4620 -2.1678 11 7 4.0937 -4.9675 -2.9357 12 14 6.7120 -5.2821 -2.0834 13 1 6.9885 -5.7003 -0.6857 14 1 6.7247 -6.4746 -2.9682 15 1 7.7549 -4.3234 -2.5288 16 6 2.8145 -1.8794 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.1436 0.6211 2.7181 20 6 2.3833 -1.1901 3.5854 21 6 1.9842 -0.5781 4.9297 22 9 0.5895 -0.5554 5.0361 23 9 2.5184 -1.3472 5.9691 24 9 2.4796 0.7276 5.0130 25 1 -0.3633 -1.0275 0.0197 26 1 -0.3634 0.5308 0.8800 27 1 -0.3633 0.4967 -0.8996 28 1 2.3529 -0.0459 -2.0201 29 1 1.3065 -1.4458 -1.6211 30 1 2.8599 -3.0919 -2.0473 31 1 4.2701 -5.7655 -3.4581 32 1 2.1886 -2.7714 0.7128 33 1 3.6717 -2.0337 1.3923 34 1 1.9970 -2.2074 3.5208 35 1 3.4699 -1.2082 3.5022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988292453.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:44 Heat of formation + Delta-G solvation = -197.645327 kcal Electronic energy + Delta-G solvation = -22592.881771 eV Core-core repulsion = 18596.265661 eV Total energy + Delta-G solvation = -3996.616110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.09849 -48.61754 -48.55976 -41.30103 -38.86488 -35.98301 -33.80171 -33.19293 -31.79548 -30.04777 -26.74295 -25.94798 -25.25257 -22.89456 -21.77677 -20.37139 -19.59843 -19.54140 -19.12991 -18.36014 -17.82877 -17.30774 -16.51716 -16.31381 -15.63671 -15.44654 -15.30907 -15.28067 -14.97768 -14.83402 -14.74039 -14.69073 -14.31435 -14.21526 -13.90834 -13.50509 -13.35632 -13.08426 -12.98884 -12.79145 -12.76599 -12.33207 -12.11506 -12.01551 -11.70603 -11.49265 -11.13508 -10.90549 -9.74264 -9.03094 -7.91970 -5.21733 1.40153 1.46580 1.54111 1.54960 1.60834 1.97381 2.58923 2.69923 2.94128 3.03833 3.40012 3.49113 3.80040 3.83449 3.97539 4.10144 4.17968 4.22134 4.33730 4.47623 4.53195 4.73157 4.78162 4.87611 5.08285 5.13757 5.23577 5.36969 5.40820 5.58199 6.28850 6.40296 6.92385 7.37325 8.08942 8.32232 9.30650 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.020078 B = 0.004520 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.205340 B = 6193.323404 C = 7220.195052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.079 0.921 4 C -0.125 4.125 5 C 0.163 3.837 6 H 0.066 0.934 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.082 0.918 10 C -0.068 4.068 11 N -0.967 5.967 12 Si 0.967 3.033 13 H -0.276 1.276 14 H -0.301 1.301 15 H -0.280 1.280 16 C 0.081 3.919 17 N -0.601 5.601 18 C 0.529 3.471 19 O -0.565 6.565 20 C -0.187 4.187 21 C 0.472 3.528 22 F -0.187 7.187 23 F -0.178 7.178 24 F -0.186 7.186 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.377 0.623 31 H 0.251 0.749 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.120 8.018 11.532 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.036 3.964 3 H 0.097 0.903 4 C -0.163 4.163 5 C 0.053 3.947 6 H 0.083 0.917 7 N -0.362 5.362 8 C -0.374 4.374 9 H 0.100 0.900 10 C -0.260 4.260 11 N -0.617 5.617 12 Si 0.796 3.204 13 H -0.202 1.202 14 H -0.228 1.228 15 H -0.206 1.206 16 C -0.045 4.045 17 N -0.334 5.334 18 C 0.317 3.683 19 O -0.445 6.445 20 C -0.227 4.227 21 C 0.418 3.582 22 F -0.168 7.168 23 F -0.159 7.159 24 F -0.167 7.167 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.210 0.790 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.179 0.821 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.300 8.526 11.787 15.170 hybrid contribution 0.479 -0.787 -0.144 0.932 sum -3.820 7.739 11.644 14.494 Atomic orbital electron populations 1.22059 0.94175 1.02113 1.02832 1.21600 0.94963 0.96132 0.83709 0.90333 1.22913 0.97608 0.99494 0.96300 1.21457 0.95922 0.87998 0.89317 0.91650 1.42434 1.13012 1.28940 1.51860 1.19586 0.91112 1.05737 1.20956 0.89990 1.25474 1.00876 0.99732 0.99959 1.69788 1.34347 1.24540 1.33018 0.85319 0.80200 0.77495 0.77358 1.20186 1.22814 1.20631 1.23315 0.94946 0.87300 0.98924 1.48519 1.51611 1.28808 1.04465 1.19809 0.80534 0.84927 0.83060 1.90769 1.41382 1.28747 1.83566 1.23022 1.08430 1.03535 0.87667 1.19947 0.74684 0.76306 0.87296 1.93189 1.30595 1.96328 1.96707 1.93206 1.86074 1.75126 1.61539 1.93190 1.87406 1.39341 1.96811 0.92780 0.92957 0.89843 0.89021 0.90519 0.79024 0.94067 0.91443 0.89462 0.82068 0.81794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.10 71.98 0.65 -3.04 16 2 C 0.14 3.52 3.46 45.34 0.16 3.68 16 3 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.12 -3.34 6.10 31.78 0.19 -3.15 16 5 C 0.16 5.29 3.68 46.39 0.17 5.46 16 6 H 0.07 2.15 8.13 -2.39 -0.02 2.13 16 7 N -0.72 -31.37 5.28 -316.37 -1.67 -33.04 16 8 C -0.24 -11.86 9.98 84.03 0.84 -11.02 16 9 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 10 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16 11 N -0.97 -54.94 13.06 21.65 0.28 -54.66 16 12 Si 0.97 42.56 29.55 68.60 2.03 44.58 16 13 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 15 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 16 C 0.08 2.20 6.38 86.86 0.55 2.76 16 17 N -0.60 -15.61 3.06 -788.05 -2.42 -18.03 16 18 C 0.53 13.99 7.41 87.66 0.65 14.64 16 19 O -0.56 -18.66 13.88 -3.05 -0.04 -18.70 16 20 C -0.19 -3.53 4.76 29.85 0.14 -3.39 16 21 C 0.47 10.76 2.89 71.98 0.21 10.96 16 22 F -0.19 -4.99 16.40 44.97 0.74 -4.25 16 23 F -0.18 -3.71 17.32 44.97 0.78 -2.93 16 24 F -0.19 -4.94 16.40 44.97 0.74 -4.20 16 25 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.05 1.43 6.90 -2.39 -0.02 1.41 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.08 2.14 7.71 -2.39 -0.02 2.12 16 30 H 0.38 17.90 7.71 -92.71 -0.71 17.18 16 31 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 2.12 7.48 -2.38 -0.02 2.10 16 34 H 0.16 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.16 2.26 7.85 -2.39 -0.02 2.24 16 Total: -1.00 -61.86 306.31 4.88 -56.98 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.40 Total: 20.42 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 4.04 Total: 13.83 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -3.80 Total: -105.73 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.04 Total: -18.70 kcal Atomic # 9 Polarization: -13.64 SS G_CDS: 2.25 Total: -11.39 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -61.86 4.88 -56.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988292453.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.662 kcal (2) G-P(sol) polarization free energy of solvation -61.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds