Wall clock time and date at job start Tue Mar 31 2020 01:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00250 * 2 1 4 4 C 1.54323 * 109.88143 * 121.09603 * 2 1 3 5 5 C 1.55158 * 102.94308 * 141.60849 * 4 2 1 6 6 H 1.08999 * 111.04144 * 206.41106 * 5 4 2 7 7 N 1.46504 * 111.00243 * 82.56885 * 5 4 2 8 8 C 1.36943 * 119.99781 * 161.35271 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48501 * 109.46896 * 89.99850 * 12 10 8 14 14 H 1.48499 * 109.47039 * 210.00011 * 12 10 8 15 15 H 1.48501 * 109.47275 * 329.99811 * 12 10 8 16 16 C 1.54915 * 101.58429 * 324.49952 * 5 4 2 17 17 N 1.47030 * 109.88228 * 238.90413 * 2 1 3 18 18 C 1.34772 * 125.64727 * 61.67399 * 17 2 1 19 19 O 1.21283 * 120.00326 * 359.97438 * 18 17 2 20 20 C 1.50699 * 119.99999 * 179.97438 * 18 17 2 21 21 C 1.53001 * 109.47282 * 180.02562 * 20 18 17 22 22 F 1.39902 * 109.46990 * 60.00175 * 21 20 18 23 23 F 1.39897 * 109.47256 * 180.02562 * 21 20 18 24 24 F 1.39900 * 109.47002 * 300.00438 * 21 20 18 25 25 H 1.09003 * 109.47414 * 179.64044 * 1 2 3 26 26 H 1.09000 * 109.46935 * 299.64549 * 1 2 3 27 27 H 1.09000 * 109.47349 * 59.64035 * 1 2 3 28 28 H 1.08998 * 110.72230 * 23.24508 * 4 2 1 29 29 H 1.08994 * 110.72163 * 259.96809 * 4 2 1 30 30 H 0.97000 * 120.00410 * 341.35596 * 7 5 4 31 31 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 32 32 H 1.08995 * 110.37048 * 155.84652 * 16 5 4 33 33 H 1.08998 * 110.36375 * 278.06248 * 16 5 4 34 34 H 1.09000 * 109.47351 * 300.00585 * 20 18 17 35 35 H 1.09005 * 109.46724 * 60.00561 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2876 -1.5143 0.6924 6 1 3.4858 -2.4111 1.2794 7 7 4.4674 -0.6468 0.6493 8 6 5.7189 -1.1967 0.5673 9 1 5.8361 -2.2698 0.5348 10 6 6.8370 -0.3749 0.5323 11 7 6.6942 0.9328 0.5725 12 14 8.5446 -1.1252 0.4282 13 1 8.9273 -1.2886 -0.9973 14 1 9.5198 -0.2317 1.1033 15 1 8.5440 -2.4516 1.0959 16 6 2.8145 -1.8795 -0.7368 17 7 2.0300 -0.7141 -1.1840 18 6 1.8085 -0.3613 -2.4657 19 8 1.1450 0.6221 -2.7181 20 6 2.3851 -1.1888 -3.5854 21 6 1.9883 -0.5752 -4.9297 22 9 2.4848 0.7302 -5.0111 23 9 2.5232 -1.3437 -5.9691 24 9 0.5937 -0.5513 -5.0378 25 1 -0.3634 -1.0277 -0.0064 26 1 -0.3633 0.5083 0.8932 27 1 -0.3634 0.5194 -0.8867 28 1 1.3051 -1.4459 1.6183 29 1 2.3530 -0.0461 2.0200 30 1 4.3621 0.3170 0.6790 31 1 7.4755 1.5071 0.5477 32 1 3.6716 -2.0339 -1.3923 33 1 2.1902 -2.7726 -0.7131 34 1 3.4717 -1.2071 -3.5013 35 1 1.9986 -2.2060 -3.5217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988292456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:46 Heat of formation + Delta-G solvation = -179.228760 kcal Electronic energy + Delta-G solvation = -23014.912839 eV Core-core repulsion = 19019.095331 eV Total energy + Delta-G solvation = -3995.817508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.96892 -47.51823 -47.37098 -39.99962 -37.52866 -34.07939 -32.57508 -31.42936 -30.63307 -28.52382 -25.59354 -24.39068 -23.76762 -21.91548 -20.13216 -19.14760 -18.44401 -18.31848 -17.36595 -17.15197 -16.57529 -15.94377 -15.15972 -14.58451 -14.38977 -14.28890 -14.05439 -13.83376 -13.72267 -13.56953 -13.54842 -13.39747 -13.12565 -12.88103 -12.45139 -12.29675 -11.96873 -11.88375 -11.70645 -11.23873 -11.02527 -10.85427 -10.71761 -10.40194 -10.09019 -9.80859 -9.77585 -9.12648 -8.38567 -7.13141 -5.90156 -3.21594 2.61441 2.70148 3.18885 3.34770 3.40115 3.42635 3.78949 4.12852 4.13561 4.46162 4.68104 5.00370 5.05509 5.06740 5.20198 5.24556 5.42548 5.50461 5.59094 5.70786 5.79682 5.89823 6.08016 6.13733 6.32781 6.34046 6.47480 6.60115 6.66244 7.56221 7.72169 8.23739 8.26815 9.38769 9.93305 10.27549 11.31509 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.005923 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.529370 B = 4726.022849 C = 5894.363790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.077 0.923 4 C -0.137 4.137 5 C 0.169 3.831 6 H 0.073 0.927 7 N -0.712 5.712 8 C -0.252 4.252 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.926 5.926 12 Si 0.907 3.093 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.063 3.937 17 N -0.592 5.592 18 C 0.535 3.465 19 O -0.535 6.535 20 C -0.192 4.192 21 C 0.473 3.527 22 F -0.172 7.172 23 F -0.186 7.186 24 F -0.177 7.177 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.386 0.614 31 H 0.257 0.743 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.140 0.860 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.107 -6.737 -4.821 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.037 3.963 3 H 0.095 0.905 4 C -0.176 4.176 5 C 0.057 3.943 6 H 0.090 0.910 7 N -0.352 5.352 8 C -0.383 4.383 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.573 5.573 12 Si 0.738 3.262 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.063 4.063 17 N -0.324 5.324 18 C 0.321 3.679 19 O -0.413 6.413 20 C -0.233 4.233 21 C 0.418 3.582 22 F -0.153 7.153 23 F -0.167 7.167 24 F -0.158 7.158 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.104 0.896 30 H 0.220 0.780 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.297 -6.256 -5.035 13.860 hybrid contribution 1.061 -0.063 -0.363 1.123 sum -10.236 -6.320 -5.398 13.185 Atomic orbital electron populations 1.22138 0.95213 1.01814 1.02657 1.21521 0.93660 0.96823 0.84315 0.90535 1.23045 0.98126 1.00037 0.96378 1.21323 0.87064 0.94532 0.91429 0.90966 1.42355 1.00238 1.05242 1.87408 1.19205 0.83293 0.91825 1.43966 0.90915 1.24781 0.98021 0.95319 1.02257 1.69658 1.29243 1.02037 1.56376 0.86207 0.84372 0.78029 0.77618 1.21625 1.21695 1.20630 1.23507 0.94403 0.86784 1.01593 1.48274 1.51317 1.28714 1.04100 1.19226 0.80972 0.85086 0.82591 1.90766 1.40287 1.27070 1.83149 1.22939 1.07303 1.02840 0.90174 1.19761 0.75088 0.76851 0.86458 1.93233 1.87246 1.38138 1.96674 1.93182 1.86266 1.75515 1.61748 1.93197 1.29663 1.96337 1.96606 0.92814 0.91859 0.91494 0.90582 0.89638 0.77964 0.93264 0.90082 0.92270 0.84167 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.10 37.16 0.34 -1.77 16 2 C 0.14 2.13 3.45 -66.95 -0.23 1.90 16 3 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.14 -1.93 6.05 -24.90 -0.15 -2.09 16 5 C 0.17 2.84 3.69 -65.78 -0.24 2.59 16 6 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 7 N -0.71 -16.04 5.27 -51.34 -0.27 -16.31 16 8 C -0.25 -6.37 9.98 -15.06 -0.15 -6.52 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 11 N -0.93 -26.81 13.06 55.49 0.72 -26.09 16 12 Si 0.91 21.21 29.55 -169.99 -5.02 16.18 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 C 0.06 0.93 6.39 -2.52 -0.02 0.91 16 17 N -0.59 -9.29 3.06 -163.01 -0.50 -9.79 16 18 C 0.53 8.78 7.41 -10.99 -0.08 8.70 16 19 O -0.53 -10.39 13.87 5.55 0.08 -10.32 16 20 C -0.19 -2.46 4.76 -27.88 -0.13 -2.59 16 21 C 0.47 6.71 2.89 37.16 0.11 6.81 16 22 F -0.17 -2.87 16.40 2.25 0.04 -2.84 16 23 F -0.19 -2.42 17.32 2.25 0.04 -2.38 16 24 F -0.18 -2.67 16.40 2.25 0.04 -2.63 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.01 6.88 -51.93 -0.36 0.65 16 28 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.39 9.62 7.82 -40.82 -0.32 9.30 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.08 1.27 7.47 -51.93 -0.39 0.88 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.14 1.70 7.85 -51.93 -0.41 1.30 16 35 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 306.46 15.07 4.62 4.62 Total: -1.00 -30.42 306.46 -5.30 -35.72 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.38 Total: 6.14 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.65 Total: 7.68 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.05 Total: -52.19 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 0.11 Total: -7.84 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.42 -5.30 -35.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988292456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.507 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds