Wall clock time and date at job start Tue Mar 31 2020 01:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00250 * 2 1 4 4 C 1.54323 * 109.88143 * 121.09603 * 2 1 3 5 5 C 1.55158 * 102.94308 * 141.60849 * 4 2 1 6 6 H 1.08999 * 111.04144 * 206.41106 * 5 4 2 7 7 N 1.46504 * 111.00243 * 82.56885 * 5 4 2 8 8 C 1.36943 * 119.99781 * 161.35271 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48501 * 109.46896 * 89.99850 * 12 10 8 14 14 H 1.48499 * 109.47039 * 210.00011 * 12 10 8 15 15 H 1.48501 * 109.47275 * 329.99811 * 12 10 8 16 16 C 1.54915 * 101.58429 * 324.49952 * 5 4 2 17 17 N 1.47030 * 109.88228 * 238.90413 * 2 1 3 18 18 C 1.34772 * 125.64727 * 61.67399 * 17 2 1 19 19 O 1.21283 * 120.00326 * 359.97438 * 18 17 2 20 20 C 1.50699 * 119.99999 * 179.97438 * 18 17 2 21 21 C 1.53001 * 109.47282 * 180.02562 * 20 18 17 22 22 F 1.39902 * 109.46990 * 60.00175 * 21 20 18 23 23 F 1.39897 * 109.47256 * 180.02562 * 21 20 18 24 24 F 1.39900 * 109.47002 * 300.00438 * 21 20 18 25 25 H 1.09003 * 109.47414 * 179.64044 * 1 2 3 26 26 H 1.09000 * 109.46935 * 299.64549 * 1 2 3 27 27 H 1.09000 * 109.47349 * 59.64035 * 1 2 3 28 28 H 1.08998 * 110.72230 * 23.24508 * 4 2 1 29 29 H 1.08994 * 110.72163 * 259.96809 * 4 2 1 30 30 H 0.97000 * 120.00410 * 341.35596 * 7 5 4 31 31 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 32 32 H 1.08995 * 110.37048 * 155.84652 * 16 5 4 33 33 H 1.08998 * 110.36375 * 278.06248 * 16 5 4 34 34 H 1.09000 * 109.47351 * 300.00585 * 20 18 17 35 35 H 1.09005 * 109.46724 * 60.00561 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2427 5 6 3.2876 -1.5143 0.6924 6 1 3.4858 -2.4111 1.2794 7 7 4.4674 -0.6468 0.6493 8 6 5.7189 -1.1967 0.5673 9 1 5.8361 -2.2698 0.5348 10 6 6.8370 -0.3749 0.5323 11 7 6.6942 0.9328 0.5725 12 14 8.5446 -1.1252 0.4282 13 1 8.9273 -1.2886 -0.9973 14 1 9.5198 -0.2317 1.1033 15 1 8.5440 -2.4516 1.0959 16 6 2.8145 -1.8795 -0.7368 17 7 2.0300 -0.7141 -1.1840 18 6 1.8085 -0.3613 -2.4657 19 8 1.1450 0.6221 -2.7181 20 6 2.3851 -1.1888 -3.5854 21 6 1.9883 -0.5752 -4.9297 22 9 2.4848 0.7302 -5.0111 23 9 2.5232 -1.3437 -5.9691 24 9 0.5937 -0.5513 -5.0378 25 1 -0.3634 -1.0277 -0.0064 26 1 -0.3633 0.5083 0.8932 27 1 -0.3634 0.5194 -0.8867 28 1 1.3051 -1.4459 1.6183 29 1 2.3530 -0.0461 2.0200 30 1 4.3621 0.3170 0.6790 31 1 7.4755 1.5071 0.5477 32 1 3.6716 -2.0339 -1.3923 33 1 2.1902 -2.7726 -0.7131 34 1 3.4717 -1.2071 -3.5013 35 1 1.9986 -2.2060 -3.5217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988292456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:45 Heat of formation + Delta-G solvation = -198.974522 kcal Electronic energy + Delta-G solvation = -23015.769080 eV Core-core repulsion = 19019.095331 eV Total energy + Delta-G solvation = -3996.673749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.11242 -48.63166 -48.57334 -41.25566 -38.85856 -35.78897 -33.76368 -33.10675 -31.75244 -30.09589 -26.74527 -25.79187 -25.37778 -23.14587 -21.45473 -20.33990 -19.59577 -19.51666 -19.17923 -18.34784 -17.80818 -17.25030 -16.56933 -16.09786 -15.69012 -15.47685 -15.35322 -15.22489 -14.99624 -14.85056 -14.75657 -14.71033 -14.52569 -14.08355 -13.59940 -13.44526 -13.22767 -13.09464 -13.00639 -12.84776 -12.66984 -12.25095 -12.19071 -12.01322 -11.61812 -11.47682 -11.10992 -10.92837 -9.69279 -8.96108 -7.91538 -5.20326 1.43854 1.51011 1.51477 1.52497 1.59755 2.03209 2.58513 2.69463 2.99743 3.03275 3.40477 3.55239 3.84972 3.89073 3.95919 4.09988 4.16079 4.21550 4.39718 4.50348 4.71742 4.79601 4.82671 4.96745 5.12582 5.21034 5.24857 5.36934 5.47506 5.58923 6.29482 6.49562 6.99413 7.36391 8.12063 8.33070 9.31849 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.005923 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.529370 B = 4726.022849 C = 5894.363790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.134 3.866 3 H 0.039 0.961 4 C -0.122 4.122 5 C 0.155 3.845 6 H 0.089 0.911 7 N -0.728 5.728 8 C -0.232 4.232 9 H 0.089 0.911 10 C -0.076 4.076 11 N -0.972 5.972 12 Si 0.967 3.033 13 H -0.291 1.291 14 H -0.305 1.305 15 H -0.263 1.263 16 C 0.071 3.929 17 N -0.594 5.594 18 C 0.524 3.476 19 O -0.574 6.574 20 C -0.182 4.182 21 C 0.471 3.529 22 F -0.192 7.192 23 F -0.177 7.177 24 F -0.183 7.183 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.041 0.959 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.369 0.631 31 H 0.247 0.753 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.149 0.851 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.023 -9.714 -4.557 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.031 3.969 3 H 0.058 0.942 4 C -0.160 4.160 5 C 0.045 3.955 6 H 0.107 0.893 7 N -0.367 5.367 8 C -0.364 4.364 9 H 0.107 0.893 10 C -0.269 4.269 11 N -0.623 5.623 12 Si 0.797 3.203 13 H -0.219 1.219 14 H -0.233 1.233 15 H -0.188 1.188 16 C -0.053 4.053 17 N -0.326 5.326 18 C 0.312 3.688 19 O -0.454 6.454 20 C -0.222 4.222 21 C 0.417 3.583 22 F -0.174 7.174 23 F -0.158 7.158 24 F -0.164 7.164 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.133 0.867 29 H 0.092 0.908 30 H 0.200 0.800 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.166 0.834 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.247 -9.317 -4.763 16.109 hybrid contribution 1.240 0.815 -0.430 1.545 sum -11.007 -8.502 -5.193 14.846 Atomic orbital electron populations 1.22027 0.93281 1.02947 1.02335 1.21563 0.95145 0.95262 0.84928 0.94228 1.22978 0.97677 1.00036 0.95327 1.21683 0.86055 0.94486 0.93291 0.89339 1.42581 1.01362 1.05095 1.87615 1.19677 0.84275 0.92410 1.40046 0.89342 1.25522 1.01528 0.95661 1.04148 1.69828 1.29273 1.03433 1.59739 0.85235 0.80298 0.77608 0.77179 1.21870 1.23253 1.18779 1.23457 0.94915 0.87725 0.99236 1.48404 1.51062 1.28989 1.04100 1.19831 0.80575 0.84969 0.83446 1.90750 1.42119 1.28813 1.83766 1.22974 1.07609 1.03978 0.87635 1.19975 0.74748 0.76190 0.87391 1.93194 1.87488 1.39844 1.96827 1.93197 1.86082 1.75052 1.61508 1.93182 1.30244 1.96318 1.96697 0.90769 0.90132 0.93934 0.86674 0.90757 0.79959 0.94407 0.90886 0.87710 0.83357 0.80778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.10 71.98 0.66 -2.94 16 2 C 0.13 3.92 3.45 45.34 0.16 4.08 16 3 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.12 -3.11 6.05 31.78 0.19 -2.92 16 5 C 0.15 4.75 3.69 46.38 0.17 4.92 16 6 H 0.09 2.49 8.13 -2.39 -0.02 2.47 16 7 N -0.73 -32.17 5.27 -316.35 -1.67 -33.84 16 8 C -0.23 -11.46 9.98 84.03 0.84 -10.62 16 9 H 0.09 4.01 7.83 -2.91 -0.02 3.99 16 10 C -0.08 -4.13 5.50 84.86 0.47 -3.66 16 11 N -0.97 -57.82 13.06 21.65 0.28 -57.54 16 12 Si 0.97 43.68 29.55 68.60 2.03 45.71 16 13 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 14 H -0.31 -14.37 7.11 99.48 0.71 -13.66 16 15 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 16 C 0.07 1.83 6.39 86.86 0.55 2.38 16 17 N -0.59 -17.50 3.06 -788.04 -2.42 -19.91 16 18 C 0.52 16.59 7.41 87.66 0.65 17.24 16 19 O -0.57 -22.46 13.87 -3.04 -0.04 -22.50 16 20 C -0.18 -4.24 4.76 29.85 0.14 -4.10 16 21 C 0.47 12.80 2.89 71.98 0.21 13.01 16 22 F -0.19 -6.46 16.40 44.97 0.74 -5.73 16 23 F -0.18 -4.29 17.32 44.97 0.78 -3.51 16 24 F -0.18 -5.35 16.40 44.97 0.74 -4.61 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.04 1.25 6.88 -2.39 -0.02 1.24 16 28 H 0.11 2.09 7.85 -2.39 -0.02 2.07 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.37 18.71 7.82 -92.71 -0.72 17.98 16 31 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.07 2.03 7.47 -2.39 -0.02 2.01 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.15 3.27 7.85 -2.39 -0.02 3.25 16 35 H 0.17 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -67.99 306.46 4.87 -63.12 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.39 Total: 21.42 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 4.04 Total: 17.39 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -3.80 Total: -111.29 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.04 Total: -22.50 kcal Atomic # 9 Polarization: -16.10 SS G_CDS: 2.25 Total: -13.85 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -67.99 4.87 -63.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988292456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.855 kcal (2) G-P(sol) polarization free energy of solvation -67.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds