Wall clock time and date at job start Tue Mar 31 2020 02:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21279 * 120.00483 * 2 1 4 4 N 1.34778 * 119.99394 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.62890 * 174.52987 * 4 2 1 6 6 C 1.53185 * 108.77916 * 126.41238 * 5 4 2 7 7 C 1.53106 * 109.32891 * 54.63490 * 6 5 4 8 8 H 1.09009 * 109.44957 * 58.65256 * 7 6 5 9 9 C 1.52999 * 109.50786 * 178.63280 * 7 6 5 10 10 F 1.39902 * 109.47452 * 180.02562 * 9 7 6 11 11 F 1.39907 * 109.47007 * 300.05537 * 9 7 6 12 12 F 1.39898 * 109.47341 * 60.05117 * 9 7 6 13 13 C 1.53041 * 109.50481 * 298.66130 * 7 6 5 14 14 H 1.09000 * 109.49643 * 181.31170 * 13 7 6 15 15 N 1.46493 * 109.49720 * 301.37686 * 13 7 6 16 16 C 1.36935 * 120.00163 * 204.93689 * 15 13 7 17 17 H 1.08000 * 120.00035 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00147 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00037 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00346 * 179.72375 * 18 16 15 21 21 H 1.48497 * 109.47377 * 180.27057 * 20 18 16 22 22 H 1.48503 * 109.46987 * 300.27400 * 20 18 16 23 23 H 1.48503 * 109.47138 * 60.26763 * 20 18 16 24 24 C 1.46923 * 120.63400 * 354.55606 * 4 2 1 25 25 H 1.09004 * 109.47199 * 274.67066 * 1 2 3 26 26 H 1.09001 * 109.46913 * 34.66557 * 1 2 3 27 27 H 1.08994 * 109.47681 * 154.66706 * 1 2 3 28 28 H 1.08999 * 109.59152 * 246.20915 * 5 4 2 29 29 H 1.09008 * 109.58599 * 6.48644 * 5 4 2 30 30 H 1.08998 * 109.50305 * 174.58720 * 6 5 4 31 31 H 1.09007 * 109.50128 * 294.65632 * 6 5 4 32 32 H 0.97009 * 120.00324 * 24.93337 * 15 13 7 33 33 H 0.96998 * 119.99738 * 359.72481 * 19 18 16 34 34 H 1.08997 * 109.58689 * 113.79781 * 24 4 2 35 35 H 1.09004 * 109.70337 * 353.44015 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6450 -1.1865 -0.1200 6 6 4.2250 -1.9966 1.0436 7 6 3.5780 -3.3841 1.0672 8 1 3.7635 -3.8873 0.1182 9 6 4.1791 -4.2087 2.2072 10 9 3.5878 -5.4765 2.2278 11 9 5.5581 -4.3398 2.0111 12 9 3.9406 -3.5637 3.4255 13 6 2.0695 -3.2408 1.2820 14 1 1.6123 -4.2295 1.3221 15 7 1.8197 -2.5351 2.5412 16 6 0.6367 -2.7186 3.2059 17 1 -0.1124 -3.3833 2.8016 18 6 0.3997 -2.0495 4.3988 19 7 1.3125 -1.2391 4.8913 20 14 -1.2172 -2.2939 5.3017 21 1 -1.2245 -1.4686 6.5362 22 1 -2.3416 -1.8813 4.4237 23 1 -1.3710 -3.7261 5.6628 24 6 1.4651 -2.4447 0.1210 25 1 -0.3634 0.0837 1.0243 26 1 -0.3633 0.8453 -0.5845 27 1 -0.3634 -0.9288 -0.4397 28 1 3.9279 -1.6502 -1.0650 29 1 4.0280 -0.1665 -0.0845 30 1 5.3022 -2.0999 0.9137 31 1 4.0193 -1.4830 1.9828 32 1 2.4924 -1.9378 2.9042 33 1 2.1522 -1.1124 4.4226 34 1 1.5702 -3.0111 -0.8043 35 1 0.4093 -2.2574 0.3169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998207833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:56 Heat of formation + Delta-G solvation = -172.054930 kcal Electronic energy + Delta-G solvation = -24209.160760 eV Core-core repulsion = 20213.654332 eV Total energy + Delta-G solvation = -3995.506428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.65830 -47.22563 -46.99598 -39.91265 -37.57575 -34.28921 -33.18035 -31.52014 -29.56755 -28.31825 -26.60131 -23.87138 -23.16227 -22.56468 -20.35194 -18.87113 -17.92554 -17.83043 -17.37924 -17.25975 -16.24701 -15.83414 -15.18109 -14.93311 -14.31939 -14.05161 -13.77238 -13.62347 -13.57733 -13.37540 -13.27441 -13.18895 -13.06096 -12.94202 -12.64907 -12.44069 -12.07349 -11.77682 -11.58647 -11.18094 -10.85868 -10.70565 -10.58838 -10.41854 -10.03105 -9.47052 -9.24789 -9.13280 -8.35577 -7.12214 -6.14889 -3.17857 2.98602 3.14654 3.37040 3.47399 3.50914 3.68715 4.14983 4.26072 4.41712 4.61499 4.86936 5.02834 5.13695 5.17490 5.24782 5.32480 5.41522 5.54003 5.61583 5.66414 5.75297 5.85155 5.88106 5.93338 6.08664 6.17413 6.30646 6.34242 6.81506 7.70315 7.72697 8.53479 8.69585 9.11542 9.98915 10.11308 11.32150 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.010366 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.100946 B = 2700.406774 C = 4262.415528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.525 3.475 3 O -0.562 6.562 4 N -0.601 5.601 5 C 0.120 3.880 6 C -0.132 4.132 7 C -0.141 4.141 8 H 0.109 0.891 9 C 0.457 3.543 10 F -0.186 7.186 11 F -0.197 7.197 12 F -0.160 7.160 13 C 0.169 3.831 14 H 0.074 0.926 15 N -0.722 5.722 16 C -0.340 4.340 17 H 0.066 0.934 18 C -0.036 4.036 19 N -0.934 5.934 20 Si 1.077 2.923 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.295 1.295 24 C 0.088 3.912 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.373 0.627 33 H 0.256 0.744 34 H 0.057 0.943 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.045 -5.117 -11.677 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.315 3.685 3 O -0.441 6.441 4 N -0.335 5.335 5 C -0.003 4.003 6 C -0.170 4.170 7 C -0.161 4.161 8 H 0.127 0.873 9 C 0.403 3.597 10 F -0.168 7.168 11 F -0.179 7.179 12 F -0.141 7.141 13 C 0.057 3.943 14 H 0.092 0.908 15 N -0.367 5.367 16 C -0.471 4.471 17 H 0.084 0.916 18 C -0.235 4.235 19 N -0.577 5.577 20 Si 0.908 3.092 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.223 1.223 24 C -0.038 4.038 25 H 0.120 0.880 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.209 0.791 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.314 -4.270 -10.328 11.412 hybrid contribution 1.187 -0.699 -1.001 1.703 sum 3.500 -4.969 -11.329 12.857 Atomic orbital electron populations 1.21896 0.91973 1.03590 1.05559 1.20700 0.90650 0.82773 0.74341 1.90649 1.70848 1.31321 1.51305 1.47922 1.06471 1.06629 1.72429 1.21397 0.80566 1.01771 0.96596 1.21944 0.99906 0.93671 1.01524 1.22794 0.99965 0.96993 0.96367 0.87293 1.20446 0.75176 0.78771 0.85295 1.93141 1.83818 1.42955 1.96879 1.93125 1.33300 1.96146 1.95286 1.93277 1.93750 1.80715 1.46393 1.20506 0.88761 0.96578 0.88446 0.90787 1.42517 1.19722 1.53095 1.21350 1.19921 0.94460 1.26563 1.06109 0.91635 1.25713 1.05120 0.97039 0.95591 1.70865 1.07642 1.37927 1.41295 0.83289 0.74040 0.75558 0.76318 1.21097 1.22229 1.22255 1.22642 0.98571 0.84367 0.98223 0.87985 0.89780 0.90342 0.91665 0.88696 0.90051 0.89726 0.79086 0.93238 0.92501 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.47 36.01 0.34 -2.21 16 2 C 0.53 9.47 7.80 -10.98 -0.09 9.39 16 3 O -0.56 -12.02 16.52 5.56 0.09 -11.93 16 4 N -0.60 -9.57 2.89 -172.77 -0.50 -10.07 16 5 C 0.12 1.69 6.44 -3.71 -0.02 1.66 16 6 C -0.13 -1.92 4.95 -26.58 -0.13 -2.05 16 7 C -0.14 -2.06 2.02 -90.54 -0.18 -2.24 16 8 H 0.11 1.25 8.14 -51.92 -0.42 0.82 16 9 C 0.46 7.71 2.69 37.16 0.10 7.81 16 10 F -0.19 -3.24 16.77 2.25 0.04 -3.20 16 11 F -0.20 -3.06 16.78 2.25 0.04 -3.03 16 12 F -0.16 -3.35 14.41 2.25 0.03 -3.31 16 13 C 0.17 2.90 2.45 -67.81 -0.17 2.73 16 14 H 0.07 1.29 7.70 -51.93 -0.40 0.89 16 15 N -0.72 -16.19 3.68 -53.31 -0.20 -16.39 16 16 C -0.34 -8.71 9.93 -15.06 -0.15 -8.86 16 17 H 0.07 1.63 7.83 -52.49 -0.41 1.22 16 18 C -0.04 -0.98 5.50 -17.43 -0.10 -1.08 16 19 N -0.93 -28.18 13.70 55.49 0.76 -27.42 16 20 Si 1.08 25.00 29.92 -169.99 -5.09 19.92 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 24 C 0.09 1.29 5.75 -3.71 -0.02 1.27 16 25 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.08 0.98 6.20 -51.93 -0.32 0.66 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.46 7.00 -51.92 -0.36 1.10 16 30 H 0.08 1.00 7.77 -51.93 -0.40 0.60 16 31 H 0.08 1.52 6.12 -51.92 -0.32 1.20 16 32 H 0.37 9.09 3.78 -40.82 -0.15 8.93 16 33 H 0.26 7.76 6.77 -40.82 -0.28 7.49 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.10 1.50 5.64 -51.93 -0.29 1.21 16 LS Contribution 292.48 15.07 4.41 4.41 Total: -1.00 -31.99 292.48 -4.68 -36.67 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -3.85 Total: 7.92 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -0.42 Total: 6.43 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.06 Total: -53.87 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 9 Polarization: -9.65 SS G_CDS: 0.11 Total: -9.54 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.09 Total: 19.92 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.99 -4.68 -36.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998207833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.387 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds