Wall clock time and date at job start Tue Mar 31 2020 02:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21279 * 120.00483 * 2 1 4 4 N 1.34778 * 119.99394 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.62890 * 174.52987 * 4 2 1 6 6 C 1.53185 * 108.77916 * 126.41238 * 5 4 2 7 7 C 1.53106 * 109.32891 * 54.63490 * 6 5 4 8 8 H 1.09009 * 109.44957 * 58.65256 * 7 6 5 9 9 C 1.52999 * 109.50786 * 178.63280 * 7 6 5 10 10 F 1.39902 * 109.47452 * 180.02562 * 9 7 6 11 11 F 1.39907 * 109.47007 * 300.05537 * 9 7 6 12 12 F 1.39898 * 109.47341 * 60.05117 * 9 7 6 13 13 C 1.53041 * 109.50481 * 298.66130 * 7 6 5 14 14 H 1.09000 * 109.49643 * 181.31170 * 13 7 6 15 15 N 1.46493 * 109.49720 * 301.37686 * 13 7 6 16 16 C 1.36935 * 120.00163 * 204.93689 * 15 13 7 17 17 H 1.08000 * 120.00035 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00147 * 180.02562 * 16 15 13 19 19 N 1.31622 * 120.00037 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00346 * 179.72375 * 18 16 15 21 21 H 1.48497 * 109.47377 * 180.27057 * 20 18 16 22 22 H 1.48503 * 109.46987 * 300.27400 * 20 18 16 23 23 H 1.48503 * 109.47138 * 60.26763 * 20 18 16 24 24 C 1.46923 * 120.63400 * 354.55606 * 4 2 1 25 25 H 1.09004 * 109.47199 * 274.67066 * 1 2 3 26 26 H 1.09001 * 109.46913 * 34.66557 * 1 2 3 27 27 H 1.08994 * 109.47681 * 154.66706 * 1 2 3 28 28 H 1.08999 * 109.59152 * 246.20915 * 5 4 2 29 29 H 1.09008 * 109.58599 * 6.48644 * 5 4 2 30 30 H 1.08998 * 109.50305 * 174.58720 * 6 5 4 31 31 H 1.09007 * 109.50128 * 294.65632 * 6 5 4 32 32 H 0.97009 * 120.00324 * 24.93337 * 15 13 7 33 33 H 0.96998 * 119.99738 * 359.72481 * 19 18 16 34 34 H 1.08997 * 109.58689 * 113.79781 * 24 4 2 35 35 H 1.09004 * 109.70337 * 353.44015 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.6450 -1.1865 -0.1200 6 6 4.2250 -1.9966 1.0436 7 6 3.5780 -3.3841 1.0672 8 1 3.7635 -3.8873 0.1182 9 6 4.1791 -4.2087 2.2072 10 9 3.5878 -5.4765 2.2278 11 9 5.5581 -4.3398 2.0111 12 9 3.9406 -3.5637 3.4255 13 6 2.0695 -3.2408 1.2820 14 1 1.6123 -4.2295 1.3221 15 7 1.8197 -2.5351 2.5412 16 6 0.6367 -2.7186 3.2059 17 1 -0.1124 -3.3833 2.8016 18 6 0.3997 -2.0495 4.3988 19 7 1.3125 -1.2391 4.8913 20 14 -1.2172 -2.2939 5.3017 21 1 -1.2245 -1.4686 6.5362 22 1 -2.3416 -1.8813 4.4237 23 1 -1.3710 -3.7261 5.6628 24 6 1.4651 -2.4447 0.1210 25 1 -0.3634 0.0837 1.0243 26 1 -0.3633 0.8453 -0.5845 27 1 -0.3634 -0.9288 -0.4397 28 1 3.9279 -1.6502 -1.0650 29 1 4.0280 -0.1665 -0.0845 30 1 5.3022 -2.0999 0.9137 31 1 4.0193 -1.4830 1.9828 32 1 2.4924 -1.9378 2.9042 33 1 2.1522 -1.1124 4.4226 34 1 1.5702 -3.0111 -0.8043 35 1 0.4093 -2.2574 0.3169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998207833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:55 Heat of formation + Delta-G solvation = -193.225502 kcal Electronic energy + Delta-G solvation = -24210.078785 eV Core-core repulsion = 20213.654332 eV Total energy + Delta-G solvation = -3996.424453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.02947 -48.54634 -48.46461 -41.23092 -38.99798 -35.99921 -34.56250 -33.06177 -30.96346 -29.80260 -27.90673 -25.72819 -24.41996 -23.96869 -21.69806 -20.28222 -19.28427 -19.21182 -19.08357 -18.66389 -17.59988 -17.27855 -16.54760 -16.40351 -15.83404 -15.45356 -15.42127 -15.17878 -14.93562 -14.72119 -14.66197 -14.65384 -14.42836 -14.23633 -13.90630 -13.74424 -13.47496 -13.07731 -12.90175 -12.60924 -12.54442 -12.14497 -12.02033 -11.87115 -11.78551 -11.19625 -11.01984 -10.80430 -9.74261 -8.97067 -8.28044 -5.22865 1.60090 1.61255 1.69785 1.84500 1.84581 2.15181 2.74168 2.86736 2.98784 3.13584 3.48957 3.61700 3.78522 3.83951 3.87669 4.00209 4.16691 4.23228 4.42272 4.51857 4.60464 4.62289 4.69334 4.75523 4.83253 4.88485 5.10141 5.10906 5.59056 5.69377 6.42750 6.56446 7.14778 7.19224 8.05367 8.17842 9.22410 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.010366 C = 0.006567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.100946 B = 2700.406774 C = 4262.415528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.511 3.489 3 O -0.607 6.607 4 N -0.600 5.600 5 C 0.119 3.881 6 C -0.126 4.126 7 C -0.129 4.129 8 H 0.159 0.841 9 C 0.452 3.548 10 F -0.190 7.190 11 F -0.188 7.188 12 F -0.191 7.191 13 C 0.158 3.842 14 H 0.078 0.922 15 N -0.736 5.736 16 C -0.314 4.314 17 H 0.077 0.923 18 C -0.104 4.104 19 N -0.978 5.978 20 Si 1.120 2.880 21 H -0.306 1.306 22 H -0.272 1.272 23 H -0.282 1.282 24 C 0.093 3.907 25 H 0.078 0.922 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.361 0.639 33 H 0.239 0.761 34 H 0.109 0.891 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.559 -7.028 -14.418 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.302 3.698 3 O -0.489 6.489 4 N -0.331 5.331 5 C -0.004 4.004 6 C -0.164 4.164 7 C -0.149 4.149 8 H 0.177 0.823 9 C 0.398 3.602 10 F -0.171 7.171 11 F -0.170 7.170 12 F -0.172 7.172 13 C 0.049 3.951 14 H 0.096 0.904 15 N -0.379 5.379 16 C -0.446 4.446 17 H 0.095 0.905 18 C -0.295 4.295 19 N -0.627 5.627 20 Si 0.946 3.054 21 H -0.233 1.233 22 H -0.198 1.198 23 H -0.208 1.208 24 C -0.031 4.031 25 H 0.096 0.904 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.195 0.805 33 H 0.049 0.951 34 H 0.127 0.873 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.824 -6.257 -13.140 14.668 hybrid contribution 1.424 -0.224 -0.228 1.459 sum 3.247 -6.482 -13.368 15.208 Atomic orbital electron populations 1.21873 0.89979 1.05959 1.04542 1.21280 0.91901 0.82773 0.73862 1.90623 1.71903 1.32930 1.53483 1.48062 1.07393 1.06538 1.71137 1.21566 0.79426 1.01152 0.98224 1.21888 1.01613 0.93251 0.99691 1.22842 0.97704 0.96930 0.97377 0.82319 1.20851 0.75725 0.78757 0.84860 1.93133 1.83926 1.43196 1.96847 1.93139 1.32630 1.96099 1.95106 1.93229 1.94018 1.81365 1.48628 1.20840 0.90858 0.96381 0.87067 0.90382 1.42694 1.18475 1.53473 1.23281 1.20288 0.95177 1.24016 1.05097 0.90519 1.26910 1.07252 0.97776 0.97610 1.70986 1.08037 1.41182 1.42474 0.82723 0.71960 0.75754 0.74943 1.23258 1.19766 1.20814 1.22641 0.97747 0.83621 0.99120 0.90351 0.88232 0.87422 0.87149 0.90605 0.87491 0.94083 0.80501 0.95071 0.87302 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.68 9.47 71.24 0.67 -4.00 16 2 C 0.51 17.96 7.80 87.66 0.68 18.65 16 3 O -0.61 -26.24 16.52 -3.03 -0.05 -26.29 16 4 N -0.60 -17.60 2.89 -818.91 -2.37 -19.97 16 5 C 0.12 3.02 6.44 86.36 0.56 3.58 16 6 C -0.13 -3.41 4.95 30.69 0.15 -3.26 16 7 C -0.13 -3.34 2.02 -10.74 -0.02 -3.36 16 8 H 0.16 2.63 8.14 -2.38 -0.02 2.61 16 9 C 0.45 14.43 2.69 71.98 0.19 14.62 16 10 F -0.19 -6.17 16.77 44.97 0.75 -5.42 16 11 F -0.19 -5.43 16.78 44.97 0.75 -4.68 16 12 F -0.19 -8.08 14.41 44.97 0.65 -7.44 16 13 C 0.16 4.97 2.45 45.07 0.11 5.08 16 14 H 0.08 2.44 7.70 -2.39 -0.02 2.42 16 15 N -0.74 -32.70 3.68 -322.59 -1.19 -33.89 16 16 C -0.31 -15.96 9.93 84.03 0.83 -15.12 16 17 H 0.08 3.66 7.83 -2.91 -0.02 3.64 16 18 C -0.10 -5.82 5.50 84.86 0.47 -5.36 16 19 N -0.98 -61.38 13.70 21.65 0.30 -61.08 16 20 Si 1.12 50.80 29.92 68.60 2.05 52.86 16 21 H -0.31 -14.78 7.11 99.48 0.71 -14.08 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 24 C 0.09 2.36 5.75 86.36 0.50 2.86 16 25 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.11 2.35 6.20 -2.39 -0.01 2.34 16 28 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.27 7.00 -2.38 -0.02 2.26 16 30 H 0.11 2.34 7.77 -2.39 -0.02 2.32 16 31 H 0.04 1.50 6.12 -2.38 -0.01 1.48 16 32 H 0.36 18.08 3.78 -92.70 -0.35 17.73 16 33 H 0.24 15.28 6.77 -92.71 -0.63 14.65 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 2.49 5.64 -2.38 -0.01 2.48 16 Total: -1.00 -73.36 292.48 5.97 -67.39 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.93 Total: 24.83 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 4.15 Total: 13.69 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -3.26 Total: -114.94 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 9 Polarization: -19.69 SS G_CDS: 2.16 Total: -17.53 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.86 kcal Total: -73.36 5.97 -67.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998207833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.839 kcal (2) G-P(sol) polarization free energy of solvation -73.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds