Wall clock time and date at job start Tue Mar 31 2020 02:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21276 * 119.99571 * 2 1 4 4 N 1.34779 * 119.99681 * 180.02562 * 2 1 3 5 5 C 1.46923 * 120.63482 * 359.96813 * 4 2 1 6 6 C 1.53188 * 108.77549 * 233.63558 * 5 4 2 7 7 C 1.53038 * 109.31443 * 305.36426 * 6 5 4 8 8 H 1.08994 * 109.46195 * 301.34250 * 7 6 5 9 9 C 1.53007 * 109.46057 * 181.38709 * 7 6 5 10 10 F 1.39898 * 109.47040 * 299.93689 * 9 7 6 11 11 F 1.39899 * 109.47070 * 59.93120 * 9 7 6 12 12 F 1.39894 * 109.47455 * 179.97438 * 9 7 6 13 13 C 1.53043 * 109.53730 * 61.37032 * 7 6 5 14 14 H 1.08997 * 109.52489 * 178.67029 * 13 7 6 15 15 N 1.46500 * 109.49786 * 58.58094 * 13 7 6 16 16 C 1.36935 * 119.99795 * 155.16050 * 15 13 7 17 17 H 1.08006 * 119.99956 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00104 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00116 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47261 * 239.99934 * 20 18 16 23 23 H 1.48500 * 109.47454 * 119.99927 * 20 18 16 24 24 C 1.46933 * 120.62502 * 180.02562 * 4 2 1 25 25 H 1.09002 * 109.46962 * 269.99495 * 1 2 3 26 26 H 1.08996 * 109.47433 * 30.00038 * 1 2 3 27 27 H 1.08998 * 109.47050 * 150.00219 * 1 2 3 28 28 H 1.09005 * 109.58600 * 353.42560 * 5 4 2 29 29 H 1.09003 * 109.58412 * 113.84844 * 5 4 2 30 30 H 1.09000 * 109.49779 * 65.32443 * 6 5 4 31 31 H 1.09003 * 109.49723 * 185.38078 * 6 5 4 32 32 H 0.96997 * 120.00022 * 335.16524 * 15 13 7 33 33 H 0.97004 * 120.00335 * 0.02562 * 19 18 16 34 34 H 1.08992 * 109.58567 * 6.57340 * 24 4 2 35 35 H 1.08998 * 109.70022 * 246.22095 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 1.4603 -2.4477 -0.0004 6 6 1.9685 -3.2993 1.1671 7 6 3.4899 -3.4343 1.0706 8 1 3.7541 -3.8920 0.1174 9 6 3.9974 -4.3131 2.2158 10 9 3.6591 -3.7256 3.4395 11 9 3.4089 -5.5792 2.1279 12 9 5.3880 -4.4371 2.1275 13 6 4.1337 -2.0492 1.1671 14 1 5.2183 -2.1477 1.1220 15 7 3.7520 -1.4196 2.4336 16 6 4.5523 -0.4568 2.9882 17 1 5.4648 -0.1613 2.4916 18 6 4.1909 0.1394 4.1885 19 7 3.0792 -0.2211 4.7938 20 14 5.2823 1.4533 4.9447 21 1 6.4652 1.6753 4.0746 22 1 5.7331 1.0094 6.2882 23 1 4.5169 2.7193 5.0727 24 6 3.6501 -1.1834 0.0000 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.3921 -2.2658 0.1177 29 1 1.6426 -2.9696 -0.9399 30 1 1.7048 -2.8191 2.1095 31 1 1.5116 -4.2879 1.1223 32 1 2.9323 -1.6848 2.8794 33 1 2.5126 -0.9037 4.4014 34 1 4.0266 -0.1674 0.1184 35 1 4.0134 -1.6005 -0.9392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998207834.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:57 Heat of formation + Delta-G solvation = -193.984934 kcal Electronic energy + Delta-G solvation = -24187.318683 eV Core-core repulsion = 20190.861299 eV Total energy + Delta-G solvation = -3996.457384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -51.02357 -48.54161 -48.45549 -41.19768 -38.95631 -36.19492 -34.46402 -32.90831 -31.11163 -29.91575 -27.77090 -25.74254 -24.55458 -23.91325 -21.66026 -20.29909 -19.31494 -19.22000 -19.11207 -18.64677 -17.58021 -17.25646 -16.63831 -16.35618 -15.85713 -15.50076 -15.40640 -15.18244 -14.92840 -14.75675 -14.66662 -14.63677 -14.44071 -14.24690 -13.83665 -13.73719 -13.47306 -13.03314 -12.99280 -12.68728 -12.56258 -12.12568 -11.98523 -11.90996 -11.79390 -11.24625 -11.08955 -10.74797 -9.71841 -8.99532 -8.35698 -5.27461 1.52234 1.63916 1.68648 1.74574 1.85603 2.17905 2.67428 2.86766 3.00004 3.13729 3.42137 3.66190 3.71050 3.80678 3.89517 4.02128 4.20774 4.29814 4.38180 4.53594 4.57697 4.65085 4.68696 4.71886 4.78034 4.98034 5.11674 5.16141 5.58232 5.62918 6.52070 6.54129 7.11976 7.29341 8.01811 8.09707 9.16154 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.012331 B = 0.010379 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.105447 B = 2697.193850 C = 4277.116905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.496 3.504 3 O -0.606 6.606 4 N -0.602 5.602 5 C 0.110 3.890 6 C -0.132 4.132 7 C -0.128 4.128 8 H 0.157 0.843 9 C 0.452 3.548 10 F -0.190 7.190 11 F -0.184 7.184 12 F -0.194 7.194 13 C 0.162 3.838 14 H 0.061 0.939 15 N -0.730 5.730 16 C -0.317 4.317 17 H 0.058 0.942 18 C -0.101 4.101 19 N -0.973 5.973 20 Si 1.123 2.877 21 H -0.275 1.275 22 H -0.290 1.290 23 H -0.297 1.297 24 C 0.102 3.898 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.366 0.634 33 H 0.243 0.757 34 H 0.050 0.950 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 -11.433 -13.697 18.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.287 3.713 3 O -0.488 6.488 4 N -0.334 5.334 5 C -0.011 4.011 6 C -0.170 4.170 7 C -0.148 4.148 8 H 0.175 0.825 9 C 0.398 3.602 10 F -0.171 7.171 11 F -0.165 7.165 12 F -0.176 7.176 13 C 0.052 3.948 14 H 0.079 0.921 15 N -0.374 5.374 16 C -0.449 4.449 17 H 0.076 0.924 18 C -0.293 4.293 19 N -0.621 5.621 20 Si 0.950 3.050 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.225 1.225 24 C -0.024 4.024 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.132 0.868 30 H 0.066 0.934 31 H 0.138 0.862 32 H 0.201 0.799 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.675 -9.827 -12.499 16.573 hybrid contribution 0.036 -0.972 -0.340 1.031 sum -4.639 -10.800 -12.839 17.406 Atomic orbital electron populations 1.21959 0.88449 1.06620 1.05275 1.21654 0.92374 0.82829 0.74438 1.90677 1.72207 1.33444 1.52472 1.48105 1.06518 1.06725 1.72085 1.22084 0.98193 0.82049 0.98760 1.22010 0.91522 1.03242 1.00260 1.22811 0.99530 0.95084 0.97367 0.82534 1.20841 0.75109 0.79245 0.84991 1.93228 1.91972 1.83830 1.48112 1.93141 1.83824 1.43169 1.96388 1.93127 1.31935 1.96127 1.96386 1.20726 0.97589 0.89628 0.86871 0.92071 1.42521 1.26303 1.45773 1.22781 1.20248 1.03854 1.15225 1.05563 0.92365 1.26854 1.01180 1.05060 0.96189 1.70915 1.14752 1.34295 1.42154 0.82661 0.73654 0.73473 0.75244 1.20059 1.21695 1.22478 1.22117 0.80671 1.01052 0.98547 0.89115 0.88835 0.85847 0.86292 0.86826 0.93364 0.86186 0.79916 0.94681 0.93094 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 9.46 71.24 0.67 -3.00 16 2 C 0.50 17.30 7.81 87.66 0.68 17.99 16 3 O -0.61 -28.84 16.51 -3.02 -0.05 -28.89 16 4 N -0.60 -17.67 2.89 -818.98 -2.37 -20.03 16 5 C 0.11 1.93 6.22 86.36 0.54 2.47 16 6 C -0.13 -2.92 4.95 30.67 0.15 -2.77 16 7 C -0.13 -3.33 2.02 -10.76 -0.02 -3.35 16 8 H 0.16 2.67 8.14 -2.39 -0.02 2.65 16 9 C 0.45 14.40 2.69 71.98 0.19 14.59 16 10 F -0.19 -7.97 14.40 44.97 0.65 -7.32 16 11 F -0.18 -5.01 16.77 44.97 0.75 -4.25 16 12 F -0.19 -6.64 16.77 44.97 0.75 -5.88 16 13 C 0.16 5.85 2.45 45.06 0.11 5.96 16 14 H 0.06 2.34 7.71 -2.39 -0.02 2.32 16 15 N -0.73 -35.44 3.68 -322.64 -1.19 -36.63 16 16 C -0.32 -18.24 9.93 84.03 0.83 -17.40 16 17 H 0.06 3.35 7.83 -2.91 -0.02 3.33 16 18 C -0.10 -6.12 5.50 84.86 0.47 -5.65 16 19 N -0.97 -62.63 13.70 21.65 0.30 -62.33 16 20 Si 1.12 56.00 29.92 68.60 2.05 58.05 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 23 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 24 C 0.10 3.41 6.04 86.35 0.52 3.93 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.12 1.56 6.19 -2.39 -0.01 1.54 16 28 H 0.12 1.48 5.52 -2.38 -0.01 1.47 16 29 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.47 6.11 -2.39 -0.01 1.46 16 31 H 0.12 1.84 7.77 -2.39 -0.02 1.82 16 32 H 0.37 18.61 3.77 -92.71 -0.35 18.26 16 33 H 0.24 15.52 6.78 -92.70 -0.63 14.89 16 34 H 0.05 2.24 7.00 -2.39 -0.02 2.22 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -82.52 292.40 5.98 -76.54 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.93 Total: 18.00 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 4.15 Total: 12.76 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -3.26 Total: -119.00 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 9 Polarization: -19.62 SS G_CDS: 2.16 Total: -17.46 kcal Atomic # 14 Polarization: 56.00 SS G_CDS: 2.05 Total: 58.05 kcal Total: -82.52 5.98 -76.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998207834.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.444 kcal (2) G-P(sol) polarization free energy of solvation -82.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds