Wall clock time and date at job start Tue Mar 31 2020 02:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46904 * 2 1 4 4 C 1.50699 * 109.47044 * 119.99489 * 2 1 3 5 5 O 1.21286 * 120.00213 * 86.09393 * 4 2 1 6 6 N 1.34777 * 120.00363 * 266.09650 * 4 2 1 7 7 C 1.47024 * 125.65446 * 175.02774 * 6 4 2 8 8 C 1.54317 * 107.27491 * 178.96149 * 7 6 4 9 9 C 1.55157 * 102.94254 * 337.80695 * 8 7 6 10 10 H 1.09003 * 111.00704 * 277.38971 * 9 8 7 11 11 N 1.46501 * 111.00670 * 153.57440 * 9 8 7 12 12 C 1.36939 * 119.99941 * 86.45223 * 11 9 8 13 13 H 1.08002 * 119.99978 * 0.02562 * 12 11 9 14 14 C 1.38809 * 120.00189 * 180.02562 * 12 11 9 15 15 N 1.31611 * 120.00387 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99843 * 0.02562 * 14 12 11 17 17 H 1.48510 * 109.46962 * 269.99838 * 16 14 12 18 18 H 1.48498 * 109.47423 * 29.99446 * 16 14 12 19 19 H 1.48497 * 109.47305 * 150.00124 * 16 14 12 20 20 C 1.47427 * 125.64683 * 355.05280 * 6 4 2 21 21 C 1.52997 * 109.47449 * 239.99353 * 2 1 3 22 22 F 1.39895 * 109.47417 * 300.00399 * 21 2 1 23 23 F 1.39904 * 109.46433 * 60.00123 * 21 2 1 24 24 F 1.39892 * 109.47153 * 179.97438 * 21 2 1 25 25 H 1.08996 * 109.47185 * 55.45288 * 1 2 3 26 26 H 1.09001 * 109.47054 * 175.45981 * 1 2 3 27 27 H 1.09003 * 109.47284 * 295.45175 * 1 2 3 28 28 H 1.09007 * 109.87873 * 59.54279 * 7 6 4 29 29 H 1.08998 * 110.01114 * 298.45797 * 7 6 4 30 30 H 1.09004 * 110.72382 * 219.44813 * 8 7 6 31 31 H 1.08999 * 110.87163 * 96.24254 * 8 7 6 32 32 H 0.96998 * 119.99843 * 266.46078 * 11 9 8 33 33 H 0.97000 * 120.00809 * 179.97438 * 15 14 12 34 34 H 1.09006 * 110.36816 * 85.26687 * 20 6 4 35 35 H 1.09001 * 110.36426 * 322.94529 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.1670 -1.9156 1.2225 6 7 2.3319 -0.0062 2.3400 7 6 2.7303 -0.5764 3.6353 8 6 2.9967 0.6039 4.5931 9 6 3.2815 1.7810 3.6232 10 1 4.3182 1.7678 3.2866 11 7 2.9506 3.0656 4.2449 12 6 3.8783 3.7113 5.0180 13 1 4.8541 3.2737 5.1690 14 6 3.5646 4.9282 5.6075 15 7 4.4563 5.5491 6.3501 16 14 1.8766 5.6847 5.3469 17 1 1.9051 6.5566 4.1450 18 1 0.8752 4.6056 5.1517 19 1 1.5075 6.4934 6.5364 20 6 2.3138 1.4634 2.4560 21 6 2.0401 -0.7214 -1.2491 22 9 1.5738 -2.0403 -1.2491 23 9 1.5737 -0.0619 -2.3914 24 9 3.4390 -0.7208 -1.2493 25 1 -0.3633 0.5827 -0.8464 26 1 -0.3633 -1.0245 -0.0813 27 1 -0.3634 0.4416 0.9279 28 1 3.6373 -1.1691 3.5161 29 1 1.9290 -1.2008 4.0303 30 1 3.8648 0.4028 5.2209 31 1 2.1196 0.8125 5.2057 32 1 2.0743 3.4587 4.1090 33 1 4.2373 6.3996 6.7618 34 1 1.3084 1.8131 2.6909 35 1 2.6696 1.9211 1.5330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019240270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:08 Heat of formation + Delta-G solvation = -172.149055 kcal Electronic energy + Delta-G solvation = -22726.476918 eV Core-core repulsion = 18730.966409 eV Total energy + Delta-G solvation = -3995.510509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.24630 -47.77427 -47.63964 -40.24863 -37.70702 -34.43991 -34.18430 -31.67331 -30.10985 -28.18227 -26.75756 -24.53150 -23.38504 -22.14315 -20.36080 -19.66995 -18.79713 -18.53468 -17.96042 -17.36110 -17.09764 -16.24931 -15.40841 -14.79323 -14.53603 -14.52585 -14.13653 -14.12313 -13.88395 -13.80862 -13.78440 -13.52312 -13.45372 -13.10934 -12.76479 -12.65215 -12.31241 -12.23808 -11.86017 -11.71700 -11.48681 -11.00109 -10.86679 -10.58629 -10.21825 -10.03914 -9.73469 -9.09586 -8.73328 -7.47547 -5.91163 -3.30229 2.13837 2.47790 2.82571 3.25673 3.27916 3.35678 3.49395 3.78943 3.82280 4.32635 4.45118 4.55491 4.61601 4.81975 4.94249 5.11284 5.15331 5.26557 5.34185 5.42902 5.47618 5.57882 5.65336 5.79615 5.90873 6.12744 6.22255 6.45446 6.65877 7.32204 7.81380 7.87148 8.26459 9.02478 9.74295 9.91306 11.26413 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027232 B = 0.004268 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.945848 B = 6559.038861 C = 6924.896167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.162 4.162 3 H 0.134 0.866 4 C 0.535 3.465 5 O -0.526 6.526 6 N -0.604 5.604 7 C 0.109 3.891 8 C -0.154 4.154 9 C 0.178 3.822 10 H 0.075 0.925 11 N -0.738 5.738 12 C -0.253 4.253 13 H 0.093 0.907 14 C 0.011 3.989 15 N -0.928 5.928 16 Si 0.884 3.116 17 H -0.283 1.283 18 H -0.277 1.277 19 H -0.290 1.290 20 C 0.082 3.918 21 C 0.470 3.530 22 F -0.166 7.166 23 F -0.180 7.180 24 F -0.179 7.179 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.363 0.637 33 H 0.262 0.738 34 H 0.074 0.926 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.328 -10.676 -13.259 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.184 4.184 3 H 0.152 0.848 4 C 0.321 3.679 5 O -0.402 6.402 6 N -0.337 5.337 7 C -0.013 4.013 8 C -0.195 4.195 9 C 0.067 3.933 10 H 0.093 0.907 11 N -0.380 5.380 12 C -0.382 4.382 13 H 0.111 0.889 14 C -0.186 4.186 15 N -0.575 5.575 16 Si 0.714 3.286 17 H -0.209 1.209 18 H -0.203 1.203 19 H -0.216 1.216 20 C -0.042 4.042 21 C 0.415 3.585 22 F -0.147 7.147 23 F -0.162 7.162 24 F -0.160 7.160 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.197 0.803 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.033 -11.284 -13.207 19.138 hybrid contribution -1.073 0.685 -0.216 1.291 sum -9.105 -10.599 -13.423 19.376 Atomic orbital electron populations 1.21758 0.88820 1.04757 1.04856 1.22630 1.01742 1.02909 0.91148 0.84807 1.19306 0.78408 0.87026 0.83164 1.90794 1.53107 1.13460 1.82837 1.48335 1.66321 1.08079 1.11005 1.22055 1.00100 0.97082 0.82050 1.23407 1.03074 0.94875 0.98153 1.21252 0.96701 0.85938 0.89445 0.90684 1.42590 1.15141 1.20477 1.59839 1.19014 0.95482 1.01452 1.22258 0.88948 1.24675 0.97407 0.97256 0.99251 1.69686 1.33903 1.17422 1.36463 0.86580 0.85100 0.79296 0.77656 1.20903 1.20299 1.21587 1.22802 1.01340 0.78938 1.01111 1.19854 0.75718 0.78172 0.84716 1.93232 1.88160 1.36720 1.96607 1.93187 1.88520 1.80868 1.53618 1.93213 1.29644 1.96423 1.96723 0.89834 0.90377 0.89729 0.91305 0.91661 0.89984 0.90503 0.80342 0.92813 0.90821 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.93 37.16 0.33 -0.86 16 2 C -0.16 -1.70 2.41 -91.77 -0.22 -1.92 16 3 H 0.13 1.14 6.39 -51.93 -0.33 0.81 16 4 C 0.54 7.35 6.59 -10.99 -0.07 7.27 16 5 O -0.53 -8.92 15.68 5.55 0.09 -8.83 16 6 N -0.60 -8.05 3.33 -170.51 -0.57 -8.62 16 7 C 0.11 1.47 6.87 -3.07 -0.02 1.45 16 8 C -0.15 -2.29 6.65 -24.90 -0.17 -2.46 16 9 C 0.18 2.93 3.69 -65.78 -0.24 2.69 16 10 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 11 N -0.74 -15.35 5.08 -51.35 -0.26 -15.62 16 12 C -0.25 -6.53 10.47 -15.06 -0.16 -6.69 16 13 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 14 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 15 N -0.93 -27.68 13.97 55.49 0.78 -26.91 16 16 Si 0.88 20.44 27.73 -169.99 -4.71 15.72 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 C 0.08 1.05 6.18 -2.53 -0.02 1.04 16 21 C 0.47 5.60 2.56 37.16 0.10 5.69 16 22 F -0.17 -2.24 15.31 2.25 0.03 -2.21 16 23 F -0.18 -1.94 16.88 2.25 0.04 -1.91 16 24 F -0.18 -2.40 17.02 2.25 0.04 -2.36 16 25 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 26 H 0.08 0.69 7.68 -51.93 -0.40 0.30 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.36 7.32 5.57 -40.82 -0.23 7.10 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 0.88 8.00 -51.93 -0.42 0.47 16 35 H 0.08 0.89 6.86 -51.93 -0.36 0.53 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -30.84 303.22 -4.83 -35.68 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -4.27 Total: 4.06 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.56 Total: 6.42 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.05 Total: -51.14 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.11 Total: -6.47 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.71 Total: 15.72 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.84 -4.83 -35.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019240270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.472 kcal (2) G-P(sol) polarization free energy of solvation -30.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds