Wall clock time and date at job start Tue Mar 31 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46904 * 2 1 4 4 C 1.50699 * 109.47044 * 119.99489 * 2 1 3 5 5 O 1.21286 * 120.00213 * 86.09393 * 4 2 1 6 6 N 1.34777 * 120.00363 * 266.09650 * 4 2 1 7 7 C 1.47024 * 125.65446 * 175.02774 * 6 4 2 8 8 C 1.54317 * 107.27491 * 178.96149 * 7 6 4 9 9 C 1.55157 * 102.94254 * 337.80695 * 8 7 6 10 10 H 1.09003 * 111.00704 * 277.38971 * 9 8 7 11 11 N 1.46501 * 111.00670 * 153.57440 * 9 8 7 12 12 C 1.36939 * 119.99941 * 86.45223 * 11 9 8 13 13 H 1.08002 * 119.99978 * 0.02562 * 12 11 9 14 14 C 1.38809 * 120.00189 * 180.02562 * 12 11 9 15 15 N 1.31611 * 120.00387 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99843 * 0.02562 * 14 12 11 17 17 H 1.48510 * 109.46962 * 269.99838 * 16 14 12 18 18 H 1.48498 * 109.47423 * 29.99446 * 16 14 12 19 19 H 1.48497 * 109.47305 * 150.00124 * 16 14 12 20 20 C 1.47427 * 125.64683 * 355.05280 * 6 4 2 21 21 C 1.52997 * 109.47449 * 239.99353 * 2 1 3 22 22 F 1.39895 * 109.47417 * 300.00399 * 21 2 1 23 23 F 1.39904 * 109.46433 * 60.00123 * 21 2 1 24 24 F 1.39892 * 109.47153 * 179.97438 * 21 2 1 25 25 H 1.08996 * 109.47185 * 55.45288 * 1 2 3 26 26 H 1.09001 * 109.47054 * 175.45981 * 1 2 3 27 27 H 1.09003 * 109.47284 * 295.45175 * 1 2 3 28 28 H 1.09007 * 109.87873 * 59.54279 * 7 6 4 29 29 H 1.08998 * 110.01114 * 298.45797 * 7 6 4 30 30 H 1.09004 * 110.72382 * 219.44813 * 8 7 6 31 31 H 1.08999 * 110.87163 * 96.24254 * 8 7 6 32 32 H 0.96998 * 119.99843 * 266.46078 * 11 9 8 33 33 H 0.97000 * 120.00809 * 179.97438 * 15 14 12 34 34 H 1.09006 * 110.36816 * 85.26687 * 20 6 4 35 35 H 1.09001 * 110.36426 * 322.94529 * 20 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.1670 -1.9156 1.2225 6 7 2.3319 -0.0062 2.3400 7 6 2.7303 -0.5764 3.6353 8 6 2.9967 0.6039 4.5931 9 6 3.2815 1.7810 3.6232 10 1 4.3182 1.7678 3.2866 11 7 2.9506 3.0656 4.2449 12 6 3.8783 3.7113 5.0180 13 1 4.8541 3.2737 5.1690 14 6 3.5646 4.9282 5.6075 15 7 4.4563 5.5491 6.3501 16 14 1.8766 5.6847 5.3469 17 1 1.9051 6.5566 4.1450 18 1 0.8752 4.6056 5.1517 19 1 1.5075 6.4934 6.5364 20 6 2.3138 1.4634 2.4560 21 6 2.0401 -0.7214 -1.2491 22 9 1.5738 -2.0403 -1.2491 23 9 1.5737 -0.0619 -2.3914 24 9 3.4390 -0.7208 -1.2493 25 1 -0.3633 0.5827 -0.8464 26 1 -0.3633 -1.0245 -0.0813 27 1 -0.3634 0.4416 0.9279 28 1 3.6373 -1.1691 3.5161 29 1 1.9290 -1.2008 4.0303 30 1 3.8648 0.4028 5.2209 31 1 2.1196 0.8125 5.2057 32 1 2.0743 3.4587 4.1090 33 1 4.2373 6.3996 6.7618 34 1 1.3084 1.8131 2.6909 35 1 2.6696 1.9211 1.5330 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019240270.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:07 Heat of formation + Delta-G solvation = -192.661793 kcal Electronic energy + Delta-G solvation = -22727.366417 eV Core-core repulsion = 18730.966409 eV Total energy + Delta-G solvation = -3996.400008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.17871 -48.69754 -48.60641 -41.34553 -38.94165 -36.01366 -35.13666 -33.46072 -31.43221 -29.51906 -27.52175 -25.73830 -24.99851 -23.24752 -21.70683 -20.71855 -19.79912 -19.74013 -19.44755 -18.36638 -18.14952 -17.49319 -16.49030 -16.33518 -15.72069 -15.55873 -15.42598 -15.15125 -15.06222 -14.82531 -14.76795 -14.73725 -14.47844 -14.29314 -14.04083 -13.68401 -13.45602 -13.31715 -13.17238 -12.97147 -12.70078 -12.50810 -12.16409 -12.09851 -11.78896 -11.65571 -11.12919 -10.95743 -9.82868 -9.33365 -7.99114 -5.35338 1.14309 1.43244 1.47657 1.49665 1.55160 1.85360 2.52771 2.61113 2.81847 2.94963 3.30664 3.36457 3.61240 3.70969 3.79503 3.82483 3.98832 4.20400 4.28964 4.42376 4.58848 4.61942 4.65252 4.78468 4.94164 5.05558 5.07521 5.21889 5.35736 5.79713 6.23173 6.26248 6.81172 7.09856 7.81803 8.02268 9.21969 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027232 B = 0.004268 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.945848 B = 6559.038861 C = 6924.896167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.155 4.155 3 H 0.160 0.840 4 C 0.533 3.467 5 O -0.563 6.563 6 N -0.603 5.603 7 C 0.115 3.885 8 C -0.145 4.145 9 C 0.166 3.834 10 H 0.062 0.938 11 N -0.738 5.738 12 C -0.232 4.232 13 H 0.057 0.943 14 C -0.061 4.061 15 N -0.985 5.985 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.242 1.242 19 H -0.304 1.304 20 C 0.092 3.908 21 C 0.466 3.534 22 F -0.179 7.179 23 F -0.172 7.172 24 F -0.191 7.191 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.371 0.629 33 H 0.257 0.743 34 H 0.095 0.905 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.803 -10.614 -14.800 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 H 0.178 0.822 4 C 0.321 3.679 5 O -0.442 6.442 6 N -0.335 5.335 7 C -0.008 4.008 8 C -0.185 4.185 9 C 0.056 3.944 10 H 0.080 0.920 11 N -0.381 5.381 12 C -0.363 4.363 13 H 0.075 0.925 14 C -0.253 4.253 15 N -0.635 5.635 16 Si 0.782 3.218 17 H -0.202 1.202 18 H -0.167 1.167 19 H -0.231 1.231 20 C -0.031 4.031 21 C 0.412 3.588 22 F -0.160 7.160 23 F -0.153 7.153 24 F -0.172 7.172 25 H 0.124 0.876 26 H 0.086 0.914 27 H 0.116 0.884 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.206 0.794 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.533 -11.272 -14.792 21.373 hybrid contribution -0.192 0.560 0.244 0.640 sum -10.726 -10.712 -14.549 21.010 Atomic orbital electron populations 1.21839 0.86796 1.04783 1.06561 1.22717 1.03245 1.03272 0.88441 0.82215 1.19821 0.77608 0.86696 0.83790 1.90783 1.54680 1.15235 1.83483 1.48346 1.66064 1.08266 1.10872 1.21954 1.00419 0.96390 0.82028 1.23225 1.02617 0.94721 0.97976 1.21408 0.97281 0.84547 0.91164 0.92035 1.42452 1.14472 1.21710 1.59485 1.18942 0.94933 1.01038 1.21394 0.92542 1.25518 1.01840 0.98207 0.99733 1.69886 1.36685 1.18072 1.38835 0.85427 0.80577 0.78890 0.76948 1.20207 1.16652 1.23085 1.22736 1.01373 0.78605 1.00375 1.20116 0.75186 0.77887 0.85657 1.93208 1.88231 1.37850 1.96718 1.93202 1.88316 1.80544 1.53287 1.93191 1.30763 1.96451 1.96834 0.87579 0.91378 0.88433 0.91675 0.90662 0.90987 0.90529 0.79442 0.93379 0.88650 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.93 71.98 0.64 -1.17 16 2 C -0.15 -2.75 2.41 -11.54 -0.03 -2.77 16 3 H 0.16 1.98 6.39 -2.39 -0.02 1.96 16 4 C 0.53 13.33 6.59 87.66 0.58 13.91 16 5 O -0.56 -18.38 15.68 -3.05 -0.05 -18.43 16 6 N -0.60 -14.36 3.33 -811.77 -2.70 -17.06 16 7 C 0.11 2.87 6.87 86.73 0.60 3.47 16 8 C -0.14 -4.10 6.65 31.78 0.21 -3.89 16 9 C 0.17 5.15 3.69 46.38 0.17 5.32 16 10 H 0.06 2.09 8.13 -2.39 -0.02 2.07 16 11 N -0.74 -29.21 5.08 -316.37 -1.61 -30.82 16 12 C -0.23 -12.03 10.47 84.03 0.88 -11.15 16 13 H 0.06 3.27 8.06 -2.91 -0.02 3.25 16 14 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 15 N -0.98 -60.31 13.97 21.65 0.30 -60.01 16 16 Si 0.95 41.29 27.73 68.60 1.90 43.19 16 17 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.24 -8.99 6.52 99.48 0.65 -8.34 16 19 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 20 C 0.09 2.02 6.18 86.85 0.54 2.56 16 21 C 0.47 10.12 2.56 71.98 0.18 10.30 16 22 F -0.18 -4.62 15.31 44.97 0.69 -3.93 16 23 F -0.17 -3.25 16.88 44.97 0.76 -2.50 16 24 F -0.19 -4.84 17.02 44.97 0.77 -4.08 16 25 H 0.11 0.90 7.93 -2.39 -0.02 0.88 16 26 H 0.07 1.03 7.68 -2.39 -0.02 1.01 16 27 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.37 13.59 5.57 -92.71 -0.52 13.07 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.10 1.78 8.00 -2.38 -0.02 1.76 16 35 H 0.10 1.82 6.86 -2.39 -0.02 1.81 16 Total: -1.00 -68.20 303.22 4.85 -63.35 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.55 Total: 16.60 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 4.24 Total: 13.67 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -4.01 Total: -107.89 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.05 Total: -18.43 kcal Atomic # 9 Polarization: -12.72 SS G_CDS: 2.21 Total: -10.50 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.90 Total: 43.19 kcal Total: -68.20 4.85 -63.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019240270.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.309 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds