Wall clock time and date at job start Tue Mar 31 2020 01:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.88689 * 2 1 4 4 C 1.54907 * 111.00730 * 236.12071 * 2 1 3 5 5 N 1.47420 * 104.83524 * 204.91485 * 4 2 1 6 6 C 1.34780 * 125.65180 * 204.09058 * 5 4 2 7 7 O 1.21276 * 119.99621 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00219 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.46913 * 180.02562 * 8 6 5 10 10 F 1.39899 * 109.47083 * 60.00198 * 9 8 6 11 11 F 1.39908 * 109.46700 * 179.97438 * 9 8 6 12 12 F 1.39898 * 109.46892 * 299.99640 * 9 8 6 13 13 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 14 14 C 1.54330 * 107.26840 * 358.94103 * 13 5 4 15 15 H 1.08991 * 110.72004 * 219.44241 * 14 13 5 16 16 N 1.46499 * 110.71556 * 96.16892 * 14 13 5 17 17 C 1.36946 * 119.99920 * 86.45572 * 16 14 13 18 18 H 1.08000 * 119.99914 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00049 * 179.97438 * 17 16 14 20 20 N 1.31629 * 120.00102 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00271 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46905 * 60.00009 * 21 19 17 23 23 H 1.48499 * 109.47459 * 180.02562 * 21 19 17 24 24 H 1.48507 * 109.46668 * 300.00341 * 21 19 17 25 25 H 1.09004 * 109.46972 * 182.42609 * 1 2 3 26 26 H 1.08998 * 109.47042 * 302.42241 * 1 2 3 27 27 H 1.08993 * 109.47294 * 62.42978 * 1 2 3 28 28 H 1.08997 * 110.36783 * 86.07204 * 4 2 1 29 29 H 1.08997 * 110.45914 * 323.79855 * 4 2 1 30 30 H 1.09008 * 109.46861 * 300.00115 * 8 6 5 31 31 H 1.08997 * 109.46822 * 59.99853 * 8 6 5 32 32 H 1.08998 * 109.88351 * 118.35702 * 13 5 4 33 33 H 1.08998 * 109.88379 * 239.52492 * 13 5 4 34 34 H 0.96998 * 120.00239 * 266.45268 * 16 14 13 35 35 H 0.96997 * 119.99978 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8061 -1.2006 5 7 3.4271 -1.2427 -0.7738 6 6 4.4477 -1.5609 -1.5946 7 8 4.3009 -1.4987 -2.7968 8 6 5.7712 -1.9940 -1.0185 9 6 6.7491 -2.2938 -2.1563 10 9 6.9316 -1.1425 -2.9299 11 9 7.9779 -2.6953 -1.6214 12 9 6.2321 -3.3173 -2.9578 13 6 3.4675 -1.2743 0.6956 14 6 2.0862 -0.8082 1.2019 15 1 2.1922 -0.1706 2.0795 16 7 1.2269 -1.9579 1.4955 17 6 1.2817 -2.5573 2.7256 18 1 1.9586 -2.1827 3.4791 19 6 0.4672 -3.6463 3.0039 20 7 -0.3575 -4.1032 2.0853 21 14 0.5413 -4.4635 4.6820 22 1 0.1873 -3.4734 5.7307 23 1 -0.4193 -5.5951 4.7244 24 1 1.9154 -4.9717 4.9247 25 1 -0.3633 -1.0268 0.0435 26 1 -0.3633 0.5510 0.8675 27 1 -0.3633 0.4756 -0.9109 28 1 2.1559 -0.1712 -2.0837 29 1 1.4526 -1.6698 -1.4049 30 1 6.1742 -1.1963 -0.3942 31 1 5.6289 -2.8906 -0.4154 32 1 3.6651 -2.2896 1.0392 33 1 4.2427 -0.6000 1.0597 34 1 0.6192 -2.2946 0.8186 35 1 -0.9263 -4.8644 2.2797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054462768.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:32 Heat of formation + Delta-G solvation = -195.379308 kcal Electronic energy + Delta-G solvation = -22717.511044 eV Core-core repulsion = 18720.993195 eV Total energy + Delta-G solvation = -3996.517849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.10226 -48.61960 -48.56735 -41.21706 -39.10950 -35.71166 -34.13877 -32.75400 -32.06846 -29.31576 -27.62199 -25.77819 -24.90391 -23.41765 -20.73785 -20.64383 -19.67462 -19.58083 -19.29058 -18.32976 -17.74592 -17.21939 -16.62491 -16.14493 -15.88471 -15.54055 -15.42727 -15.28797 -14.98759 -14.75069 -14.70547 -14.63500 -14.49648 -14.23902 -13.59431 -13.41572 -13.25720 -13.08749 -12.98620 -12.83753 -12.72984 -12.30472 -12.15700 -11.96181 -11.42015 -11.38335 -11.20346 -10.90481 -9.70423 -8.98376 -7.89635 -5.17675 1.39049 1.49428 1.53071 1.53855 1.59836 2.00537 2.60355 2.69527 2.97574 3.03680 3.42557 3.50840 3.77915 3.90715 3.94231 4.10526 4.11706 4.22094 4.44560 4.62829 4.66755 4.75055 4.88834 4.99970 5.02494 5.17366 5.24928 5.35840 5.57700 5.62948 6.31876 6.42569 6.91381 7.39743 8.14853 8.36276 9.33550 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019544 B = 0.004806 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.312780 B = 5825.108825 C = 6707.641312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 H 0.112 0.888 4 C 0.114 3.886 5 N -0.601 5.601 6 C 0.524 3.476 7 O -0.576 6.576 8 C -0.181 4.181 9 C 0.471 3.529 10 F -0.185 7.185 11 F -0.176 7.176 12 F -0.191 7.191 13 C 0.073 3.927 14 C 0.160 3.840 15 H 0.086 0.914 16 N -0.724 5.724 17 C -0.233 4.233 18 H 0.086 0.914 19 C -0.073 4.073 20 N -0.971 5.971 21 Si 0.966 3.034 22 H -0.278 1.278 23 H -0.306 1.306 24 H -0.278 1.278 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.175 0.825 31 H 0.157 0.843 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.375 0.625 35 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.226 8.982 -3.337 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.118 4.118 3 H 0.131 0.869 4 C -0.008 4.008 5 N -0.333 5.333 6 C 0.312 3.688 7 O -0.457 6.457 8 C -0.221 4.221 9 C 0.416 3.584 10 F -0.166 7.166 11 F -0.158 7.158 12 F -0.172 7.172 13 C -0.052 4.052 14 C 0.050 3.950 15 H 0.104 0.896 16 N -0.365 5.365 17 C -0.365 4.365 18 H 0.104 0.896 19 C -0.266 4.266 20 N -0.622 5.622 21 Si 0.796 3.204 22 H -0.204 1.204 23 H -0.233 1.233 24 H -0.204 1.204 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.192 0.808 31 H 0.175 0.825 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.208 0.792 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.266 8.945 -3.835 15.658 hybrid contribution -0.414 -1.218 0.298 1.320 sum 11.852 7.727 -3.537 14.584 Atomic orbital electron populations 1.21507 0.93767 1.01509 1.01913 1.22581 0.96585 0.99447 0.93179 0.86945 1.22265 0.82328 0.97866 0.98379 1.48400 1.11735 1.64840 1.08291 1.19932 0.85429 0.77547 0.85880 1.90772 1.83805 1.55381 1.15750 1.22984 0.91419 1.10339 0.97357 1.19985 0.80646 0.74154 0.83575 1.93187 1.95606 1.50115 1.77707 1.93207 1.45885 1.90882 1.85806 1.93191 1.86788 1.60859 1.76381 1.23274 1.01765 1.02552 0.77574 1.21492 0.88458 0.88705 0.96339 0.89634 1.42667 1.46198 1.34008 1.13607 1.19621 1.16960 1.08322 0.91592 0.89632 1.25467 0.99742 1.00480 1.00870 1.69809 1.28934 1.28266 1.35145 0.85322 0.76956 0.77611 0.80500 1.20394 1.23283 1.20418 0.94307 0.92120 0.91364 0.90381 0.93606 0.80771 0.82535 0.91750 0.87953 0.79158 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 8.98 71.98 0.65 -3.02 16 2 C -0.10 -2.59 3.51 -9.40 -0.03 -2.63 16 3 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.11 3.39 6.35 86.86 0.55 3.94 16 5 N -0.60 -17.14 3.33 -811.80 -2.70 -19.84 16 6 C 0.52 15.27 7.62 87.66 0.67 15.94 16 7 O -0.58 -21.34 15.09 -3.02 -0.05 -21.39 16 8 C -0.18 -3.60 4.94 29.85 0.15 -3.46 16 9 C 0.47 11.35 2.89 71.98 0.21 11.55 16 10 F -0.18 -5.02 16.40 44.97 0.74 -4.28 16 11 F -0.18 -3.76 17.32 44.97 0.78 -2.98 16 12 F -0.19 -5.68 16.40 44.97 0.74 -4.94 16 13 C 0.07 1.92 6.23 86.73 0.54 2.46 16 14 C 0.16 4.96 3.37 46.18 0.16 5.12 16 15 H 0.09 2.47 8.12 -2.39 -0.02 2.45 16 16 N -0.72 -31.25 4.59 -317.33 -1.46 -32.70 16 17 C -0.23 -11.35 9.98 84.03 0.84 -10.52 16 18 H 0.09 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 20 N -0.97 -56.48 13.06 21.65 0.28 -56.19 16 21 Si 0.97 43.18 29.55 68.60 2.03 45.20 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.31 -14.29 7.11 99.48 0.71 -13.58 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H 0.04 1.38 6.17 -2.38 -0.01 1.37 16 26 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 2.22 8.04 -2.39 -0.02 2.20 16 29 H 0.05 1.60 8.04 -2.39 -0.02 1.58 16 30 H 0.17 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.16 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.06 1.95 8.04 -2.39 -0.02 1.93 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.37 18.16 6.02 -92.71 -0.56 17.60 16 35 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -65.71 305.84 5.11 -60.60 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.56 Total: 20.56 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 4.19 Total: 15.97 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -3.87 Total: -108.73 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 9 Polarization: -14.46 SS G_CDS: 2.25 Total: -12.21 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -65.71 5.11 -60.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054462768.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.783 kcal (2) G-P(sol) polarization free energy of solvation -65.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds