Wall clock time and date at job start Tue Mar 31 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91452 * 2 1 4 4 C 1.54905 * 111.00859 * 123.90596 * 2 1 3 5 5 N 1.47419 * 104.92834 * 155.14142 * 4 2 1 6 6 C 1.34780 * 125.65139 * 155.80015 * 5 4 2 7 7 O 1.21287 * 119.99688 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00303 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47229 * 179.97438 * 8 6 5 10 10 F 1.39904 * 109.47064 * 60.00025 * 9 8 6 11 11 F 1.39899 * 109.47220 * 179.97438 * 9 8 6 12 12 F 1.39903 * 109.47220 * 300.00215 * 9 8 6 13 13 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 14 14 C 1.54321 * 107.26791 * 1.06162 * 13 5 4 15 15 H 1.08998 * 110.72073 * 263.64892 * 14 13 5 16 16 N 1.46505 * 110.72162 * 140.55498 * 14 13 5 17 17 C 1.36933 * 119.99837 * 86.45308 * 16 14 13 18 18 H 1.08001 * 120.00555 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99706 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00116 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99674 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47032 * 89.99599 * 21 19 17 23 23 H 1.48504 * 109.46868 * 209.99515 * 21 19 17 24 24 H 1.48499 * 109.47322 * 329.99695 * 21 19 17 25 25 H 1.09000 * 109.47194 * 297.54464 * 1 2 3 26 26 H 1.09001 * 109.47578 * 57.54908 * 1 2 3 27 27 H 1.09003 * 109.46933 * 177.54637 * 1 2 3 28 28 H 1.09002 * 110.36692 * 36.24515 * 4 2 1 29 29 H 1.08995 * 110.36664 * 274.03317 * 4 2 1 30 30 H 1.09004 * 109.47049 * 299.99920 * 8 6 5 31 31 H 1.08999 * 109.47179 * 59.99802 * 8 6 5 32 32 H 1.08998 * 109.88266 * 120.47537 * 13 5 4 33 33 H 1.08997 * 109.88244 * 241.48894 * 13 5 4 34 34 H 0.96997 * 119.99915 * 266.45504 * 16 14 13 35 35 H 0.97006 * 119.99639 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 1.2002 5 7 3.4280 -1.2429 0.7758 6 6 4.4478 -1.5592 1.5984 7 8 4.2994 -1.4952 2.8005 8 6 5.7723 -1.9922 1.0247 9 6 6.7490 -2.2896 2.1643 10 9 6.2317 -3.3121 2.9668 11 9 7.9784 -2.6921 1.6317 12 9 6.9296 -1.1370 2.9364 13 6 3.4707 -1.2757 -0.6935 14 6 2.0901 -0.8106 -1.2023 15 1 1.4525 -1.6664 -1.4241 16 7 2.2340 0.0456 -2.3824 17 6 2.3109 -0.5146 -3.6295 18 1 2.2659 -1.5876 -3.7433 19 6 2.4478 0.2967 -4.7475 20 7 2.5032 1.6044 -4.6089 21 14 2.5534 -0.4676 -6.4488 22 1 1.1883 -0.5986 -7.0182 23 1 3.3765 0.3989 -7.3304 24 1 3.1796 -1.8105 -6.3502 25 1 -0.3633 0.4752 0.9112 26 1 -0.3634 0.5514 -0.8672 27 1 -0.3633 -1.0268 -0.0440 28 1 1.4520 -1.6705 1.4023 29 1 2.1542 -0.1726 2.0841 30 1 5.6314 -2.8900 0.4228 31 1 6.1755 -1.1953 0.3998 32 1 4.2461 -0.6013 -1.0569 33 1 3.6720 -2.2907 -1.0359 34 1 2.2748 1.0093 -2.2802 35 1 2.5985 2.1713 -5.3903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054462769.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:34 Heat of formation + Delta-G solvation = -181.261354 kcal Electronic energy + Delta-G solvation = -22479.299474 eV Core-core repulsion = 18483.393826 eV Total energy + Delta-G solvation = -3995.905648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.09973 -47.64137 -47.51350 -40.01588 -37.75309 -34.21135 -32.90829 -31.61109 -30.77852 -27.65774 -26.53948 -24.25673 -23.68467 -21.65480 -20.09336 -19.59104 -18.57860 -18.56710 -17.38183 -17.17454 -16.69845 -16.08537 -15.28479 -14.98424 -14.47282 -14.39303 -14.10095 -13.96449 -13.71144 -13.68417 -13.66078 -13.43977 -13.16160 -12.90345 -12.69381 -12.31631 -12.19348 -12.05360 -11.65625 -11.23711 -11.09002 -10.84608 -10.70707 -10.35576 -10.10813 -10.02339 -9.81541 -9.10489 -8.54062 -7.20136 -5.94183 -3.25832 2.46842 2.49249 3.02658 3.33185 3.38958 3.40694 3.65123 3.98468 3.98709 4.43563 4.55503 4.89256 4.92332 5.00859 5.04133 5.12600 5.45752 5.51506 5.63024 5.72531 5.78909 5.88935 6.07685 6.13534 6.21945 6.35642 6.37444 6.51003 6.74549 7.50852 7.55396 8.02114 8.22921 9.35269 9.87986 10.22747 11.27489 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019187 B = 0.004529 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.934779 B = 6180.606750 C = 7218.536456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.115 3.885 5 N -0.606 5.606 6 C 0.531 3.469 7 O -0.537 6.537 8 C -0.192 4.192 9 C 0.473 3.527 10 F -0.175 7.175 11 F -0.184 7.184 12 F -0.174 7.174 13 C 0.066 3.934 14 C 0.178 3.822 15 H 0.068 0.932 16 N -0.711 5.711 17 C -0.252 4.252 18 H 0.073 0.927 19 C -0.006 4.006 20 N -0.928 5.928 21 Si 0.908 3.092 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.387 0.613 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.502 -6.503 10.718 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.008 4.008 5 N -0.339 5.339 6 C 0.317 3.683 7 O -0.414 6.414 8 C -0.233 4.233 9 C 0.418 3.582 10 F -0.156 7.156 11 F -0.165 7.165 12 F -0.155 7.155 13 C -0.060 4.060 14 C 0.065 3.935 15 H 0.086 0.914 16 N -0.351 5.351 17 C -0.383 4.383 18 H 0.091 0.909 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.738 3.262 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.222 0.778 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.506 -6.576 11.230 13.477 hybrid contribution 0.420 -0.127 -1.004 1.096 sum 3.926 -6.703 10.225 12.841 Atomic orbital electron populations 1.21600 0.93663 1.01933 1.01882 1.22684 0.96466 0.99801 0.94380 0.89686 1.22308 0.82101 0.98360 0.98011 1.48414 1.11939 1.65290 1.08247 1.19346 0.84277 0.78361 0.86282 1.90790 1.82818 1.53834 1.13997 1.22939 0.94139 1.08362 0.97850 1.19751 0.80113 0.74812 0.83477 1.93210 1.86509 1.60205 1.75714 1.93194 1.46259 1.90931 1.86150 1.93216 1.95525 1.49512 1.77276 1.23511 1.04029 1.01534 0.76953 1.21300 0.91316 0.93936 0.86925 0.91400 1.42365 1.86874 1.05323 1.00534 1.19227 1.43579 0.91929 0.83574 0.90933 1.24771 1.02113 0.95339 0.98046 1.69656 1.56143 1.02369 1.29320 0.86198 0.77598 0.78090 0.84291 1.21544 1.21689 1.20637 0.93072 0.91348 0.92713 0.91306 0.90667 0.84494 0.84314 0.90478 0.91900 0.77803 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 9.31 37.16 0.35 -1.38 16 2 C -0.11 -1.63 3.26 -88.31 -0.29 -1.92 16 3 H 0.08 1.31 8.01 -51.93 -0.42 0.89 16 4 C 0.11 1.56 6.37 -2.53 -0.02 1.55 16 5 N -0.61 -8.71 3.33 -170.53 -0.57 -9.28 16 6 C 0.53 7.80 7.62 -10.98 -0.08 7.71 16 7 O -0.54 -9.54 15.09 5.55 0.08 -9.46 16 8 C -0.19 -2.16 4.94 -27.88 -0.14 -2.29 16 9 C 0.47 5.97 2.89 37.16 0.11 6.08 16 10 F -0.17 -2.46 16.40 2.25 0.04 -2.42 16 11 F -0.18 -2.16 17.32 2.25 0.04 -2.12 16 12 F -0.17 -2.51 16.40 2.25 0.04 -2.47 16 13 C 0.07 0.98 6.24 -3.06 -0.02 0.96 16 14 C 0.18 3.01 3.07 -65.94 -0.20 2.80 16 15 H 0.07 1.16 8.01 -51.93 -0.42 0.75 16 16 N -0.71 -15.61 5.18 -51.50 -0.27 -15.87 16 17 C -0.25 -6.28 9.98 -15.06 -0.15 -6.43 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 20 N -0.93 -26.07 13.06 55.49 0.72 -25.34 16 21 Si 0.91 20.83 29.55 -169.99 -5.02 15.80 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 29 H 0.07 1.04 8.03 -51.93 -0.42 0.62 16 30 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.08 1.24 8.03 -51.93 -0.42 0.83 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.39 9.22 7.72 -40.82 -0.32 8.90 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -29.27 309.61 -5.29 -34.56 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.48 Total: 5.10 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.54 Total: 6.85 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.11 Total: -50.50 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 9 Polarization: -7.13 SS G_CDS: 0.11 Total: -7.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.27 -5.29 -34.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054462769.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.701 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds