Wall clock time and date at job start Tue Mar 31 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.91452 * 2 1 4 4 C 1.54905 * 111.00859 * 123.90596 * 2 1 3 5 5 N 1.47419 * 104.92834 * 155.14142 * 4 2 1 6 6 C 1.34780 * 125.65139 * 155.80015 * 5 4 2 7 7 O 1.21287 * 119.99688 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00303 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47229 * 179.97438 * 8 6 5 10 10 F 1.39904 * 109.47064 * 60.00025 * 9 8 6 11 11 F 1.39899 * 109.47220 * 179.97438 * 9 8 6 12 12 F 1.39903 * 109.47220 * 300.00215 * 9 8 6 13 13 C 1.47026 * 108.70576 * 335.81449 * 5 4 2 14 14 C 1.54321 * 107.26791 * 1.06162 * 13 5 4 15 15 H 1.08998 * 110.72073 * 263.64892 * 14 13 5 16 16 N 1.46505 * 110.72162 * 140.55498 * 14 13 5 17 17 C 1.36933 * 119.99837 * 86.45308 * 16 14 13 18 18 H 1.08001 * 120.00555 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99706 * 180.02562 * 17 16 14 20 20 N 1.31616 * 120.00116 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99674 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47032 * 89.99599 * 21 19 17 23 23 H 1.48504 * 109.46868 * 209.99515 * 21 19 17 24 24 H 1.48499 * 109.47322 * 329.99695 * 21 19 17 25 25 H 1.09000 * 109.47194 * 297.54464 * 1 2 3 26 26 H 1.09001 * 109.47578 * 57.54908 * 1 2 3 27 27 H 1.09003 * 109.46933 * 177.54637 * 1 2 3 28 28 H 1.09002 * 110.36692 * 36.24515 * 4 2 1 29 29 H 1.08995 * 110.36664 * 274.03317 * 4 2 1 30 30 H 1.09004 * 109.47049 * 299.99920 * 8 6 5 31 31 H 1.08999 * 109.47179 * 59.99802 * 8 6 5 32 32 H 1.08998 * 109.88266 * 120.47537 * 13 5 4 33 33 H 1.08997 * 109.88244 * 241.48894 * 13 5 4 34 34 H 0.96997 * 119.99915 * 266.45504 * 16 14 13 35 35 H 0.97006 * 119.99639 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 1.2002 5 7 3.4280 -1.2429 0.7758 6 6 4.4478 -1.5592 1.5984 7 8 4.2994 -1.4952 2.8005 8 6 5.7723 -1.9922 1.0247 9 6 6.7490 -2.2896 2.1643 10 9 6.2317 -3.3121 2.9668 11 9 7.9784 -2.6921 1.6317 12 9 6.9296 -1.1370 2.9364 13 6 3.4707 -1.2757 -0.6935 14 6 2.0901 -0.8106 -1.2023 15 1 1.4525 -1.6664 -1.4241 16 7 2.2340 0.0456 -2.3824 17 6 2.3109 -0.5146 -3.6295 18 1 2.2659 -1.5876 -3.7433 19 6 2.4478 0.2967 -4.7475 20 7 2.5032 1.6044 -4.6089 21 14 2.5534 -0.4676 -6.4488 22 1 1.1883 -0.5986 -7.0182 23 1 3.3765 0.3989 -7.3304 24 1 3.1796 -1.8105 -6.3502 25 1 -0.3633 0.4752 0.9112 26 1 -0.3634 0.5514 -0.8672 27 1 -0.3633 -1.0268 -0.0440 28 1 1.4520 -1.6705 1.4023 29 1 2.1542 -0.1726 2.0841 30 1 5.6314 -2.8900 0.4228 31 1 6.1755 -1.1953 0.3998 32 1 4.2461 -0.6013 -1.0569 33 1 3.6720 -2.2907 -1.0359 34 1 2.2748 1.0093 -2.2802 35 1 2.5985 2.1713 -5.3903 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054462769.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:34 Heat of formation + Delta-G solvation = -199.433258 kcal Electronic energy + Delta-G solvation = -22480.087467 eV Core-core repulsion = 18483.393826 eV Total energy + Delta-G solvation = -3996.693641 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.10829 -48.62665 -48.57021 -41.21010 -39.02847 -35.85909 -34.17706 -32.82965 -32.26373 -29.12254 -27.62963 -25.89983 -24.82667 -22.98824 -21.38952 -20.70866 -19.61099 -19.58849 -19.04917 -18.37408 -17.87877 -17.27625 -16.54916 -16.40671 -15.71647 -15.44295 -15.35655 -15.29425 -14.99595 -14.75539 -14.71069 -14.63430 -14.57808 -14.07223 -13.95338 -13.48368 -13.30979 -13.06702 -12.98050 -12.82752 -12.79929 -12.22605 -12.11362 -12.00244 -11.65829 -11.42004 -11.21711 -10.90906 -9.72997 -9.03387 -7.91549 -5.21003 1.36544 1.45749 1.53166 1.54298 1.61594 1.96928 2.59135 2.68643 2.93272 3.02663 3.40643 3.47834 3.76427 3.82602 3.89311 4.08306 4.21482 4.25088 4.38528 4.48317 4.63326 4.69324 4.89685 4.92548 5.09197 5.15877 5.19232 5.34970 5.49779 5.59498 6.28772 6.35853 6.87737 7.37516 8.09381 8.32439 9.31351 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.019187 B = 0.004529 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.934779 B = 6180.606750 C = 7218.536456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 H 0.071 0.929 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.528 3.472 7 O -0.570 6.570 8 C -0.185 4.185 9 C 0.472 3.528 10 F -0.185 7.185 11 F -0.177 7.177 12 F -0.188 7.188 13 C 0.078 3.922 14 C 0.170 3.830 15 H 0.072 0.928 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.083 0.917 19 C -0.069 4.069 20 N -0.968 5.968 21 Si 0.965 3.035 22 H -0.291 1.291 23 H -0.302 1.302 24 H -0.266 1.266 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.375 0.625 35 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -8.163 10.905 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 H 0.090 0.910 4 C -0.006 4.006 5 N -0.337 5.337 6 C 0.316 3.684 7 O -0.451 6.451 8 C -0.225 4.225 9 C 0.418 3.582 10 F -0.167 7.167 11 F -0.159 7.159 12 F -0.169 7.169 13 C -0.048 4.048 14 C 0.059 3.941 15 H 0.090 0.910 16 N -0.361 5.361 17 C -0.370 4.370 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.618 5.618 21 Si 0.795 3.205 22 H -0.219 1.219 23 H -0.229 1.229 24 H -0.190 1.190 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.185 0.815 31 H 0.176 0.824 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.207 0.793 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.604 -8.291 11.446 14.586 hybrid contribution 0.366 0.351 -0.953 1.080 sum 3.971 -7.940 10.493 13.744 Atomic orbital electron populations 1.21562 0.92434 1.02620 1.01976 1.22583 0.97446 0.98827 0.93567 0.91038 1.22331 0.82091 0.98802 0.97327 1.48422 1.12292 1.65117 1.07900 1.19835 0.85128 0.77607 0.85827 1.90780 1.83499 1.55315 1.15473 1.23000 0.91741 1.10359 0.97414 1.19945 0.80604 0.74167 0.83533 1.93190 1.86683 1.60606 1.76175 1.93207 1.45931 1.90813 1.85933 1.93191 1.95639 1.50274 1.77810 1.23183 1.02042 1.02321 0.77219 1.21509 0.92653 0.93748 0.86167 0.90967 1.42488 1.87077 1.05242 1.01299 1.19627 1.40396 0.92348 0.84582 0.89871 1.25463 1.03662 0.95719 1.01287 1.69803 1.58928 1.03613 1.29475 0.85261 0.77042 0.77683 0.80473 1.21888 1.22923 1.19048 0.91013 0.93442 0.91498 0.89697 0.90760 0.81494 0.82353 0.91451 0.89862 0.79253 0.94156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.31 71.98 0.67 -2.43 16 2 C -0.10 -2.86 3.26 -9.30 -0.03 -2.89 16 3 H 0.07 2.17 8.01 -2.38 -0.02 2.15 16 4 C 0.12 2.93 6.37 86.85 0.55 3.48 16 5 N -0.61 -15.96 3.33 -811.81 -2.70 -18.66 16 6 C 0.53 14.37 7.62 87.66 0.67 15.04 16 7 O -0.57 -19.52 15.09 -3.05 -0.05 -19.56 16 8 C -0.19 -3.64 4.94 29.85 0.15 -3.49 16 9 C 0.47 11.04 2.89 71.98 0.21 11.25 16 10 F -0.19 -4.94 16.40 44.97 0.74 -4.20 16 11 F -0.18 -3.79 17.32 44.97 0.78 -3.01 16 12 F -0.19 -5.22 16.40 44.97 0.74 -4.48 16 13 C 0.08 2.13 6.24 86.73 0.54 2.67 16 14 C 0.17 5.43 3.07 46.28 0.14 5.58 16 15 H 0.07 2.29 8.01 -2.39 -0.02 2.27 16 16 N -0.72 -31.20 5.18 -316.84 -1.64 -32.84 16 17 C -0.24 -11.56 9.98 84.04 0.84 -10.73 16 18 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 19 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 20 N -0.97 -55.21 13.06 21.65 0.28 -54.93 16 21 Si 0.97 42.59 29.55 68.60 2.03 44.62 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.45 8.12 -2.39 -0.02 1.43 16 28 H 0.08 1.90 8.04 -2.39 -0.02 1.88 16 29 H 0.07 1.92 8.03 -2.39 -0.02 1.90 16 30 H 0.17 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.16 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.07 2.03 8.03 -2.39 -0.02 2.01 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.38 18.00 7.72 -92.71 -0.72 17.29 16 35 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 Total: -1.00 -62.47 309.61 4.78 -57.69 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.40 Total: 20.02 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 4.20 Total: 15.36 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -4.06 Total: -106.43 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.05 Total: -19.56 kcal Atomic # 9 Polarization: -13.94 SS G_CDS: 2.25 Total: -11.69 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -62.47 4.78 -57.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054462769.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.745 kcal (2) G-P(sol) polarization free energy of solvation -62.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds