Wall clock time and date at job start Tue Mar 31 2020 01:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47678 * 2 1 4 4 O 1.21280 * 119.99539 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00308 * 180.02562 * 3 2 1 6 6 C 1.48252 * 127.89173 * 179.90413 * 5 3 2 7 7 C 1.54392 * 104.69305 * 219.51920 * 6 5 3 8 8 H 1.08998 * 110.43318 * 95.12936 * 7 6 5 9 9 C 1.53003 * 110.34154 * 217.33820 * 7 6 5 10 10 F 1.39898 * 109.47015 * 175.53529 * 9 7 6 11 11 F 1.39897 * 109.47297 * 295.53979 * 9 7 6 12 12 F 1.39906 * 109.46856 * 55.53864 * 9 7 6 13 13 C 1.54285 * 104.95996 * 336.20902 * 7 6 5 14 14 H 1.09000 * 110.34450 * 241.13158 * 13 7 6 15 15 N 1.46497 * 110.34280 * 118.87188 * 13 7 6 16 16 C 1.36931 * 120.00006 * 158.00821 * 15 13 7 17 17 H 1.07991 * 120.00169 * 0.02562 * 16 15 13 18 18 C 1.38820 * 119.99990 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99787 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99897 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47009 * 90.00280 * 20 18 16 22 22 H 1.48498 * 109.47135 * 209.99712 * 20 18 16 23 23 H 1.48490 * 109.47372 * 330.00163 * 20 18 16 24 24 C 1.48146 * 127.83808 * 0.02562 * 5 3 2 25 25 H 1.08994 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47039 * 300.00399 * 1 2 3 27 27 H 1.09002 * 109.46517 * 60.00451 * 1 2 3 28 28 H 1.09006 * 109.47414 * 239.99619 * 2 1 3 29 29 H 1.09003 * 109.47008 * 119.99744 * 2 1 3 30 30 H 1.09000 * 110.30697 * 100.74000 * 6 5 3 31 31 H 1.09004 * 110.53514 * 338.41199 * 6 5 3 32 32 H 0.97003 * 119.99570 * 338.01216 * 15 13 7 33 33 H 0.97003 * 119.99832 * 180.02562 * 19 18 16 34 34 H 1.09002 * 110.40776 * 21.63373 * 24 5 3 35 35 H 1.09002 * 110.40863 * 259.31781 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.0390 2.9836 -0.0026 7 6 5.2420 2.8004 -0.9528 8 1 4.9882 3.1383 -1.9575 9 6 6.4572 3.5665 -0.4261 10 9 7.5624 3.3066 -1.2435 11 9 6.1832 4.9383 -0.4346 12 9 6.7371 3.1549 0.8814 13 6 5.5227 1.2833 -0.9520 14 1 6.5263 1.0838 -0.5764 15 7 5.3645 0.7354 -2.3014 16 6 5.9771 -0.4420 -2.6384 17 1 6.5764 -0.9669 -1.9094 18 6 5.8276 -0.9609 -3.9173 19 7 5.0975 -0.3209 -4.8060 20 14 6.6638 -2.5667 -4.3773 21 1 5.7538 -3.7018 -4.0790 22 1 6.9869 -2.5590 -5.8266 23 1 7.9151 -2.7159 -3.5919 24 6 4.4647 0.6827 -0.0017 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.3821 3.2335 1.0014 31 1 3.3717 3.7589 -0.3792 32 1 4.8259 1.2067 -2.9561 33 1 4.9927 -0.6837 -5.6995 34 1 4.1177 -0.2793 -0.3787 35 1 4.8751 0.5711 1.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099192555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:04 Heat of formation + Delta-G solvation = -178.128810 kcal Electronic energy + Delta-G solvation = -23189.581890 eV Core-core repulsion = 19193.812080 eV Total energy + Delta-G solvation = -3995.769811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.92439 -47.43581 -47.33880 -39.80799 -37.64899 -34.09209 -32.77529 -31.81869 -30.58059 -27.63544 -26.22302 -24.39016 -23.49058 -22.09874 -20.37433 -19.12435 -18.33352 -18.02223 -17.78685 -16.86643 -16.70963 -15.55420 -15.37604 -14.89966 -14.37924 -14.30643 -14.07780 -13.82823 -13.71740 -13.58398 -13.50684 -13.39012 -13.34308 -12.72666 -12.28687 -12.12763 -11.91995 -11.67742 -11.57883 -11.25098 -11.01334 -10.95183 -10.91762 -10.85872 -10.22600 -9.90014 -9.64244 -9.22176 -8.54739 -7.20865 -5.94876 -3.27584 2.77131 2.91378 3.20699 3.33262 3.39651 3.41261 3.97021 4.07197 4.19788 4.45655 4.70905 4.87467 5.01458 5.20535 5.24185 5.29521 5.32634 5.45696 5.53117 5.64220 5.75805 5.89881 5.94055 6.00793 6.08878 6.12245 6.23232 6.32296 6.52863 7.53199 7.75695 8.20147 8.37459 9.33133 9.82248 10.17676 11.26470 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.008159 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.091868 B = 3430.923955 C = 5412.475869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.140 4.140 3 C 0.539 3.461 4 O -0.553 6.553 5 N -0.614 5.614 6 C 0.116 3.884 7 C -0.165 4.165 8 H 0.128 0.872 9 C 0.464 3.536 10 F -0.173 7.173 11 F -0.187 7.187 12 F -0.184 7.184 13 C 0.178 3.822 14 H 0.076 0.924 15 N -0.710 5.710 16 C -0.254 4.254 17 H 0.075 0.925 18 C -0.004 4.004 19 N -0.925 5.925 20 Si 0.909 3.091 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.072 3.928 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.387 0.613 33 H 0.258 0.742 34 H 0.096 0.904 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 3.689 10.901 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.180 4.180 3 C 0.329 3.671 4 O -0.432 6.432 5 N -0.348 5.348 6 C -0.007 4.007 7 C -0.187 4.187 8 H 0.146 0.854 9 C 0.409 3.591 10 F -0.154 7.154 11 F -0.169 7.169 12 F -0.165 7.165 13 C 0.066 3.934 14 H 0.094 0.906 15 N -0.351 5.351 16 C -0.385 4.385 17 H 0.093 0.907 18 C -0.201 4.201 19 N -0.572 5.572 20 Si 0.740 3.260 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.054 4.054 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.222 0.778 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.882 3.996 10.851 11.715 hybrid contribution 0.658 -0.588 -0.541 1.035 sum -1.223 3.408 10.310 10.927 Atomic orbital electron populations 1.21516 0.93277 1.01368 1.03004 1.21593 0.98037 0.93536 1.04806 1.20414 0.79808 0.91914 0.74965 1.90665 1.54403 1.46896 1.51194 1.48886 1.05078 1.07895 1.72894 1.22104 0.92327 0.87840 0.98457 1.23861 0.91799 0.99847 1.03157 0.85394 1.20306 0.85652 0.77603 0.75517 1.93234 1.56079 1.93683 1.72424 1.93169 1.93798 1.33554 1.96345 1.93152 1.94604 1.90146 1.38643 1.21037 0.97169 0.86360 0.88872 0.90618 1.42423 1.59773 1.26032 1.06848 1.19193 1.24871 0.98119 0.96279 0.90713 1.24784 1.00030 0.99097 0.96187 1.69663 1.42847 1.39753 1.04928 0.86171 0.79066 0.83148 0.77639 1.21531 1.21665 1.20541 1.23594 0.87798 0.94262 0.99713 0.92187 0.92366 0.92012 0.88064 0.89223 0.90459 0.88988 0.77786 0.93188 0.88576 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.20 37.16 0.34 -1.32 16 2 C -0.14 -1.88 5.40 -27.88 -0.15 -2.03 16 3 C 0.54 8.89 7.92 -10.99 -0.09 8.81 16 4 O -0.55 -10.68 16.26 5.56 0.09 -10.59 16 5 N -0.61 -9.58 3.32 -169.22 -0.56 -10.14 16 6 C 0.12 1.68 6.38 -2.35 -0.01 1.66 16 7 C -0.17 -2.52 2.84 -89.22 -0.25 -2.77 16 8 H 0.13 2.06 7.64 -51.93 -0.40 1.66 16 9 C 0.46 6.77 2.53 37.16 0.09 6.86 16 10 F -0.17 -2.86 16.93 2.25 0.04 -2.83 16 11 F -0.19 -2.64 17.17 2.25 0.04 -2.60 16 12 F -0.18 -2.56 16.04 2.25 0.04 -2.52 16 13 C 0.18 3.10 2.99 -66.54 -0.20 2.90 16 14 H 0.08 1.33 7.37 -51.93 -0.38 0.95 16 15 N -0.71 -15.84 5.14 -52.08 -0.27 -16.11 16 16 C -0.25 -6.36 9.97 -15.06 -0.15 -6.51 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 19 N -0.93 -26.20 13.06 55.49 0.72 -25.48 16 20 Si 0.91 20.98 29.55 -169.99 -5.02 15.96 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.07 1.10 6.62 -2.42 -0.02 1.08 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 27 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 28 H 0.10 1.43 7.95 -51.93 -0.41 1.02 16 29 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.00 7.21 -51.93 -0.37 0.62 16 31 H 0.09 1.35 7.89 -51.93 -0.41 0.94 16 32 H 0.39 9.45 7.50 -40.82 -0.31 9.14 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.10 1.56 7.22 -51.93 -0.37 1.19 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -28.99 307.69 -5.13 -34.12 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.31 Total: 7.06 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -0.53 Total: 8.49 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.11 Total: -51.73 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 0.11 Total: -7.95 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.99 -5.13 -34.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099192555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.006 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds