Wall clock time and date at job start Tue Mar 31 2020 01:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47678 * 2 1 4 4 O 1.21280 * 119.99539 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00308 * 180.02562 * 3 2 1 6 6 C 1.48252 * 127.89173 * 179.90413 * 5 3 2 7 7 C 1.54392 * 104.69305 * 219.51920 * 6 5 3 8 8 H 1.08998 * 110.43318 * 95.12936 * 7 6 5 9 9 C 1.53003 * 110.34154 * 217.33820 * 7 6 5 10 10 F 1.39898 * 109.47015 * 175.53529 * 9 7 6 11 11 F 1.39897 * 109.47297 * 295.53979 * 9 7 6 12 12 F 1.39906 * 109.46856 * 55.53864 * 9 7 6 13 13 C 1.54285 * 104.95996 * 336.20902 * 7 6 5 14 14 H 1.09000 * 110.34450 * 241.13158 * 13 7 6 15 15 N 1.46497 * 110.34280 * 118.87188 * 13 7 6 16 16 C 1.36931 * 120.00006 * 158.00821 * 15 13 7 17 17 H 1.07991 * 120.00169 * 0.02562 * 16 15 13 18 18 C 1.38820 * 119.99990 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99787 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99897 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47009 * 90.00280 * 20 18 16 22 22 H 1.48498 * 109.47135 * 209.99712 * 20 18 16 23 23 H 1.48490 * 109.47372 * 330.00163 * 20 18 16 24 24 C 1.48146 * 127.83808 * 0.02562 * 5 3 2 25 25 H 1.08994 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47039 * 300.00399 * 1 2 3 27 27 H 1.09002 * 109.46517 * 60.00451 * 1 2 3 28 28 H 1.09006 * 109.47414 * 239.99619 * 2 1 3 29 29 H 1.09003 * 109.47008 * 119.99744 * 2 1 3 30 30 H 1.09000 * 110.30697 * 100.74000 * 6 5 3 31 31 H 1.09004 * 110.53514 * 338.41199 * 6 5 3 32 32 H 0.97003 * 119.99570 * 338.01216 * 15 13 7 33 33 H 0.97003 * 119.99832 * 180.02562 * 19 18 16 34 34 H 1.09002 * 110.40776 * 21.63373 * 24 5 3 35 35 H 1.09002 * 110.40863 * 259.31781 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.0390 2.9836 -0.0026 7 6 5.2420 2.8004 -0.9528 8 1 4.9882 3.1383 -1.9575 9 6 6.4572 3.5665 -0.4261 10 9 7.5624 3.3066 -1.2435 11 9 6.1832 4.9383 -0.4346 12 9 6.7371 3.1549 0.8814 13 6 5.5227 1.2833 -0.9520 14 1 6.5263 1.0838 -0.5764 15 7 5.3645 0.7354 -2.3014 16 6 5.9771 -0.4420 -2.6384 17 1 6.5764 -0.9669 -1.9094 18 6 5.8276 -0.9609 -3.9173 19 7 5.0975 -0.3209 -4.8060 20 14 6.6638 -2.5667 -4.3773 21 1 5.7538 -3.7018 -4.0790 22 1 6.9869 -2.5590 -5.8266 23 1 7.9151 -2.7159 -3.5919 24 6 4.4647 0.6827 -0.0017 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.3821 3.2335 1.0014 31 1 3.3717 3.7589 -0.3792 32 1 4.8259 1.2067 -2.9561 33 1 4.9927 -0.6837 -5.6995 34 1 4.1177 -0.2793 -0.3787 35 1 4.8751 0.5711 1.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099192555.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:50:04 Heat of formation + Delta-G solvation = -196.078748 kcal Electronic energy + Delta-G solvation = -23190.360258 eV Core-core repulsion = 19193.812080 eV Total energy + Delta-G solvation = -3996.548179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.13102 -48.60539 -48.58349 -41.10232 -39.01546 -35.80993 -33.98323 -33.25189 -32.13413 -29.12219 -27.40903 -26.05931 -24.74603 -23.44172 -21.72580 -20.39273 -19.59277 -19.41139 -19.14587 -18.33975 -18.03775 -16.87629 -16.75801 -16.35949 -15.76759 -15.51994 -15.39906 -15.17937 -15.04542 -14.98447 -14.86727 -14.72590 -14.60863 -14.01126 -13.57563 -13.35291 -13.18667 -13.04552 -12.88756 -12.66707 -12.62464 -12.42037 -12.23900 -12.06527 -12.03687 -11.75238 -11.11275 -10.89733 -9.89989 -9.03882 -7.94205 -5.25073 1.50646 1.52271 1.53363 1.60770 1.66612 1.99436 2.54764 2.76204 2.82537 2.97674 3.37986 3.50680 3.67902 3.81436 3.88587 4.00906 4.19772 4.21599 4.25728 4.49331 4.53103 4.66279 4.73925 4.81756 4.93875 4.99140 5.07109 5.20728 5.34012 5.55764 6.24104 6.49404 7.09938 7.33002 7.99551 8.24235 9.28314 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.011104 B = 0.008159 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.091868 B = 3430.923955 C = 5412.475869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.135 4.135 3 C 0.530 3.470 4 O -0.587 6.587 5 N -0.616 5.616 6 C 0.118 3.882 7 C -0.157 4.157 8 H 0.116 0.884 9 C 0.473 3.527 10 F -0.185 7.185 11 F -0.182 7.182 12 F -0.175 7.175 13 C 0.172 3.828 14 H 0.081 0.919 15 N -0.722 5.722 16 C -0.240 4.240 17 H 0.087 0.913 18 C -0.067 4.067 19 N -0.966 5.966 20 Si 0.968 3.032 21 H -0.286 1.286 22 H -0.304 1.304 23 H -0.268 1.268 24 C 0.083 3.917 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.374 0.626 33 H 0.250 0.750 34 H 0.088 0.912 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.931 3.009 12.897 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.322 3.678 4 O -0.468 6.468 5 N -0.348 5.348 6 C -0.005 4.005 7 C -0.178 4.178 8 H 0.134 0.866 9 C 0.418 3.582 10 F -0.166 7.166 11 F -0.163 7.163 12 F -0.156 7.156 13 C 0.061 3.939 14 H 0.098 0.902 15 N -0.362 5.362 16 C -0.371 4.371 17 H 0.105 0.895 18 C -0.260 4.260 19 N -0.616 5.616 20 Si 0.798 3.202 21 H -0.213 1.213 22 H -0.231 1.231 23 H -0.192 1.192 24 C -0.043 4.043 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.206 0.794 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.307 3.315 12.915 13.398 hybrid contribution 0.518 -0.296 -1.071 1.226 sum -0.790 3.019 11.844 12.248 Atomic orbital electron populations 1.21510 0.92640 1.02700 1.02019 1.21642 0.98585 0.91606 1.05655 1.21012 0.79746 0.92833 0.74228 1.90646 1.55185 1.48136 1.52822 1.48970 1.05097 1.08421 1.72360 1.22188 0.91642 0.87417 0.99295 1.23694 0.92592 0.98504 1.03059 0.86587 1.20072 0.84826 0.77702 0.75597 1.93216 1.56680 1.93802 1.72935 1.93184 1.93707 1.33103 1.96331 1.93171 1.94503 1.90080 1.37892 1.21242 0.98107 0.87549 0.86965 0.90167 1.42549 1.59490 1.25521 1.08628 1.19592 1.23148 0.98315 0.96021 0.89538 1.25496 1.01628 1.02180 0.96678 1.69815 1.45357 1.41461 1.04951 0.85225 0.78554 0.79976 0.76481 1.21318 1.23095 1.19237 1.23451 0.86746 0.93369 1.00686 0.89663 0.92399 0.93952 0.88873 0.86406 0.88165 0.89415 0.79383 0.94141 0.89372 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.20 71.98 0.66 -2.41 16 2 C -0.14 -3.39 5.40 29.85 0.16 -3.23 16 3 C 0.53 16.86 7.92 87.66 0.69 17.55 16 4 O -0.59 -22.40 16.26 -3.03 -0.05 -22.45 16 5 N -0.62 -18.06 3.32 -807.69 -2.68 -20.74 16 6 C 0.12 3.17 6.38 86.51 0.55 3.72 16 7 C -0.16 -4.57 2.84 -9.88 -0.03 -4.60 16 8 H 0.12 3.72 7.64 -2.39 -0.02 3.70 16 9 C 0.47 12.89 2.53 71.98 0.18 13.08 16 10 F -0.18 -5.88 16.93 44.97 0.76 -5.12 16 11 F -0.18 -4.79 17.17 44.97 0.77 -4.02 16 12 F -0.18 -4.36 16.04 44.97 0.72 -3.64 16 13 C 0.17 5.67 2.99 45.89 0.14 5.81 16 14 H 0.08 2.61 7.37 -2.39 -0.02 2.59 16 15 N -0.72 -31.85 5.14 -318.68 -1.64 -33.48 16 16 C -0.24 -11.76 9.97 84.04 0.84 -10.92 16 17 H 0.09 3.97 7.83 -2.92 -0.02 3.95 16 18 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16 19 N -0.97 -55.74 13.06 21.65 0.28 -55.46 16 20 Si 0.97 43.06 29.55 68.60 2.03 45.08 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 C 0.08 2.29 6.62 86.53 0.57 2.87 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 27 H 0.04 1.14 8.10 -2.39 -0.02 1.12 16 28 H 0.09 2.52 7.95 -2.38 -0.02 2.51 16 29 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.10 2.27 7.21 -2.39 -0.02 2.25 16 31 H 0.09 2.48 7.89 -2.39 -0.02 2.46 16 32 H 0.37 18.46 7.50 -92.71 -0.70 17.76 16 33 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.09 2.65 7.22 -2.39 -0.02 2.64 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -61.82 307.69 4.86 -56.96 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.43 Total: 24.07 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 4.24 Total: 18.79 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -4.04 Total: -109.69 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.05 Total: -22.45 kcal Atomic # 9 Polarization: -15.02 SS G_CDS: 2.25 Total: -12.77 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -61.82 4.86 -56.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099192555.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.121 kcal (2) G-P(sol) polarization free energy of solvation -61.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds