Wall clock time and date at job start Tue Mar 31 2020 02:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46910 * 109.47018 * 2 1 4 4 C 1.46904 * 111.00083 * 196.41340 * 3 2 1 5 5 C 1.50699 * 109.47142 * 66.04846 * 4 3 2 6 6 H 1.08005 * 119.99595 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00342 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99538 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00452 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47023 * 59.99431 * 9 7 5 11 11 H 1.48496 * 109.47138 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47124 * 299.99963 * 9 7 5 13 13 C 1.46898 * 110.99593 * 72.46149 * 3 2 1 14 14 C 1.50705 * 109.46935 * 199.47352 * 13 3 2 15 15 C 1.38309 * 119.80863 * 263.89973 * 14 13 3 16 16 C 1.38202 * 120.19246 * 179.72594 * 15 14 13 17 17 F 1.35097 * 120.09911 * 180.27186 * 16 15 14 18 18 C 1.39918 * 119.80502 * 0.51958 * 16 15 14 19 19 C 1.43194 * 120.19007 * 179.72869 * 18 16 15 20 20 N 8.86369 * 93.37330 * 3.95838 * 2 1 3 21 21 C 1.39921 * 119.61858 * 359.75443 * 18 16 15 22 22 F 1.35097 * 120.09631 * 179.97438 * 21 18 16 23 23 C 1.38198 * 119.80628 * 359.97438 * 21 18 16 24 24 H 1.08997 * 109.46879 * 61.23316 * 1 2 3 25 25 H 1.08999 * 109.46832 * 181.22990 * 1 2 3 26 26 H 1.08999 * 109.46747 * 301.23473 * 1 2 3 27 27 H 1.09005 * 109.47280 * 240.00759 * 2 1 3 28 28 H 1.08994 * 109.47610 * 120.00333 * 2 1 3 29 29 H 1.09002 * 109.47148 * 186.04677 * 4 3 2 30 30 H 1.08997 * 109.47176 * 306.04852 * 4 3 2 31 31 H 0.97006 * 119.99944 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47068 * 319.47372 * 13 3 2 33 33 H 1.08996 * 109.47184 * 79.47623 * 13 3 2 34 34 H 1.08007 * 119.90448 * 359.97269 * 15 14 13 35 35 H 1.08004 * 119.90832 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4355 1.4430 -0.3875 5 6 3.5812 1.0113 -1.8240 6 1 2.7092 0.7224 -2.3921 7 6 4.8276 0.9841 -2.4127 8 7 5.8895 1.3344 -1.7204 9 14 5.0083 0.4483 -4.1930 10 1 4.2192 1.3548 -5.0652 11 1 6.4395 0.5069 -4.5848 12 1 4.5097 -0.9423 -4.3445 13 6 1.8055 2.0191 1.3077 14 6 1.8596 3.5173 1.1544 15 6 3.0387 4.1927 1.4126 16 6 3.0988 5.5659 1.2692 17 9 4.2529 6.2231 1.5166 18 6 1.9594 6.2742 0.8720 19 6 2.0108 7.6978 0.7263 20 7 2.0516 8.8272 0.6108 21 6 0.7692 5.5835 0.6184 22 9 -0.3368 6.2578 0.2348 23 6 0.7285 4.2096 0.7614 24 1 -0.3633 0.4946 -0.9008 25 1 -0.3633 -1.0274 0.0221 26 1 -0.3633 0.5329 0.8787 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.8013 2.4637 -0.2760 30 1 4.0148 0.7774 0.2524 31 1 6.7664 1.3157 -2.1347 32 1 0.8296 1.7287 1.6968 33 1 2.5832 1.6963 1.9997 34 1 3.9161 3.6449 1.7235 35 1 -0.1894 3.6748 0.5665 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140754103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:44 Heat of formation + Delta-G solvation = -34.020461 kcal Electronic energy + Delta-G solvation = -21246.666135 eV Core-core repulsion = 17687.914555 eV Total energy + Delta-G solvation = -3558.751579 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.17650 -49.09971 -39.40099 -37.16260 -36.28839 -32.80939 -32.16199 -30.53832 -29.91047 -27.75730 -25.37257 -23.12912 -22.55013 -22.40965 -20.00780 -19.36871 -17.60964 -17.49861 -16.50308 -16.20942 -15.81578 -15.41103 -15.18372 -14.98690 -14.58833 -14.43697 -13.96164 -13.70786 -13.62332 -13.26065 -13.00792 -12.85441 -12.48385 -12.16247 -11.85852 -11.80135 -11.70522 -11.50799 -11.22554 -11.01892 -10.79845 -10.58176 -10.28147 -9.92848 -9.31675 -8.94102 -8.82139 -8.50273 -7.47345 -6.10383 -4.11631 0.42262 0.93578 2.50310 2.75359 3.29261 3.34526 3.36701 3.43283 3.58433 3.66904 4.21533 4.36887 4.51206 4.73814 4.92459 5.09924 5.26191 5.39248 5.50231 5.58916 5.61655 5.69099 5.81409 5.86112 5.94526 5.97683 6.23739 6.35682 6.56849 6.59819 6.66092 7.13256 7.19635 7.33541 7.68645 7.93279 8.04669 8.39949 8.94945 9.53003 11.00345 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.005508 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.309385 B = 5082.069040 C = 6006.914213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 N -0.531 5.531 4 C 0.188 3.812 5 C -0.510 4.510 6 H 0.063 0.937 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.078 3.922 14 C 0.031 3.969 15 C -0.148 4.148 16 C 0.178 3.822 17 F -0.120 7.120 18 C -0.112 4.112 19 C 0.260 3.740 20 N -0.405 5.405 21 C 0.172 3.828 22 F -0.123 7.123 23 C -0.143 4.143 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.021 0.979 29 H 0.036 0.964 30 H -0.007 1.007 31 H 0.263 0.737 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.155 0.845 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.571 1.662 8.426 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 N -0.256 5.256 4 C 0.063 3.937 5 C -0.549 4.549 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.050 4.050 14 C 0.030 3.970 15 C -0.167 4.167 16 C 0.156 3.844 17 F -0.099 7.099 18 C -0.118 4.118 19 C -0.056 4.056 20 N -0.080 5.080 21 C 0.150 3.850 22 F -0.102 7.102 23 C -0.162 4.162 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.011 0.989 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.172 0.828 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.564 3.736 7.871 12.938 hybrid contribution 0.832 -0.828 -0.499 1.276 sum -8.732 2.908 7.373 11.792 Atomic orbital electron populations 1.21837 0.96498 1.00418 1.01668 1.21996 0.94134 0.89632 1.01400 1.62181 1.23843 1.16528 1.23011 1.19856 0.80469 0.97296 0.96076 1.21072 0.92905 1.44546 0.96361 0.91844 1.24954 0.95833 0.95481 0.98106 1.69925 0.98681 1.48231 1.36754 0.86590 0.76951 0.79159 0.84914 1.20160 1.21360 1.20251 1.21184 1.01896 0.88393 0.93480 1.19786 0.90680 0.96738 0.89831 1.21189 1.00359 0.91213 1.03955 1.17196 0.80221 0.89865 0.97085 1.91569 1.46183 1.81087 1.91024 1.15805 0.94727 0.85769 1.15477 1.25020 0.94501 0.92045 0.93988 1.81191 1.06459 1.11603 1.08782 1.17194 0.81070 0.89754 0.96958 1.91552 1.50263 1.80346 1.88001 1.20961 1.01334 0.90648 1.03261 0.92131 0.93245 0.93585 0.89210 0.96064 0.94605 0.98927 0.92783 0.89782 0.93422 0.82758 0.82922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.00 37.16 0.37 -1.49 16 2 C 0.06 0.91 5.52 -3.82 -0.02 0.89 16 3 N -0.53 -9.50 4.37 -237.51 -1.04 -10.53 16 4 C 0.19 4.30 4.55 -4.97 -0.02 4.27 16 5 C -0.51 -13.22 8.28 -34.44 -0.29 -13.50 16 6 H 0.06 1.63 7.26 -52.48 -0.38 1.25 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.23 13.29 55.43 0.74 -24.50 16 9 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.08 1.08 4.95 -4.97 -0.02 1.05 16 14 C 0.03 0.42 5.02 -104.57 -0.53 -0.11 16 15 C -0.15 -2.03 8.36 -39.57 -0.33 -2.36 16 16 C 0.18 2.50 7.28 -38.97 -0.28 2.22 16 17 F -0.12 -1.79 16.81 2.25 0.04 -1.76 16 18 C -0.11 -1.55 5.75 -106.71 -0.61 -2.17 16 19 C 0.26 3.97 14.63 -22.48 -0.33 3.64 16 20 N -0.41 -6.76 18.54 41.84 0.78 -5.98 16 21 C 0.17 2.21 7.28 -38.97 -0.28 1.92 16 22 F -0.12 -1.61 16.81 2.25 0.04 -1.57 16 23 C -0.14 -1.72 9.68 -39.57 -0.38 -2.10 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.50 6.53 -51.93 -0.34 0.17 16 27 H 0.09 1.68 6.58 -51.93 -0.34 1.34 16 28 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 29 H 0.04 0.86 6.35 -51.93 -0.33 0.53 16 30 H -0.01 -0.17 8.12 -51.93 -0.42 -0.60 16 31 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.08 0.94 6.24 -51.93 -0.32 0.61 16 33 H 0.05 0.65 7.90 -51.93 -0.41 0.24 16 34 H 0.15 2.09 8.01 -52.48 -0.42 1.66 16 35 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -28.40 315.11 -6.34 -34.73 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: -3.79 Total: -4.66 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.83 Total: -6.26 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.47 Total: -41.02 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.08 Total: -3.33 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.40 -6.34 -34.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140754103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.714 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds