Wall clock time and date at job start Tue Mar 31 2020 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46910 * 109.47018 * 2 1 4 4 C 1.46904 * 111.00083 * 196.41340 * 3 2 1 5 5 C 1.50699 * 109.47142 * 66.04846 * 4 3 2 6 6 H 1.08005 * 119.99595 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00342 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99538 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00452 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47023 * 59.99431 * 9 7 5 11 11 H 1.48496 * 109.47138 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47124 * 299.99963 * 9 7 5 13 13 C 1.46898 * 110.99593 * 72.46149 * 3 2 1 14 14 C 1.50705 * 109.46935 * 199.47352 * 13 3 2 15 15 C 1.38309 * 119.80863 * 263.89973 * 14 13 3 16 16 C 1.38202 * 120.19246 * 179.72594 * 15 14 13 17 17 F 1.35097 * 120.09911 * 180.27186 * 16 15 14 18 18 C 1.39918 * 119.80502 * 0.51958 * 16 15 14 19 19 C 1.43194 * 120.19007 * 179.72869 * 18 16 15 20 20 N 8.86369 * 93.37330 * 3.95838 * 2 1 3 21 21 C 1.39921 * 119.61858 * 359.75443 * 18 16 15 22 22 F 1.35097 * 120.09631 * 179.97438 * 21 18 16 23 23 C 1.38198 * 119.80628 * 359.97438 * 21 18 16 24 24 H 1.08997 * 109.46879 * 61.23316 * 1 2 3 25 25 H 1.08999 * 109.46832 * 181.22990 * 1 2 3 26 26 H 1.08999 * 109.46747 * 301.23473 * 1 2 3 27 27 H 1.09005 * 109.47280 * 240.00759 * 2 1 3 28 28 H 1.08994 * 109.47610 * 120.00333 * 2 1 3 29 29 H 1.09002 * 109.47148 * 186.04677 * 4 3 2 30 30 H 1.08997 * 109.47176 * 306.04852 * 4 3 2 31 31 H 0.97006 * 119.99944 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47068 * 319.47372 * 13 3 2 33 33 H 1.08996 * 109.47184 * 79.47623 * 13 3 2 34 34 H 1.08007 * 119.90448 * 359.97269 * 15 14 13 35 35 H 1.08004 * 119.90832 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4355 1.4430 -0.3875 5 6 3.5812 1.0113 -1.8240 6 1 2.7092 0.7224 -2.3921 7 6 4.8276 0.9841 -2.4127 8 7 5.8895 1.3344 -1.7204 9 14 5.0083 0.4483 -4.1930 10 1 4.2192 1.3548 -5.0652 11 1 6.4395 0.5069 -4.5848 12 1 4.5097 -0.9423 -4.3445 13 6 1.8055 2.0191 1.3077 14 6 1.8596 3.5173 1.1544 15 6 3.0387 4.1927 1.4126 16 6 3.0988 5.5659 1.2692 17 9 4.2529 6.2231 1.5166 18 6 1.9594 6.2742 0.8720 19 6 2.0108 7.6978 0.7263 20 7 2.0516 8.8272 0.6108 21 6 0.7692 5.5835 0.6184 22 9 -0.3368 6.2578 0.2348 23 6 0.7285 4.2096 0.7614 24 1 -0.3633 0.4946 -0.9008 25 1 -0.3633 -1.0274 0.0221 26 1 -0.3633 0.5329 0.8787 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.8013 2.4637 -0.2760 30 1 4.0148 0.7774 0.2524 31 1 6.7664 1.3157 -2.1347 32 1 0.8296 1.7287 1.6968 33 1 2.5832 1.6963 1.9997 34 1 3.9161 3.6449 1.7235 35 1 -0.1894 3.6748 0.5665 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140754103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:43 Heat of formation + Delta-G solvation = -49.397408 kcal Electronic energy + Delta-G solvation = -21247.332929 eV Core-core repulsion = 17687.914555 eV Total energy + Delta-G solvation = -3559.418374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.25877 -50.21170 -40.51812 -38.48220 -37.57200 -34.73239 -33.32445 -31.63858 -31.21896 -29.26955 -26.84958 -24.39889 -23.95948 -23.61058 -21.37100 -20.49853 -18.78724 -18.62042 -18.32117 -17.32629 -16.98679 -16.68150 -16.50924 -16.17456 -15.97044 -15.83895 -15.34308 -14.96863 -14.86350 -14.47670 -14.20833 -14.09757 -13.96403 -13.79303 -13.08847 -12.96274 -12.89827 -12.70082 -12.66368 -12.51121 -12.39458 -12.22804 -11.73375 -11.47768 -11.15774 -10.53421 -10.06970 -9.87522 -8.93975 -8.14284 -6.20940 -0.68807 -0.11302 1.28704 1.44486 1.46135 1.53063 1.59688 2.30224 2.44295 2.47012 2.54369 3.14610 3.20197 3.38314 3.61958 3.67677 4.06982 4.32544 4.41390 4.48103 4.53187 4.59763 4.72484 4.75464 4.88709 4.92243 5.17712 5.23602 5.31054 5.34665 5.49279 5.54027 5.61237 5.73642 6.12348 6.15516 6.42399 6.70977 6.95737 7.47909 8.95753 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.005508 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.309385 B = 5082.069040 C = 6006.914213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.054 3.946 3 N -0.536 5.536 4 C 0.202 3.798 5 C -0.517 4.517 6 H 0.062 0.938 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.079 3.921 14 C 0.027 3.973 15 C -0.151 4.151 16 C 0.171 3.829 17 F -0.130 7.130 18 C -0.115 4.115 19 C 0.271 3.729 20 N -0.434 5.434 21 C 0.178 3.822 22 F -0.122 7.122 23 C -0.125 4.125 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.027 0.973 29 H 0.021 0.979 30 H -0.035 1.035 31 H 0.261 0.739 32 H 0.122 0.878 33 H 0.049 0.951 34 H 0.150 0.850 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 0.858 8.472 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.074 4.074 3 N -0.260 5.260 4 C 0.075 3.925 5 C -0.556 4.556 6 H 0.080 0.920 7 C -0.192 4.192 8 N -0.572 5.572 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.192 1.192 13 C -0.049 4.049 14 C 0.025 3.975 15 C -0.170 4.170 16 C 0.149 3.851 17 F -0.108 7.108 18 C -0.121 4.121 19 C -0.044 4.044 20 N -0.109 5.109 21 C 0.156 3.844 22 F -0.100 7.100 23 C -0.144 4.144 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.039 0.961 30 H -0.017 1.017 31 H 0.070 0.930 32 H 0.140 0.860 33 H 0.067 0.933 34 H 0.168 0.832 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -11.737 2.925 7.923 14.459 hybrid contribution 1.456 -0.608 -0.460 1.644 sum -10.280 2.317 7.463 12.913 Atomic orbital electron populations 1.21747 0.93080 1.01968 1.02504 1.22028 0.96808 0.88424 1.00133 1.62064 1.20190 1.17849 1.25900 1.19492 0.83354 0.95381 0.94243 1.21464 0.92717 1.43514 0.97882 0.92007 1.25730 0.95777 0.95843 1.01871 1.70043 0.98998 1.49843 1.38320 0.85659 0.76700 0.79145 0.80478 1.19815 1.21475 1.19244 1.21309 1.03991 0.88145 0.91426 1.19814 0.90856 0.96625 0.90225 1.21233 1.00714 0.91094 1.04009 1.17227 0.80076 0.89982 0.97804 1.91545 1.46742 1.81275 1.91224 1.15857 0.95247 0.85024 1.15971 1.25231 0.93668 0.92285 0.93189 1.81194 1.07391 1.12444 1.09906 1.17184 0.80586 0.90001 0.96653 1.91563 1.50082 1.80419 1.87937 1.21176 1.01805 0.90112 1.01328 0.92779 0.91523 0.91069 0.92463 0.95483 0.96115 1.01705 0.93000 0.86013 0.93310 0.83206 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 10.00 71.98 0.72 -2.22 16 2 C 0.05 1.65 5.52 86.30 0.48 2.13 16 3 N -0.54 -18.33 4.37 -905.34 -3.96 -22.29 16 4 C 0.20 9.29 4.55 85.56 0.39 9.68 16 5 C -0.52 -26.92 8.28 25.60 0.21 -26.71 16 6 H 0.06 3.17 7.26 -2.91 -0.02 3.15 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -53.37 13.29 21.45 0.28 -53.08 16 9 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 C 0.08 1.95 4.95 85.56 0.42 2.38 16 14 C 0.03 0.65 5.02 -19.83 -0.10 0.55 16 15 C -0.15 -4.05 8.36 22.28 0.19 -3.87 16 16 C 0.17 4.74 7.28 22.67 0.16 4.90 16 17 F -0.13 -3.91 16.81 44.97 0.76 -3.15 16 18 C -0.12 -3.08 5.75 -21.22 -0.12 -3.20 16 19 C 0.27 8.15 14.63 88.33 1.29 9.44 16 20 N -0.43 -14.38 18.54 19.00 0.35 -14.03 16 21 C 0.18 4.16 7.28 22.67 0.16 4.32 16 22 F -0.12 -2.88 16.81 44.97 0.76 -2.12 16 23 C -0.13 -2.61 9.68 22.28 0.22 -2.39 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.19 6.53 -2.39 -0.02 1.18 16 27 H 0.06 2.12 6.58 -2.38 -0.02 2.10 16 28 H 0.03 0.79 8.05 -2.39 -0.02 0.77 16 29 H 0.02 1.02 6.35 -2.39 -0.02 1.00 16 30 H -0.03 -1.77 8.12 -2.39 -0.02 -1.79 16 31 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 32 H 0.12 2.13 6.24 -2.39 -0.01 2.12 16 33 H 0.05 1.24 7.90 -2.39 -0.02 1.22 16 34 H 0.15 4.12 8.01 -2.91 -0.02 4.09 16 35 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -61.54 315.11 5.83 -55.71 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: 1.12 Total: -1.57 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 4.49 Total: -4.21 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -3.32 Total: -89.40 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 1.51 Total: -5.27 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -61.54 5.83 -55.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140754103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.314 kcal (2) G-P(sol) polarization free energy of solvation -61.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds