Wall clock time and date at job start Tue Mar 31 2020 02:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46734 * 2 1 4 4 C 1.46896 * 110.99584 * 196.33151 * 3 2 1 5 5 C 1.50700 * 109.47064 * 66.05160 * 4 3 2 6 6 H 1.08003 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00220 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99720 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99888 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46644 * 119.99705 * 9 7 5 12 12 H 1.48494 * 109.46957 * 239.99479 * 9 7 5 13 13 C 1.46904 * 111.00128 * 72.38339 * 3 2 1 14 14 C 1.50695 * 109.47011 * 200.19083 * 13 3 2 15 15 C 1.38548 * 119.94969 * 82.93356 * 14 13 3 16 16 F 1.35097 * 119.85313 * 0.02562 * 15 14 13 17 17 C 1.38688 * 120.29194 * 179.97438 * 15 14 13 18 18 C 1.37810 * 120.19250 * 359.97438 * 17 15 14 19 19 C 1.39707 * 119.89579 * 0.02562 * 18 17 15 20 20 C 1.43206 * 120.14235 * 180.02562 * 19 18 17 21 21 N 8.01422 * 117.18548 * 14.39970 * 2 1 3 22 22 C 1.38133 * 119.95224 * 262.65869 * 14 13 3 23 23 F 1.35109 * 120.09438 * 359.97438 * 22 14 13 24 24 H 1.09000 * 109.47335 * 59.28674 * 1 2 3 25 25 H 1.08997 * 109.47127 * 179.28625 * 1 2 3 26 26 H 1.08999 * 109.47593 * 299.28513 * 1 2 3 27 27 H 1.08993 * 109.46984 * 239.99857 * 2 1 3 28 28 H 1.09003 * 109.46776 * 119.99830 * 2 1 3 29 29 H 1.09002 * 109.47112 * 186.04590 * 4 3 2 30 30 H 1.08994 * 109.47621 * 306.04998 * 4 3 2 31 31 H 0.97002 * 119.99804 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47053 * 320.19045 * 13 3 2 33 33 H 1.09001 * 109.47242 * 80.18944 * 13 3 2 34 34 H 1.07999 * 119.90149 * 180.02562 * 17 15 14 35 35 H 1.08001 * 120.05455 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4359 1.4426 -0.3856 5 6 3.5834 1.0103 -1.8217 6 1 2.7122 0.7212 -2.3909 7 6 4.8307 0.9828 -2.4088 8 7 5.8916 1.3343 -1.7156 9 14 5.0136 0.4461 -4.1887 10 1 3.6789 0.1034 -4.7420 11 1 5.6090 1.5524 -4.9804 12 1 5.8984 -0.7444 -4.2583 13 6 1.8037 2.0197 1.3071 14 6 1.8405 3.5180 1.1502 15 6 0.7069 4.1981 0.7354 16 9 -0.4288 3.5151 0.4733 17 6 0.7327 5.5770 0.5891 18 6 1.8870 6.2808 0.8561 19 6 3.0347 5.6031 1.2748 20 6 4.2369 6.3293 1.5542 21 7 5.1915 6.9050 1.7729 22 6 3.0027 4.2120 1.4255 23 9 4.1063 3.5494 1.8359 24 1 -0.3634 0.5249 -0.8835 25 1 -0.3633 -1.0276 -0.0128 26 1 -0.3634 0.5027 0.8963 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8015 2.4634 -0.2742 30 1 4.0144 0.7775 0.2553 31 1 6.7691 1.3146 -2.1284 32 1 0.8327 1.7194 1.7010 33 1 2.5879 1.7073 1.9967 34 1 -0.1548 6.1008 0.2657 35 1 1.9044 7.3546 0.7418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143171029.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:46 Heat of formation + Delta-G solvation = -31.750339 kcal Electronic energy + Delta-G solvation = -21852.817093 eV Core-core repulsion = 18294.163954 eV Total energy + Delta-G solvation = -3558.653139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.92464 -48.91430 -39.19182 -37.12444 -36.20104 -32.76847 -32.10079 -30.74406 -29.76701 -27.32848 -24.97572 -23.85950 -22.40175 -22.21243 -20.10988 -18.54533 -18.05411 -17.46362 -16.46683 -15.99184 -15.71323 -15.18171 -15.03522 -14.55788 -14.33583 -14.26136 -14.03721 -13.68276 -13.59958 -13.22451 -12.96903 -12.54662 -12.39450 -12.20426 -12.11137 -11.73719 -11.55435 -11.32635 -11.13510 -10.97577 -10.69386 -10.53194 -10.19705 -9.87225 -9.22662 -8.85784 -8.74242 -8.45234 -7.36675 -6.02927 -4.04848 0.49572 0.96149 2.64101 2.75520 3.30301 3.38070 3.42260 3.55549 3.77204 3.89903 4.26742 4.41671 4.50403 4.69826 4.86509 5.09803 5.32414 5.40878 5.56840 5.69262 5.76250 5.81687 5.88792 5.90192 5.96170 6.03626 6.10317 6.34303 6.61251 6.67790 6.76347 7.22839 7.31803 7.47503 7.76594 8.02543 8.13897 8.48425 9.02816 9.59341 11.07534 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.007120 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.963055 B = 3931.565434 C = 5195.699121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 N -0.530 5.530 4 C 0.191 3.809 5 C -0.509 4.509 6 H 0.065 0.935 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.086 3.914 14 C -0.134 4.134 15 C 0.181 3.819 16 F -0.117 7.117 17 C -0.172 4.172 18 C -0.020 4.020 19 C -0.080 4.080 20 C 0.260 3.740 21 N -0.409 5.409 22 C 0.192 3.808 23 F -0.109 7.109 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.020 0.980 29 H 0.031 0.969 30 H -0.008 1.008 31 H 0.261 0.739 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.150 0.850 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 6.216 6.991 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 N -0.255 5.255 4 C 0.066 3.934 5 C -0.547 4.547 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.042 4.042 14 C -0.137 4.137 15 C 0.160 3.840 16 F -0.095 7.095 17 C -0.191 4.191 18 C -0.040 4.040 19 C -0.085 4.085 20 C -0.055 4.055 21 N -0.084 5.084 22 C 0.169 3.831 23 F -0.087 7.087 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.168 0.832 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.307 7.306 6.970 15.159 hybrid contribution 0.500 -1.196 -0.527 1.400 sum -10.806 6.110 6.442 13.986 Atomic orbital electron populations 1.21811 0.96413 1.00240 1.01715 1.21981 0.94200 0.89677 1.01250 1.62206 1.23637 1.16483 1.23127 1.19810 0.80473 0.97102 0.96013 1.21162 0.92915 1.44288 0.96351 0.91728 1.24989 0.95863 0.95595 0.98095 1.69976 0.98596 1.48261 1.36523 0.86484 0.78131 0.78194 0.84884 1.19611 1.21043 1.21120 1.20897 1.01891 0.87708 0.93676 1.19824 0.91542 0.98267 1.04021 1.17319 0.81987 0.89243 0.95479 1.91545 1.47480 1.79988 1.90529 1.21020 1.00237 0.92022 1.05803 1.20767 0.89344 1.00380 0.93559 1.15939 0.90585 0.90198 1.11751 1.25192 0.92698 0.93817 0.93831 1.81211 1.09497 1.08728 1.08955 1.17146 0.82969 0.87776 0.95186 1.91622 1.50216 1.80419 1.86453 0.92111 0.93337 0.93660 0.89262 0.96202 0.95086 0.98976 0.92968 0.89837 0.93445 0.83186 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.97 37.16 0.37 -1.76 16 2 C 0.06 1.05 5.52 -3.82 -0.02 1.03 16 3 N -0.53 -10.84 4.37 -237.52 -1.04 -11.88 16 4 C 0.19 4.84 4.52 -4.98 -0.02 4.81 16 5 C -0.51 -14.02 8.28 -34.44 -0.29 -14.30 16 6 H 0.06 1.76 7.26 -52.48 -0.38 1.38 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.09 1.47 4.59 -4.98 -0.02 1.44 16 14 C -0.13 -2.10 5.01 -104.55 -0.52 -2.62 16 15 C 0.18 2.39 7.25 -39.30 -0.28 2.10 16 16 F -0.12 -1.59 16.59 2.25 0.04 -1.56 16 17 C -0.17 -1.72 10.01 -39.57 -0.40 -2.12 16 18 C -0.02 -0.20 9.75 -39.19 -0.38 -0.58 16 19 C -0.08 -1.10 5.74 -106.77 -0.61 -1.71 16 20 C 0.26 4.01 14.98 -22.47 -0.34 3.67 16 21 N -0.41 -7.04 18.54 41.84 0.78 -6.26 16 22 C 0.19 3.11 6.32 -38.97 -0.25 2.86 16 23 F -0.11 -2.07 15.08 2.25 0.03 -2.04 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.61 6.58 -51.93 -0.34 0.27 16 27 H 0.09 1.83 6.58 -51.93 -0.34 1.49 16 28 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 29 H 0.03 0.84 5.87 -51.93 -0.31 0.53 16 30 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.08 1.22 5.98 -51.93 -0.31 0.91 16 33 H 0.05 0.83 7.28 -51.93 -0.38 0.46 16 34 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 312.54 15.07 4.71 4.71 Total: -1.00 -31.26 312.54 -6.35 -37.61 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: -3.72 Total: -5.56 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.86 Total: -5.68 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.48 Total: -44.04 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.07 Total: -3.60 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.26 -6.35 -37.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143171029.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.861 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds