Wall clock time and date at job start Tue Mar 31 2020 02:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46734 * 2 1 4 4 C 1.46896 * 110.99584 * 196.33151 * 3 2 1 5 5 C 1.50700 * 109.47064 * 66.05160 * 4 3 2 6 6 H 1.08003 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00220 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99720 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99888 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46644 * 119.99705 * 9 7 5 12 12 H 1.48494 * 109.46957 * 239.99479 * 9 7 5 13 13 C 1.46904 * 111.00128 * 72.38339 * 3 2 1 14 14 C 1.50695 * 109.47011 * 200.19083 * 13 3 2 15 15 C 1.38548 * 119.94969 * 82.93356 * 14 13 3 16 16 F 1.35097 * 119.85313 * 0.02562 * 15 14 13 17 17 C 1.38688 * 120.29194 * 179.97438 * 15 14 13 18 18 C 1.37810 * 120.19250 * 359.97438 * 17 15 14 19 19 C 1.39707 * 119.89579 * 0.02562 * 18 17 15 20 20 C 1.43206 * 120.14235 * 180.02562 * 19 18 17 21 21 N 8.01422 * 117.18548 * 14.39970 * 2 1 3 22 22 C 1.38133 * 119.95224 * 262.65869 * 14 13 3 23 23 F 1.35109 * 120.09438 * 359.97438 * 22 14 13 24 24 H 1.09000 * 109.47335 * 59.28674 * 1 2 3 25 25 H 1.08997 * 109.47127 * 179.28625 * 1 2 3 26 26 H 1.08999 * 109.47593 * 299.28513 * 1 2 3 27 27 H 1.08993 * 109.46984 * 239.99857 * 2 1 3 28 28 H 1.09003 * 109.46776 * 119.99830 * 2 1 3 29 29 H 1.09002 * 109.47112 * 186.04590 * 4 3 2 30 30 H 1.08994 * 109.47621 * 306.04998 * 4 3 2 31 31 H 0.97002 * 119.99804 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47053 * 320.19045 * 13 3 2 33 33 H 1.09001 * 109.47242 * 80.18944 * 13 3 2 34 34 H 1.07999 * 119.90149 * 180.02562 * 17 15 14 35 35 H 1.08001 * 120.05455 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4359 1.4426 -0.3856 5 6 3.5834 1.0103 -1.8217 6 1 2.7122 0.7212 -2.3909 7 6 4.8307 0.9828 -2.4088 8 7 5.8916 1.3343 -1.7156 9 14 5.0136 0.4461 -4.1887 10 1 3.6789 0.1034 -4.7420 11 1 5.6090 1.5524 -4.9804 12 1 5.8984 -0.7444 -4.2583 13 6 1.8037 2.0197 1.3071 14 6 1.8405 3.5180 1.1502 15 6 0.7069 4.1981 0.7354 16 9 -0.4288 3.5151 0.4733 17 6 0.7327 5.5770 0.5891 18 6 1.8870 6.2808 0.8561 19 6 3.0347 5.6031 1.2748 20 6 4.2369 6.3293 1.5542 21 7 5.1915 6.9050 1.7729 22 6 3.0027 4.2120 1.4255 23 9 4.1063 3.5494 1.8359 24 1 -0.3634 0.5249 -0.8835 25 1 -0.3633 -1.0276 -0.0128 26 1 -0.3634 0.5027 0.8963 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8015 2.4634 -0.2742 30 1 4.0144 0.7775 0.2553 31 1 6.7691 1.3146 -2.1284 32 1 0.8327 1.7194 1.7010 33 1 2.5879 1.7073 1.9967 34 1 -0.1548 6.1008 0.2657 35 1 1.9044 7.3546 0.7418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143171029.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:45 Heat of formation + Delta-G solvation = -50.857713 kcal Electronic energy + Delta-G solvation = -21853.645651 eV Core-core repulsion = 18294.163954 eV Total energy + Delta-G solvation = -3559.481697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.24711 -49.95292 -40.29073 -38.63289 -37.48923 -34.82456 -33.32848 -31.79290 -31.32049 -29.01948 -26.50790 -25.02271 -24.19180 -23.34043 -21.63134 -19.76875 -19.15248 -18.77094 -18.32651 -17.30191 -16.97156 -16.64844 -16.33457 -16.09957 -15.83911 -15.45208 -15.38419 -15.00102 -14.89311 -14.46297 -14.28958 -14.12383 -13.95805 -13.58238 -13.55129 -12.97860 -12.85213 -12.79391 -12.57202 -12.53650 -12.39756 -12.28800 -11.80491 -11.61515 -11.23014 -10.62309 -9.98330 -9.80093 -9.07525 -8.19833 -6.29842 -0.57115 -0.06153 1.39445 1.40089 1.41981 1.53614 1.64377 2.38925 2.45126 2.65067 2.81541 3.12904 3.22017 3.32337 3.51606 3.72436 3.97248 4.23783 4.37199 4.43249 4.59126 4.63206 4.74987 4.78144 4.83022 4.93795 4.98896 5.06478 5.15333 5.19807 5.36746 5.50042 5.62318 5.65578 6.05550 6.26708 6.31922 6.58094 6.87320 7.39770 8.90925 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.007120 C = 0.005388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.963055 B = 3931.565434 C = 5195.699121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 N -0.532 5.532 4 C 0.210 3.790 5 C -0.519 4.519 6 H 0.066 0.934 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.966 3.034 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.088 3.912 14 C -0.157 4.157 15 C 0.179 3.821 16 F -0.118 7.118 17 C -0.146 4.146 18 C 0.007 3.993 19 C -0.088 4.088 20 C 0.276 3.724 21 N -0.448 5.448 22 C 0.160 3.840 23 F -0.139 7.139 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.010 0.990 30 H -0.047 1.047 31 H 0.262 0.738 32 H 0.110 0.890 33 H 0.030 0.970 34 H 0.198 0.802 35 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.732 7.474 5.882 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.075 4.075 3 N -0.256 5.256 4 C 0.084 3.916 5 C -0.557 4.557 6 H 0.084 0.916 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.790 3.210 10 H -0.183 1.183 11 H -0.207 1.207 12 H -0.207 1.207 13 C -0.040 4.040 14 C -0.160 4.160 15 C 0.158 3.842 16 F -0.096 7.096 17 C -0.164 4.164 18 C -0.013 4.013 19 C -0.093 4.093 20 C -0.039 4.039 21 N -0.124 5.124 22 C 0.138 3.862 23 F -0.118 7.118 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.028 0.972 30 H -0.029 1.029 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.048 0.952 34 H 0.215 0.785 35 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -14.345 8.559 5.871 17.706 hybrid contribution 1.347 -1.572 -0.125 2.074 sum -12.998 6.987 5.746 15.836 Atomic orbital electron populations 1.21694 0.92851 1.02013 1.02191 1.22054 0.96998 0.88442 1.00032 1.62161 1.20030 1.17835 1.25573 1.19387 0.83053 0.94616 0.94577 1.21493 0.93037 1.43809 0.97347 0.91624 1.25910 0.95506 0.95600 1.02713 1.70125 0.99122 1.49645 1.38581 0.85385 0.78551 0.77751 0.79271 1.18270 1.20669 1.20654 1.20925 1.02512 0.88980 0.91565 1.19757 0.92661 0.97378 1.06189 1.17532 0.81033 0.90506 0.95134 1.91545 1.47237 1.80328 1.90478 1.21510 1.01538 0.90357 1.03000 1.21323 0.87409 1.02343 0.90242 1.16138 0.91325 0.89085 1.12757 1.25471 0.92622 0.93007 0.92752 1.81215 1.10402 1.10280 1.10476 1.17516 0.82577 0.88920 0.97230 1.91540 1.51788 1.81250 1.87205 0.92635 0.90943 0.92053 0.91890 0.96111 0.97226 1.02906 0.92961 0.87211 0.95169 0.78538 0.78750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.97 71.98 0.72 -2.87 16 2 C 0.05 1.95 5.52 86.30 0.48 2.42 16 3 N -0.53 -22.21 4.37 -905.38 -3.95 -26.16 16 4 C 0.21 11.18 4.52 85.56 0.39 11.57 16 5 C -0.52 -29.35 8.28 25.60 0.21 -29.13 16 6 H 0.07 3.62 7.26 -2.91 -0.02 3.60 16 7 C 0.00 0.03 5.46 84.66 0.46 0.49 16 8 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 9 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.09 3.03 4.59 85.55 0.39 3.43 16 14 C -0.16 -4.89 5.01 -19.82 -0.10 -4.98 16 15 C 0.18 4.24 7.25 22.45 0.16 4.41 16 16 F -0.12 -2.82 16.59 44.97 0.75 -2.08 16 17 C -0.15 -2.21 10.01 22.28 0.22 -1.99 16 18 C 0.01 0.11 9.75 22.52 0.22 0.33 16 19 C -0.09 -2.33 5.74 -21.26 -0.12 -2.46 16 20 C 0.28 8.48 14.98 88.33 1.32 9.80 16 21 N -0.45 -15.61 18.54 19.01 0.35 -15.26 16 22 C 0.16 5.32 6.32 22.66 0.14 5.46 16 23 F -0.14 -5.73 15.08 44.97 0.68 -5.06 16 24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.06 1.49 6.58 -2.39 -0.02 1.48 16 27 H 0.06 2.65 6.58 -2.39 -0.02 2.63 16 28 H 0.02 0.75 8.05 -2.39 -0.02 0.73 16 29 H 0.01 0.55 5.87 -2.39 -0.01 0.54 16 30 H -0.05 -2.79 8.12 -2.39 -0.02 -2.81 16 31 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.11 3.11 5.98 -2.38 -0.01 3.10 16 33 H 0.03 1.13 7.28 -2.39 -0.02 1.12 16 34 H 0.20 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -72.39 312.54 5.76 -66.63 By element: Atomic # 1 Polarization: -5.11 SS G_CDS: 1.13 Total: -3.99 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 4.50 Total: -3.52 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -3.32 Total: -98.74 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 1.42 Total: -7.13 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -72.39 5.76 -66.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143171029.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.768 kcal (2) G-P(sol) polarization free energy of solvation -72.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds