Wall clock time and date at job start Tue Mar 31 2020 01:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47413 * 2 1 4 4 O 1.42903 * 109.47302 * 239.99474 * 2 1 3 5 5 C 1.52999 * 109.47094 * 119.99688 * 2 1 3 6 6 H 1.08994 * 109.47681 * 179.97438 * 5 2 1 7 7 O 1.42898 * 109.47378 * 300.00239 * 5 2 1 8 8 C 1.50708 * 109.47043 * 60.00034 * 5 2 1 9 9 O 1.21280 * 119.99671 * 245.00250 * 8 5 2 10 10 N 1.34773 * 119.99918 * 65.00163 * 8 5 2 11 11 C 1.39267 * 119.99500 * 185.60854 * 10 8 5 12 12 C 1.39664 * 119.57974 * 18.86532 * 11 10 8 13 13 C 1.38656 * 119.49651 * 180.02562 * 12 11 10 14 14 C 1.38346 * 118.67090 * 0.02562 * 13 12 11 15 15 C 1.40577 * 119.12825 * 0.02562 * 14 13 12 16 16 C 1.41338 * 119.78671 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99878 * 7.19695 * 16 15 14 18 18 C 1.40026 * 120.00003 * 187.19646 * 16 15 14 19 19 N 1.30747 * 119.99857 * 7.23058 * 18 16 15 20 20 Si 1.86796 * 120.00117 * 187.23606 * 18 16 15 21 21 H 1.48508 * 109.46989 * 265.00926 * 20 18 16 22 22 H 1.48502 * 109.47416 * 25.00501 * 20 18 16 23 23 H 1.48493 * 109.47429 * 145.00748 * 20 18 16 24 24 N 1.31915 * 119.57044 * 199.16689 * 11 10 8 25 25 H 1.08997 * 109.47108 * 300.00775 * 1 2 3 26 26 H 1.09005 * 109.46837 * 60.00118 * 1 2 3 27 27 H 1.09000 * 109.47211 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46870 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46507 * 299.99757 * 3 2 1 30 30 H 1.08993 * 109.47143 * 59.99469 * 3 2 1 31 31 H 0.96698 * 113.99772 * 60.00224 * 4 2 1 32 32 H 0.96704 * 114.00150 * 59.99020 * 7 5 2 33 33 H 0.96993 * 120.00211 * 5.59901 * 10 8 5 34 34 H 1.07998 * 120.25461 * 0.04880 * 12 11 10 35 35 H 1.08002 * 120.66498 * 179.97438 * 13 12 11 36 36 H 1.07997 * 120.43146 * 180.02562 * 14 13 12 37 37 H 0.97003 * 119.99859 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 3.1299 -0.7216 1.2491 7 8 1.5636 -0.0476 2.4160 8 6 1.5376 -2.1421 1.2493 9 8 0.7674 -2.5129 2.1097 10 7 1.9442 -3.0006 0.2933 11 6 1.3921 -4.2772 0.2234 12 6 0.1750 -4.5376 0.8571 13 6 -0.3728 -5.8095 0.7869 14 6 0.3092 -6.7882 0.0862 15 6 1.5308 -6.4638 -0.5290 16 6 2.2390 -7.4528 -1.2488 17 1 1.7893 -8.4189 -1.4240 18 6 3.5235 -7.1799 -1.7347 19 7 4.1246 -6.0668 -1.4043 20 14 4.3784 -8.4061 -2.8549 21 1 5.2569 -9.2879 -2.0448 22 1 3.3605 -9.2301 -3.5552 23 1 5.1973 -7.6755 -3.8552 24 7 2.0285 -5.2265 -0.4354 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.7211 -0.2703 -1.9979 32 1 0.5996 -0.0093 2.4821 33 1 2.6212 -2.7293 -0.3461 34 1 -0.3358 -3.7543 1.3973 35 1 -1.3127 -6.0318 1.2702 36 1 -0.0917 -7.7883 0.0130 37 1 5.0144 -5.8776 -1.7413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153245671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:55 Heat of formation + Delta-G solvation = -94.732799 kcal Electronic energy + Delta-G solvation = -22429.521807 eV Core-core repulsion = 18979.225059 eV Total energy + Delta-G solvation = -3450.296748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.45336 -38.54473 -37.40348 -36.08274 -34.15934 -33.22431 -31.91856 -30.39319 -29.52128 -27.61773 -27.36931 -25.36252 -22.22215 -21.56863 -20.89564 -19.75753 -17.92700 -17.45005 -17.04643 -16.50074 -16.17353 -15.38520 -15.01730 -14.71280 -14.34661 -14.09062 -13.82998 -13.55056 -13.23974 -12.94164 -12.60814 -12.41544 -12.27028 -12.02470 -11.85979 -11.82665 -11.67657 -11.26147 -11.03335 -10.84800 -10.63565 -10.47778 -10.22698 -10.12904 -9.76832 -9.17062 -8.81170 -8.03845 -7.63868 -7.05570 -6.44669 -4.47707 2.44687 2.90241 3.10128 3.13736 3.23484 3.36640 3.47439 3.83425 3.96623 4.31760 4.52177 4.65385 4.73320 4.80432 5.16637 5.30682 5.36550 5.53121 5.58035 5.72112 5.87942 5.93845 6.03971 6.17429 6.50265 6.78769 6.82141 6.85768 7.15843 7.32334 7.47330 7.51605 7.54452 7.87200 7.93836 8.16502 8.31817 8.69118 8.74374 8.99236 10.06846 10.32970 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.005058 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.900463 B = 5534.767258 C = 6301.370728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.103 3.897 3 C -0.171 4.171 4 O -0.550 6.550 5 C 0.107 3.893 6 H 0.130 0.870 7 O -0.527 6.527 8 C 0.489 3.511 9 O -0.522 6.522 10 N -0.626 5.626 11 C 0.359 3.641 12 C -0.315 4.315 13 C -0.050 4.050 14 C -0.290 4.290 15 C 0.281 3.719 16 C -0.438 4.438 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.723 5.723 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.261 1.261 23 H -0.276 1.276 24 N -0.508 5.508 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.384 0.616 32 H 0.381 0.619 33 H 0.414 0.586 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 13.389 -0.964 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.061 3.939 3 C -0.229 4.229 4 O -0.358 6.358 5 C 0.044 3.956 6 H 0.147 0.853 7 O -0.333 6.333 8 C 0.274 3.726 9 O -0.399 6.399 10 N -0.272 5.272 11 C 0.124 3.876 12 C -0.340 4.340 13 C -0.075 4.075 14 C -0.313 4.313 15 C 0.154 3.846 16 C -0.470 4.470 17 H 0.103 0.897 18 C -0.151 4.151 19 N -0.345 5.345 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.185 1.185 23 H -0.201 1.201 24 N -0.226 5.226 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.233 0.767 32 H 0.231 0.769 33 H 0.252 0.748 34 H 0.146 0.854 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.055 13.161 -0.211 13.205 hybrid contribution -0.845 -0.324 -0.968 1.325 sum -1.900 12.837 -1.179 13.030 Atomic orbital electron populations 1.22575 0.95229 1.03863 1.02966 1.21688 0.93478 0.92192 0.86514 1.22404 1.02441 0.95181 1.02863 1.86489 1.76830 1.56938 1.15496 1.21625 1.00988 0.88074 0.84932 0.85271 1.86614 1.28034 1.77222 1.41412 1.21122 0.82168 0.87977 0.81328 1.90630 1.35109 1.77579 1.36562 1.43160 1.41104 1.11649 1.31265 1.18520 0.89076 0.85146 0.94883 1.21567 0.99308 0.98953 1.14123 1.20804 0.97324 0.93198 0.96131 1.21707 1.01076 0.98993 1.09505 1.18175 0.88668 0.88494 0.89215 1.19544 0.99035 0.99099 1.29290 0.89691 1.26018 0.97581 0.95645 0.95874 1.70066 1.11291 1.20991 1.32130 0.86339 0.79631 0.80839 0.80126 1.19600 1.18499 1.20122 1.68007 1.31900 1.00081 1.22637 0.91271 0.91416 0.90946 0.91429 0.92076 0.90792 0.76727 0.76894 0.74813 0.85394 0.88418 0.88265 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.95 8.26 37.16 0.31 -1.64 16 2 C 0.10 1.10 0.92 -90.62 -0.08 1.02 16 3 C -0.17 -1.43 8.67 37.16 0.32 -1.11 16 4 O -0.55 -6.35 10.91 -35.23 -0.38 -6.74 16 5 C 0.11 1.47 2.97 -27.88 -0.08 1.38 16 6 H 0.13 1.69 8.14 -51.93 -0.42 1.26 16 7 O -0.53 -6.88 12.28 -55.09 -0.68 -7.56 16 8 C 0.49 9.12 5.72 -10.98 -0.06 9.05 16 9 O -0.52 -11.23 13.13 -14.30 -0.19 -11.42 16 10 N -0.63 -13.09 4.91 -11.40 -0.06 -13.15 16 11 C 0.36 9.12 7.51 -154.97 -1.16 7.95 16 12 C -0.31 -7.84 8.83 -38.90 -0.34 -8.18 16 13 C -0.05 -1.21 10.15 -39.39 -0.40 -1.61 16 14 C -0.29 -7.43 9.83 -38.66 -0.38 -7.81 16 15 C 0.28 7.88 6.52 -85.00 -0.55 7.32 16 16 C -0.44 -11.85 9.13 -37.73 -0.34 -12.19 16 17 H 0.08 2.15 7.86 -52.49 -0.41 1.74 16 18 C 0.07 1.88 5.47 -17.34 -0.09 1.79 16 19 N -0.72 -19.17 11.56 55.55 0.64 -18.53 16 20 Si 0.91 18.63 29.57 -169.99 -5.03 13.61 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 24 N -0.51 -14.15 8.00 -10.26 -0.08 -14.24 16 25 H 0.07 0.60 6.78 -51.93 -0.35 0.25 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.98 7.22 -51.93 -0.37 0.61 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.60 7.68 -51.93 -0.40 0.20 16 31 H 0.38 2.95 9.05 45.56 0.41 3.36 16 32 H 0.38 4.17 7.08 45.56 0.32 4.49 16 33 H 0.41 8.22 7.45 -40.82 -0.30 7.91 16 34 H 0.13 3.10 5.34 -52.50 -0.28 2.82 16 35 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 36 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 37 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -32.80 311.06 -7.02 -39.82 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -3.06 Total: 17.52 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.88 Total: -4.01 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.50 Total: -45.91 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -1.25 Total: -25.71 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.80 -7.02 -39.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153245671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.909 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds